Escherichia coli, Shigella, Salmonella

Activités de recherche du CNR des Escherichia coli, Shigella, Salmonella

  1. Escherichia coli, Shigella, Salmonella
  2. Activités de recherche du CNR des Escherichia coli, Shigella, Salmonella

Les recherches de l’Unité des Bactéries Pathogènes Entériques concernent, la structure et l’évolution génétique des populations bactériennes entéropathogènes (E. coli, Shigella, Salmonella et vibrions), en particulier les populations émergentes, et/ou épidémiques et/ou résistantes aux antibiotiques et le développement de nouveaux outils diagnostiques.
Le séquençage complet de génome bactérien est désormais utilisé en routine dans les CNR de l’Institut Pasteur.




Bouchrif, B., Le Hello, S., Pardos, M., Karraouan, B., Perrier-Gros-Claude, J.D., Ennaji, M.M., Timinouni, M., and Weill, F.X. (2009). Ceftazidime-resistant Salmonella enterica, Morocco. Emerging Infectious Diseases 15, 1693-1695.

Doublet, B., Praud, K., Weill, F.X., and Cloeckaert, A. (2009). Association of IS26-composite transposons and complex In4-type integrons generates novel multidrug resistance loci in Salmonella genomic island 1. Journal of Antimicrobial Chemotherapy 63, 282-289.

van Cauteren, D., Jourdan-da Silva, N., Weill, F.X., King, L., Brisabois, A., Delmas, G., Vaillant, V., and de Valk, H. (2009). Outbreak of Salmonella enterica serotype Muenster infections associated with goat's cheese, France, March 2008. Euro Surveillance 14, pii:19290.

Fabre, L., Delaune, A., Espie, E., Nygard, K., Pardos, M., Polomack, L., Guesnier, F., Galimand, M., Lassen, J., and Weill, F.X. (2009). Chromosomal integration of the extended-spectrum beta-lactamase gene blaCTX-M-15 in Salmonella enterica serotype Concord isolates from internationally adopted children. Antimicrobial Agents and Chemotherapy 53, 1808-1816.

Fisher, I.S., Jourdan-Da Silva, N., Hachler, H., Weill, F.X., Schmid, H., Danan, C., Kerouanton, A., Lane, C.R., Dionisi, A.M., and Luzzi, I. (2009). Human infections due to Salmonella Napoli: a multicountry, emerging enigma recognized by the Enter-net international surveillance network. Foodborne Pathogens and Disease 6, 613-619.

Pignato, S., Coniglio, M.A., Faro, G., Weill, F.X., and Giammanco, G. (2009). Plasmid-mediated multiple antibiotic resistance of Escherichia coli in crude and treated wastewater used in agriculture. Journal of Water and Health 7, 251-258.

Doublet, B., Granier, S.A., Robin, F., Bonnet, R., Fabre, L., Brisabois, A., Cloeckaert, A., and Weill, F.X. (2009). Novel plasmid-encoded ceftazidime-hydrolyzing CTX-M-53 extended-spectrum beta-lactamase from Salmonella enterica serotypes Westhampton and Senftenberg. Antimicrobial Agents and Chemotherapy 53, 1944-1951.

Dominguez, M., Jourdan-Da Silva, N., Vaillant, V., Pihier, N., Kermin, C., Weill, F.X., Delmas, G., Kerouanton, A., Brisabois, A., and de Valk, H. (2009). Outbreak of Salmonella enterica serotype Montevideo infections in France linked to consumption of cheese made from raw milk. Foodborne Pathogens and Disease 6, 121-128.

Hendriksen, R.S., Mikoleit, M., Carlson, V.P., Karlsmose, S., Vieira, A.R., Jensen, A.B., Seyfarth, A.M., DeLong, S.M., Weill, F.X., Lo Fo Wong, D.M., Angulo, F.J., Wegener, H.C., and Aarestrup, F.M. (2009).

WHO Global Salm-Surv external quality assurance system for serotyping of Salmonella isolates from 2000 to 2007. Journal of Clinical Microbiology 47, 2729-2736.

Hendriksen, R.S., Seyfarth, A.M., Jensen, A.B., Whichard, J., Karlsmose, S., Joyce, K., Mikoleit, M., Delong, S.M., Weill, F.X., Aidara-Kane, A., Lo Fo Wong, D.M., Angulo, F.J., Wegener, H.C., and Aarestrup, F.M. (2009). Results of use of WHO Global Salm-Surv external quality assurance system for antimicrobial susceptibility testing of Salmonella isolates from 2000 to 2007. Journal of Clinical Microbiology 47, 79-85.

Loury, P., Guillois-Becel, Y., Le Mao, A., Briand, A., Le Hello, S., Jourdan-Silva, N., Vaillant, V.  Cas groupés de salmonellose enterica serotype Putten. Nord-ouest de la France, juillet-août 2008, Bulletin Epidémiologique30 :329-31.

Badri, S., Filliol, I., Carle, I., Hassar, M., Fassouane, A., Cohen, N. (2009). Prevalence of virulence genes in Escherichia coli isolated from food in Casablanca (Morocco). Food Control 20 (6) : 560-564.

Badri, S., Fassouane, A., Filliol, I., Hassar, M., and Cohen, N. (2009). Molecular typing of Escherichia coli strains isolated from food in Casablanca (Morocco). Cellular and Molecular Biology 55 Suppl, OL1132-1137.


Farfan, M.J., Garay, T.A., Prado, C.A., Filliol, I., Ulloa, M.T., and Toro, C.S. (2010). A new multiplex PCR for differential identification of Shigella flexneri and Shigella sonnei and detection of Shigella virulence determinants. Epidemiology and Infection 138, 525-533.

Badri, S., Fassouane, A., Filliol, I., Hassar, M., and Cohen, N. (2010). Sequence analysis of the gene encoding H antigen in Escherichia coli isolated from food in Morocco. Journal of Microbiology 48, 184-187.

Gaborieau, V., Weill, F.X., and Marchou, B. (2010). A case of Salmonella enterica serovar typhi with decreased susceptibility to ciprofloxacin. Médecine et Maladies Infectieuses 40, 691-695.

Weill, F.X. (2010). Typhoid fever: facing the challenge of resistant strains. Médecine Sciences 26, 969-975.

Pignato, S., Coniglio, M.A., Faro, G., Lefevre, M., Weill, F.X., and Giammanco, G. (2010). Molecular epidemiology of ampicillin resistance in Salmonella spp. and Escherichia coli from wastewater and clinical specimens. Foodborne Pathogens and Disease 7, 945-951.

Guibourdenche, M., Roggentin, P., Mikoleit, M., Fields, P.I., Bockemuhl, J., Grimont, P.A., and Weill, F.X. (2010). Supplement 2003-2007 (No. 47) to the White-Kauffmann-Le Minor scheme. Research in Microbiology 161, 26-29.

Song, Y., Roumagnac, P., Weill, F.X., Wain, J., Dolecek, C., Mazzoni, C.J., Holt, K.E., and Achtman, M. (2010). A multiplex single nucleotide polymorphism typing assay for detecting mutations that result in decreased fluoroquinolone susceptibility in Salmonella enterica serovars Typhi and Paratyphi A. Journal of Antimicrobial Chemotherapy 65, 1631-1641.

Cloeckaert, A., Praud, K., Lefevre, M., Doublet, B., Pardos, M., Granier, S.A., Brisabois, A., and Weill, F.X. (2010). IncI1 plasmid carrying extended-spectrum-beta-lactamase gene blaCTX-M-1 in Salmonella entericaisolates from poultry and humans in France, 2003 to 2008. Antimicrobial Agents and Chemotherapy 54, 4484-4486.

Bone, A., Noel, H., Le Hello, S., Pihier, N., Danan, C., Raguenaud, M.E., Salah, S., Bellali, H., Vaillant, V., Weill, F.X., and Jourdan-da Silva, N. (2010). Nationwide outbreak of Salmonella enterica serotype 4,12:i:- infections in France, linked to dried pork sausage, March-May 2010. Euro Surveillance 15, pii: 19592.

Sangal, V., Harbottle, H., Mazzoni, C.J., Helmuth, R., Guerra, B., Didelot, X., Paglietti, B., Rabsch, W., Brisse, S., Weill, F.X., Roumagnac, P., and Achtman, M. (2010). Evolution and population structure of Salmonella enterica serovar Newport. Journal of Bacteriology 192, 6465-6476.


Bugarel, M., Granier, S.A., Weill, F.X., Fach, P., and Brisabois, A. (2011). A multiplex real-time PCR assay targeting virulence and resistance genes in Salmonella  serotype Typhimurium. BMC Microbiology 11, 151.

Moissenet, D., Weill, F.X., Arlet, G., Harrois, D., Girardet, J.P., and Vu-Thien, H. (2011). Salmonella serotype Gambia with CTX-M-3 and armA resistance markers: nosocomial infections with a fatal outcome. Journal of Clinical Microbiology 49, 1676-1678.

Pardos de la Gandara, M., Seral, C., Castillo Garcia, J., Rubio Calvo, C., and Weill, F.X. (2011). Prevalence and characterization of extended-spectrum beta-lactamases-producing Salmonella  isolates in Saragossa, Spain (2001-2008). Microbial Drug Resistance 17, 207-213.

Mariani-Kurkdjian, P., Bingen, E., Gault, G., Jourdan-Da Silva, N., and Weill, F.X. (2011). Escherichia coliO104:H4 south-west France, June 2011. Lancet Infectious Diseases 11, 732-733.

Thiolet, J.M., Jourdan-Da Silva, N., Reggiani, A., De Valk, H., Coignard, B., and Weill, F.X. (2011). Nationwide pseudo-outbreak of Salmonella ssp. diarizonae, France. Clinical Microbiology and Infection 17, 915-918.

Accou-Demartin, M., Gaborieau, V., Song, Y., Roumagnac, P., Marchou, B., Achtman, M., and Weill, F.X. (2011). Salmonella  Serotype Typhi with nonclassical quinolone resistance phenotype. Emerging Infectious Diseases 17, 1091-1094.

Monecke, S., Mariani-Kurkdjian, P., Bingen, E., Weill, F.X., Baliere, C., Slickers, P., and Ehricht, R. (2011). Presence of enterohemorrhagic Escherichia coli ST678/O104:H4 in France prior to 2011. Applied and Environmental Microbiology 77, 8784-8786.

Holt, K.E., Phan, M.D., Baker, S., Duy, P.T., Nga, T.V., Nair, S., Turner, A.K., Walsh, C., Fanning, S., Farrell-Ward, S., Dutta, S., Kariuki, S., Weill, F.X., Parkhill, J., Dougan, G., and Wain, J. (2011). Emergence of a globally dominant IncHI1 plasmid type associated with multiple drug resistant typhoid. PLoS Neglected Tropical Diseases 5, e1245.

Le Hello, S., Hendriksen, R.S., Doublet, B., Fisher, I., Nielsen, E.M., Whichard, J.M., Bouchrif, B., Fashae, K., Granier, S.A., Jourdan-Da Silva, N., Cloeckaert, A., Threlfall, E.J., Angulo, F.J., Aarestrup, F.M., Wain, J., and Weill, F.X. (2011). International spread of an epidemic population of Salmonella  serotype Kentucky ST198 resistant to ciprofloxacin. Journal of Infectious Diseases 204, 675-684.

Aldabe, B., Delmas, Y., Gault, G., Vendrely, B., Llanas, B., Charron, M., Castor, C., Ong, N., Weill, F.X., Mariani-Kurkdjian, P., Terrier, F., Desjardin, M., Simoes, J., Le Bihan, B., Combe, C., and Rolland, P. (2011). Household transmission of haemolytic uraemic syndrome associated with Escherichia coli O104:H4, south-western France, June 2011. Euro Surveillance 16, pii:19934.

Gault, G., Weill, F.X., Mariani-Kurkdjian, P., Jourdan-da Silva, N., King, L., Aldabe, B., Charron, M., Ong, N., Castor, C., Mace, M., Bingen, E., Noel, H., Vaillant, V., Bone, A., Vendrely, B., Delmas, Y., Combe, C., Bercion, R., d'Andigne, E., Desjardin, M., de Valk, H., and Rolland, P. (2011). Outbreak of haemolytic uraemic syndrome and bloody diarrhoea due to Escherichia coli O104:H4, south-west France, June 2011. Euro Surveillance 16, pii:19905.

Badri, S., Fassouane, A., Filliol, I., Hassar, M., and Cohen, N. (2011). Detection of Shiga toxin-producing Escherichia coli in meat marketed in Casablanca (Morocco). Cellular and Molecular Biology 57 Suppl, OL1476-1477.

Taneja, N., Nato, F., Dartevelle, S., Sire, J.M., Garin, B., Thi Phuong, L.N., Diep, T.T., Shako, J.C., Bimet, F., Filliol, I., Muyembe, J.J., Ungeheuer, M.N., Ottone, C., Sansonetti, P., and Germani, Y. (2011). Dipstick test for rapid diagnosis of Shigella dysenteriae 1 in bacterial cultures and its potential use on stool samples. PloS One 6, e24830.


Le Hello, S., Brisabois, A., Accou-Demartin, M., Josse, A., Marault, M., Francart, S., Da Silva, N.J., and Weill, F.X. (2012). Foodborne outbreak and nonmotile Salmonella variant, France. Emerging Infectious Diseases 18, 132-134.

Haase, J.K., Brown, D.J., Weill, F.X., Mather, H., Foster, G., Brisse, S., Wain, J., and Achtman, M. (2012). Population genetic structure of 4,12:a:- Salmonella  strains from harbor porpoises. Applied and Environmental Microbiology 78, 8829-8833.

Hendriksen, R.S., Le Hello, S., Bortolaia, V., Pulsrikarn, C., Nielsen, E.M., Pornruangmong, S., Chaichana, P., Svendsen, C.A., Weill, F.X., and Aarestrup, F.M. (2012). Characterization of isolates of Salmonella  serovar Stanley, a serovar endemic to Asia and associated with travel. Journal of Clinical Microbiology 50, 709-720.

Raguenaud, M.E., Le Hello, S., Salah, S., Weill, F.X., Brisabois, A., Delmas, G., and Germonneau, P. (2012). Epidemiological and microbiological investigation of a large outbreak of monophasic Salmonella Typhimurium 4,5,12:i:- in schools associated with imported beef in Poitiers, France, October 2010. Euro Surveillance 17, pii :20289.

Boumart, Z., Roche, S.M., Lalande, F., Virlogeux-Payant, I., Hennequet-Antier, C., Menanteau, P., Gabriel, I., Weill, F.X., Velge, P., and Chemaly, M. (2012). Heterogeneity of persistence of Salmonella  serotype Senftenberg strains could explain the emergence of this serotype in poultry flocks. PloS One 7, e35782.

Le Hello, S., Weill, F.X., Guibert, V., Praud, K., Cloeckaert, A., and Doublet, B. (2012). Early strains of multidrug-resistant Salmonella  serovar Kentucky sequence type 198 from Southeast Asia harbor Salmonella genomic island 1-J variants with a novel insertion sequence. Antimicrobial Agents and Chemotherapy 56, 5096-5102.

Kermas, R., Touati, A., Brasme, L., Le Magrex-Debar, E., Mehrane, S., Weill, F.X., and De Champs, C. (2012). Characterization of extended-spectrum beta-lactamase-producing Salmonella  serotype Brunei and Heidelberg at the Hussein Dey hospital in Algiers (Algeria). Foodborne Pathogens and Disease 9, 803-808.

Achtman, M., Wain, J., Weill, F.X., Nair, S., Zhou, Z., Sangal, V., Krauland, M.G., Hale, J.L., Harbottle, H., Uesbeck, A., Dougan, G., Harrison, L.H., and Brisse, S. (2012). Multilocus sequence typing as a replacement for serotyping in Salmonella. PLoS Pathogens 8, e1002776.

Jourdan-da Silva, N., Watrin, M., Weill, F.X., King, L.A., Gouali, M., Mailles, A., van Cauteren, D., Bataille, M., Guettier, S., Castrale, C., Henry, P., Mariani, P., Vaillant, V., and de Valk, H. (2012). Outbreak of haemolytic uraemic syndrome due to Shiga toxin-producing Escherichia coli O104:H4 among French tourists returning from Turkey, September 2011. Euro Surveillance 17, pii: 20065.

Grad, Y.H., Lipsitch, M., Feldgarden, M., Arachchi, H.M., Cerqueira, G.C., Fitzgerald, M., Godfrey, P., Haas, B.J., Murphy, C.I., Russ, C., Sykes, S., Walker, B.J., Wortman, J.R., Young, S., Zeng, Q., Abouelleil, A., Bochicchio, J., Chauvin, S., Desmet, T., Gujja, S., McCowan, C., Montmayeur, A., Steelman, S., Frimodt-Moller, J., Petersen, A.M., Struve, C., Krogfelt, K.A., Bingen, E., Weill, F.X., Lander, E.S., Nusbaum, C., Birren, B.W., Hung, D.T., and Hanage, W.P. (2012). Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011. Proceedings of the National Academy of Sciences of the United States of America 109, 3065-3070.

Grad, Y.H., Lipsitch, M., Griggs, A.D., Haas, B.J., Shea, T.P., McCowan, C., Montmayeur, A., FitzGerald, M., Wortman, J.R., Krogfelt, K.A., Bingen, E., Weill, F.X., Tietze, E., Flieger, A., Lander, E.S., Nusbaum, C., Birren, B.W., Hung, D.T., and Hanage, W.P. (2012). Reply to Guy et al.: Support for a bottleneck in the 2011 Escherichia coli O104:H4 outbreak in Germany. Proceedings of the National Academy of Sciences of the United States of America 109, E3629-3630.

Gossner, C.M., van Cauteren, D., Le Hello, S., Weill, F.X., Terrien, E., Tessier, S., Janin, C., Brisabois, A., Dusch, V., Vaillant, V., and Jourdan-da Silva, N. (2012). Nationwide outbreak of Salmonella  serotype 4,[5],12:i:- infection associated with consumption of dried pork sausage, France, November to December 2011. Euro Surveillance 17, pii: 20071.

Holt, K.E., Baker, S., Weill, F.X., Holmes, E.C., Kitchen, A., Yu, J., Sangal, V., Brown, D.J., Coia, J.E., Kim, D.W., Choi, S.Y., Kim, S.H., da Silveira, W.D., Pickard, D.J., Farrar, J.J., Parkhill, J., Dougan, G., and Thomson, N.R. (2012). Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe. Nature Genetics 44, 1056-1059.

Fabre, L., Zhang, J., Guigon, G., Le Hello, S., Guibert, V., Accou-Demartin, M., de Romans, S., Lim, C., Roux, C., Passet, V., Diancourt, L., Guibourdenche, M., Issenhuth-Jeanjean, S., Achtman, M., Brisse, S., Sola, C., and Weill, F.X. (2012). CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections. PloS One 7, e36995.

King, L.A., Nogareda, F., Weill, F.X., Mariani-Kurkdjian, P., Loukiadis, E., Gault, G., Jourdan-DaSilva, N., Bingen, E., Mace, M., Thevenot, D., Ong, N., Castor, C., Noel, H., Van Cauteren, D., Charron, M., Vaillant, V., Aldabe, B., Goulet, V., Delmas, G., Couturier, E., Le Strat, Y., Combe, C., Delmas, Y., Terrier, F., Vendrely, B., Rolland, P., and de Valk, H. (2012). Outbreak of Shiga toxin-producing Escherichia coli O104:H4 associated with organic fenugreek sprouts, France, June 2011. Clinical Infectious Diseases 54, 1588-1594.


Kerouanton, A., Rose, V., Weill, F.X., Granier, S.A., and Denis, M. (2013). Genetic diversity and antimicrobial resistance profiles of Salmonella  serotype derby isolated from pigs, pork, and humans in France. Foodborne Pathogens and Disease 10, 977-984.

Baucheron, S., Le Hello, S., Doublet, B., Giraud, E., Weill, F.X., and Cloeckaert, A. (2013). ramR mutations affecting fluoroquinolone susceptibility in epidemic multidrug-resistant Salmonella  serovar Kentucky ST198. Frontiers in Microbiology 4, 213.

Rahman, M.Z., Akter, S., Azmuda, N., Sultana, M., Weill, F.X., Khan, S.I., Grimont, P.A., and Birkeland, N.K. (2013). Serological cross-reaction between O-antigens of Shigella dysenteriae type 4 and an environmental Escherichia albertii isolate. Current Microbiology 67, 590-595.

Nadon, C.A., Trees, E., Ng, L.K., Moller Nielsen, E., Reimer, A., Maxwell, N., Kubota, K.A., and Gerner-Smidt, P. (2013). Development and application of MLVA methods as a tool for inter-laboratory surveillance. Euro Surveillance 18, pii : 20565.

Gouali, M., Ruckly, C., Carle, I., Lejay-Collin, M., and Weill, F.X. (2013). Evaluation of CHROMagar STEC and STEC O104 chromogenic agar media for detection of Shiga Toxin-producing Escherichia coli in stool specimens. Journal of Clinical Microbiology 51, 894-900.

Sire, J.M., Garin, B., Chartier, L., Fall, N.K., Tall, A., Seck, A., Weill, F.X., Breurec, S., and Vray, M. (2013). Community-acquired infectious diarrhoea in children under 5 years of age in Dakar, Senegal. Paediatrics and International Child Health 33, 139-144.

Barret, A.S., Charron, M., Mariani-Kurkdjian, P., Gouali, M., Loukiadis, E., Poignet-Leroux, B., Godron, A., Gault, G., Faure, M., and Mailles, A. (2013). Shopper cards data and storage practices for the investigation of an outbreak of Shiga-toxin producing Escherichia coli O157 infections. Médecine et Maladies Infectieuses 43, 368-373.

Le Hello, S., Harrois, D., Bouchrif, B., Sontag, L., Elhani, D., Guibert, V., Zerouali, K., and Weill, F.X. (2013). Highly drug-resistant Salmonella  serotype Kentucky ST198-X1: a microbiological study. Lancet Infectious Diseases 13, 672-679.

Gouali, M., and Weill, F.X. (2013). Enterohemorragic Escherichia coli (EHEC): topical enterobacteriaceae. Presse Médicale 42, 68-75.

David, J.M., Sanders, P., Bemrah, N., Granier, S.A., Denis, M., Weill, F.X., Guillemot, D., and Watier, L. (2013). Attribution of the French human Salmonellosis cases to the main food-sources according to the type of surveillance data. Preventive Veterinary Medicine 110, 12-27.

Larsson, J.T., Torpdahl, M., and Moller Nielsen, E. (2013). Proof-of-concept study for successful inter-laboratory comparison of MLVA results. Euro Surveillance 18, pii:20566.

David, J.M., Guillemot, D., Bemrah, N., Thebault, A., Brisabois, A., Chemaly, M., Weill, F.X., Sanders, P., and Watier, L. (2013). The Bayesian microbial subtyping attribution model: robustness to prior information and a proposition. Risk Analysis 33, 397-408.

Zajac, M., Wasyl, D., Hoszowski, A., Le Hello, S., and Szulowski, K. (2013). Genetic lineages of Salmonella  serovar Kentucky spreading in pet reptiles. Veterinary Microbiology 166, 686-689.

Sangal, V., Holt, K.E., Yuan, J., Brown, D.J., Filliol-Toutain, I., Weill, F.X., Kim, D.W., da Silveira, W.D., Pickard, D., Thomson, N.R., Parkhill, J., and Yu, J. (2013). Global phylogeny of Shigella sonnei strains from limited single nucleotide polymorphisms (SNPs) and development of a rapid and cost-effective SNP-typing scheme for strain identification by high-resolution melting analysis. Journal of Clinical Microbiology 51, 303-305.

Rosin, P., Niskanen, T., Palm, D., Struelens, M., and Takkinen, J. (2013). Laboratory preparedness for detection and monitoring of Shiga toxin 2-producing Escherichia coli O104:H4 in Europe and response to the 2011 outbreak. Euro Surveillance 18, pii: 20508.

Grad, Y.H., Godfrey, P., Cerquiera, G.C., Mariani-Kurkdjian, P., Gouali, M., Bingen, E., Shea, T.P., Haas, B.J., Griggs, A., Young, S., Zeng, Q., Lipsitch, M., Waldor, M.K., Weill, F.X., Wortman, J.R., and Hanage, W.P. (2013). Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: short-term evolution of an emerging pathogen. mBio 4, e00452-00412.

Lindstedt, B.A., Torpdahl, M., Vergnaud, G., Le Hello, S., Weill, F.X., Tietze, E., Malorny, B., Prendergast, D.M., Ni Ghallchoir, E., Lista, R.F., Schouls, L.M., Soderlund, R., Borjesson, S., and Akerstrom, S. (2013). Use of multilocus variable-number tandem repeat analysis (MLVA) in eight European countries, 2012. Euro Surveillance 18, pii :20385.

Tourdjman, M., Le Hello, S., Gossner, C., Delmas, G., Tubiana, S., Fabre, L., Kerleguer, A., Tarantola, A., Fruth, A., Friesema, I., Thorstensen Brandal, L., Lawrence, J., Fisher, I., Dufour, M., Weill, F.X., and de Valk, H. (2013). Unusual increase in reported cases of paratyphoid A fever among travellers returning from Cambodia, January to September 2013. Euro Surveillance 18, pii: 20594.

Le Hello, S., Bekhit, A., Granier, S.A., Barua, H., Beutlich, J., Zajac, M., Munch, S., Sintchenko, V., Bouchrif, B., Fashae, K., Pinsard, J.L., Sontag, L., Fabre, L., Garnier, M., Guibert, V., Howard, P., Hendriksen, R.S., Christensen, J.P., Biswas, P.K., Cloeckaert, A., Rabsch, W., Wasyl, D., Doublet, B., and Weill, F.X. (2013). The global establishment of a highly-fluoroquinolone resistant Salmonella  serotype Kentucky ST198 strain. Frontiers in Microbiology 4, 395.

Guillon, F., Chasset P., Le Hello S., Granier SA. Epidemiological investigation of highly ciprofloxacin resistant Salmonella Kentucky detected for the first time in French avian production. Bulletin Epidémiologique Hebdomadaire 201, 57.


Jones, G., Le Hello, S., Jourdan-da Silva, N., Vaillant, V., de Valk, H., Weill, F., and Le Strat, Y. (2014). The French human Salmonella surveillance system: evaluation of timeliness of laboratory reporting and factors associated with delays, 2007 to 2011. Euro Surveillance 19, pii:20664.

Baucheron, S., Monchaux, I., Le Hello, S., Weill, F.X., and Cloeckaert, A. (2014). Lack of efflux mediated quinolone resistance in Salmonella  serovars Typhi and Paratyphi A. Frontiers in Microbiology 5, 12.

Issenhuth-Jeanjean, S., Roggentin, P., Mikoleit, M., Guibourdenche, M., de Pinna, E., Nair, S., Fields, P.I., and Weill, F.X. (2014). Supplement 2008-2010 (no. 48) to the White-Kauffmann-Le Minor scheme. Research in Microbiology 165, 526-530.

Jure, M.A., Duprilot, M., Musa, H.E., Lopez, C., de Castillo, M.C., Weill, F.X., Arlet, G., and Decre, D. (2014). Emergence of KPC-2-Producing Salmonella  Serotype Schwarzengrund in Argentina. Antimicrobial Agents and Chemotherapy 58, 6335-6336.

Compain, F., Poisson, A., Le Hello, S., Branger, C., Weill, F.X., Arlet, G., and Decre, D. (2014). Targeting relaxase genes for classification of the predominant plasmids in Enterobacteriaceae. International Journal of Medical 304, 236-242.

Zhou, Z., McCann, A., Weill, F.X., Blin, C., Nair, S., Wain, J., Dougan, G., and Achtman, M. (2014). Transient Darwinian selection in Salmonella  serovar Paratyphi A during 450 years of global spread of enteric fever. Proceedings of the National Academy of Sciences of the United States of America 111, 12199-12204.

Fabre, L., Le Hello, S., Roux, C., Issenhuth-Jeanjean, S., and Weill, F.X. (2014). CRISPR is an optimal target for the design of specific PCR assays for Salmonella  serotypes Typhi and Paratyphi A. PLoS Neglected Tropical Diseases 8, e2671.

Gay, N., Le Hello, S., Weill, F.X., de Thoisy, B., and Berger, F. (2014). Salmonella serotypes in reptiles and humans, French Guiana. Veterinary Microbiology 170, 167-171.

Ley, B., Le Hello, S., Lunguya, O., Lejon, V., Muyembe, J.J., Weill, F.X., and Jacobs, J. (2014). Invasive Salmonella  serotype typhimurium infections, Democratic Republic of the Congo, 2007-2011. Emerging Infectious Diseases 20, 701-704.

Harrois, D., Breurec, S., Seck, A., Delaune, A., Le Hello, S., Pardos de la Gandara, M., Sontag, L., Perrier-Gros-Claude, J.D., Sire, J.M., Garin, B., and Weill, F.X. (2014). Prevalence and characterization of extended-spectrum beta-lactamase-producing clinical Salmonella  isolates in Dakar, Senegal, from 1999 to 2009. Clinical Microbiology and Infection 20, O109-116.

King, L.A., Loukiadis, E., Mariani-Kurkdjian, P., Haeghebaert, S., Weill, F.X., Baliere, C., Ganet, S., Gouali, M., Vaillant, V., Pihier, N., Callon, H., Novo, R., Gaillot, O., Thevenot-Sergentet, D., Bingen, E., Chaud, P., and de Valk, H. (2014). Foodborne transmission of sorbitol-fermenting Escherichia coli O157:[H7] via ground beef: an outbreak in northern France, 2011. Clinical Microbiology and Infection doi: 10.1111/1469-0691.12736

> En savoir plus sur les activités de recherche

Retour en haut