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Fredj Tekaia: Publications

Fredj Tekaia
Institut Pasteur
28, rue du Dr Roux
75724 Paris cedex 15
France
e-mail: tekaia@pasteur.fr

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  • Morales L, Noel B, Porcel B, Marcet-Houben M, Hullo MF, Sacerdot C, Tekaia F, Leh-Louis V, Despons L, Khanna V, Aury JM, Barbe V, Couloux A, Labadie K, Pelletier E, Souciet JL, Boekhout T, Gabaldon T, Wincker P, Dujon B. (2013).
    Complete DNA sequence of Kuraishia capsulata illustrates novel genomic features among budding yeasts (Saccharomycotina).
    Genome Biol Evol. 5:2524-39.
    [Abstract] [Article PDF (GBE)] [Article PDF] [SupplMaterial PDF].

  • Fredj Tekaia, Bernard Dujon, Guy-Franck Richard. (2013).
    Detection and Characterization of Megasatellites in Orthologous and Nonorthologous Genes of 21 Fungal Genomes.
    Eukaryotic Cell 2013, 12(6):794.
    [Abstract] [Article PDF] [Supplementary Table of Detailed Megasats xls] [Supplementary Table of Detailed Megasats PDF] [Legend to Supplementary Table PDF] [Article Text].

  • Evie Melanitou, Tekaia F, Yeramian E. (2013).
    Investigation of secreted protein transcripts as early biomarkers for type 1 diabetes in the mouse model.
    GENE 2013; 512(1):161-5.
    [Abstract] [Article PDF] [Article Text]

  • Tekaia F, Yeramian E. (2012).
    SuperPartitions: Detection and classification of orthologs.
    GENE 2012, 492(1):199-211.
    [Abstract] [Article PDF] [Supplementary Material PDF] [ Article Text].

  • Cassisa V, Chauty A, Marion E, Ardant MF, Eyangoh S, Cottin J, Aubry J, Koussemou H, Lelievre B, Ferec S, Tekaia F, Johnson C and Marsolier L. (2010).
    Use of fine-needle aspiration for diagnosis of Mycobacterium ulcerans infection.
    J. Clin Microbial 48(6):2263-4.
    [Abstract]

  • Sacerdot C, Casaregola S, Lafontaine I, Tekaia F, Dujon B, Ozier-Kalogeropoulos O. (2008).
    Promiscuous DNA in the nuclear genomes of hemiascomycetous yeasts.
    FEMS Yeast Res. 2008.
    [Abstract] [Article text] [Article PDF]

  • Marsollier L, Deniaux E, Brodin P, Marot A, Wondje CM, Saint-Andre JP, Chauty A, Johnson C, Tekaia F, Yeramian E, Legras P, Carbonnelle B, Reysset G, Eyangoh S, Milon G, Cole ST, Aubry J. (2007).
    Protection against Mycobacterium ulcerans Lesion Development by Exposure to Aquatic Insect Saliva.
    PLoS Med.4(2):e64.
    [Abstract] [Article Text] [Article PDF]

  • Stinear TP, Seemann T, Pidot S, Frigui W, Reysset G, Garnier T, Meurice G, Simon D, Bouchier C, Ma L, Tichit M, Porter JL, Ryan J, Johnson PD, Davies JK, Jenkin GA, Small PL, Jones LM, Tekaia F, Laval F, Daffe M, Parkhill J, Cole ST. (2007).
    Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer.
    Genome Res. 17:192-200.
    [Abstract] [Article Text] [Article PDF].

  • Tekaia F, Yeramian E. (2006).
    Evolution of proteomes: Fundamental signatures and global trends in amino acid compositions.
    BMC Genomics. 7:307
    [Abstract] [Article Text] [Article PDF]

  • Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, Berriman M, Abe K, Archer DB, Bermejo C, Bennett J, Bowyer P, Chen D, Collins M, Coulsen R, Davies R, Dyer PS, Farman M, Fedorova N, Fedorova N, Feldblyum TV, Fischer R, Fosker N, Fraser A, Garcia JL, Garcia MJ, Goble A, Goldman GH, Gomi K, Griffith-Jones S, Gwilliam R, Haas B, Haas H, Harris D, Horiuchi H, Huang J, Humphray S, Jimenez J, Keller N, Khouri H, Kitamoto K, Kobayashi T, Konzack S, Kulkarni R, Kumagai T, Lafton A, Latge JP, Li W, Lord A, Lu C, Majoros WH, May GS, Miller BL, Mohamoud Y, Molina M, Monod M, Mouyna I, Mulligan S, Murphy L, O'Neil S, Paulsen I, Penalva MA, Pertea M, Price C, Pritchard BL, Quail MA, Rabbinowitsch E, Rawlins N, Rajandream MA, Reichard U, Renauld H, Robson GD, Rodriguez de Cordoba S, Rodriguez-Pena JM, Ronning CM, Rutter S, Salzberg SL, Sanchez M, Sanchez-Ferrero JC, Saunders D, Seeger K, Squares R, Squares S, Takeuchi M, Tekaia F, Turner G, Vazquez de Aldana CR, Weidman J, White O, Woodward J, Yu JH, Fraser C, Galagan JE, Asai K, Machida M, Hall N, Barrell B, Denning DW. (2005).
    Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus.
    Nature. 438:1151-6. [Abstract] [Article Text] [Article PDF].

  • Tekaia F, Yeramian E. (2005).
    Genome Trees From Conservation Profiles.
    PLoS Comput Biol 1(7): e75 See cover image here. ( Download cover image here.)
    [Abstarct] [Article Text] [Article PDF].

  • Tekaia F, Latge JP.(2005).
    Aspergillus fumigatus: saprophyte or pathogen?
    Curr Opin Microbiol. 4:385-92.[Abstract] [Article Text] [Article PDF].

  • Burkhard R. Braun, Marco van het Hoog, Christophe dis, M. Andrew Uhl, Herve4 Hogues, Matthew Berriman, Michael Lorenz, Anastasia Levitin, Ursula Oberholzer, Catherine Bachewich, Doreen Harcus, Anne Marcil, Daniel Dignard, Tatiana Iouk, Rosa Zito, Lionel Frangeul, Fredj Tekaia, Kim Rutherford, Edwin Wang, Carol A. Munro, Steve Bates, Neil A. Gow, Lois L. Hoyer, Gerwald Kohler, Joachim Morschhauser, George Newport, Sadri Znaidi, Martine Raymond, Bernard Turcotte, Gavin Sherlock, Maria Costanzo, Jan Ihmels, Judith Berman, Dominique Sanglard, Nina Agabian, Aaron P. Mitchell, Alexander D. Johnson, Malcolm Whiteway, Andre Nantel (2005).
    A human-Curated Annotation of the candida albicans Genome.
    PLoS Genet 1(1): e1 [Abstract] [Article Text] [Article PDF].

  • Latge JP, Mouyna I, Tekaia F, Beauvais A, Debeaupuis JP, Nierman W.(2005).
    Specific molecular features in the organization and biosynthesis of the cell wall of Aspergillus fumigatus.
    MEDICAL MYCOLOGY 43: S15-S22 Suppl. 1, MAY 2005. [Abstract].

  • d'Enfert, C., S. Goyard, S.Rodriguez-Arnaveilhe, L. Frangeul, L. Jones, F. Tekaia, O. Bader, Antje Albrecht, L. Castillo, A. Dominguez, J. Ernst, C. Fradin, C. Gaillardin, S. Garcia-Sanchez, P. de Groot, B. Hube, F.M. Klis, S. Krishnamurthy, D. Kunze, M.-C. Lopez, A. Mavor, N. Martin, I. Moszer, D. Onisime, J. Perez Martin, R. Sentandreu, E. Valentin and A.J.P. Brown (2005).
    CandidaDB: a genomic database for Candida albicans pathogenomics.
    Nucl. Acid Res. Database issue; D353-D357.[Abstract] [Article Text] [Article PDF].

  • Ricchetti M, Tekaia F, Dujon B.(2004).
    Continued colonization of the human genome by mitochondrial DNA.
    PLoS Biol.2(9):E273. Epub 2004 Sep 07. [Abstract] [Article Text] [Article PDF].

  • Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, De Montigny J, Marck C, Neuveglise C, Talla E, Goffard N, Frangeul L, Aigle M, Anthouard V, Babour A, Barbe V, Barnay S, Blanchin S, Beckerich JM, Beyne E, Bleykasten C, Boisrame A, Boyer J, Cattolico L, Confanioleri F, De Daruvar A, Despons L, Fabre E, Fairhead C, Ferry-Dumazet H, Groppi A, Hantraye F, Hennequin C, Jauniaux N, Joyet P, Kachouri R, Kerrest A, Koszul R, Lemaire M, Lesur I, Ma L, Muller H, Nicaud JM, Nikolski M, Oztas S, Ozier-Kalogeropoulos O, Pellenz S, Potier S, Richard GF, Straub ML, Suleau A, Swennen D, Tekaia F, Wesolowski-Louvel M, Westhof E, Wirth B, Zeniou-Meyer M, Zivanovic I, Bolotin-Fukuhara M, Thierry A, Bouchier C, Caudron B, Scarpelli C, Gaillardin C, Weissenbach J, Wincker P, Souciet JL.(2004).
    Genome evolution in yeasts.
    Nature 430(6995):35-44. [Abstract] [Article Text] [Article PDF].

  • Talla E, Tekaia F, Brino L, Dujon B.(2003).
    A novel design of whole-genome microarray probes for Saccharomyces cerevisiae which minimizes cross-hybridization.
    BMC Genomics. 4(1):38.
    [Abstract] [Article Text] [Article PDF].

  • Gustavo H. Goldman, Everaldo dos Reis Marques, Diegenes Custedio Duarte Ribeiro, Luciano engelo de Souza Bernardes, Andrea Carla Quiapin, Patricia Marostica Vitorelli, Marcela Savoldi, Camile P. Semighini, Regina C. de Oliveira, Luiz R. Nunes, Luiz R. Travassos, Rosana Puccia, Wagner L. Batista, Leslie Ecker Ferreira, Jelio C. Moreira, Ana Paula Bogossian, Fredj Tekaia, Marina Pasetto Nobrega, Francisco G. Nobrega, and Maria Helena S. Goldman (2003).
    Expressed Sequence Tag Analysis of the Human Pathogen Paracoccidioides brasiliensis Yeast Phase: Identification of Putative Homologues of Candida albicans Virulence and Pathogenicity Genes.
    Eukaryotic Cell, 2:34-48. [Abstract] [Article Text] [Article PDF].

  • Fredj Tekaia, Edouard Yeramian and Bernard Dujon (2002)
    Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: a global picture with correspondence analysis.
    GENE 297:51-60.[Abstract] [Article Text] [Article PDF].

  • Zwaenepoel I, Mustapha M, Leibovici M, Verpy E, Goodyear R, Liu XZ, Nouaille S, Nance WE, Kanaan M, Avraham KB, Tekaia F, Loiselet J, Lathrop M, Richardson G, Petit C. (2002)
    Otoancorin, an inner ear protein restricted to the interface between the apical surface of sensory epithelia and their overlying acellular gels, is defective in autosomal recessive deafness DFNB22.
    Proc Natl Acad Sci U S A 99:6240-6245. [Abstract] [Article Text] [Article PDF].

  • Eiglmeier K, Parkhill J, Honore N, Garnier T, Tekaia F, Telenti A, Klatser P, James KD, Thomson NR, Wheeler PR, Churcher C, Harris D, Mungall K, Barrell BG, Cole ST. (2001)
    The decaying genome of Mycobacterium leprae.
    Lepr Rev. 72, 387-98. Review. [Abstract] [Article PDF].

  • A. Munir A. Murad, Christophe d'Enfert, Claude Gaillardin, Helene Tournu, Fredj Tekaia, Driss Talibi, Daniel Marechal, Veronique Marchais, Jane Cottin and Alistair J.P. Brown. (2001)
    Transcript profiling in Candida albicans reveals new cellular functions for the transcriptional repressors CaTup1, CaMig1 and CaNrg1.
    Molecular Microbiology 42, 981-993. [Abstract] [Article Text] [Article PDF]

  • Murad AM, Leng P, Straffon M, Wishart J, Macaskill S, MacCallum D, Schnell N, Talibi D, Marechal D, Tekaia F, d'Enfert C, Gaillardin C, Odds FC, Brown AJ. (2001)
    NRG1 represses yeast-hypha morphogenesis and hypha-specific gene expression in Candida albicans.
    EMBO J. 20(17):4742-4752. [Abstract] [Article Text] [Article PDF]

  • Fredj Tekaia, Gaelle Blandin, Alain Malpertuy, Bertrand Llorente, Pascal Durrens, Claire Toffano-Nioche, Odile Ozier-Kalogeropoulos, Elisabeth Bon, Claude Gaillardin, Michel Aigle, Monique Bolotin-Fukuhara, Serge Casaregola, Jacky de Montigny, Andree Lepingle, Cecile Neuveglise, Serge Potier, Jean-Luc Souciet, Micheline Wesolowski-Louvel and Bernard Dujon (2000)
    Methods and strategies used for sequence analysis and annotation.
    FEBS 487,1:17-30. [Abstract] [Article text] [Article PDF]

  • Alain Malpertuy*, Fredj Tekaia*, Serge Casaregola, Michel Aigle, Francois Artiguenave, Gaelle Blandin, Monique Bolotin-Fukuhara, Elisabeth Bon, Philippe Brottier, Jacky de Montigny, Pascal Durrens, Claude Gaillardin, Andree Lepingle, Bertrand Llorente, Cecile Neuveglise, Odile Ozier-Kalogeropoulos, Serge Potier, William Saurin, Claire Toffano-Nioche, Micheline Wesolowski-Louvel, Patrick Winckler, Jean Weissenbach, Jean-Luc Souciet and Bernard Dujon (2000)
    *: These two authors contributed equally to this work.
    "Yeast specific" genes.
    FEBS 487,1:113-121. [Abstract] [Article Text] [Article PDF]

  • Gaelle Blandin, Pascal Durrens, Fredj Tekaia, Michel Aigle, Monique Bolotin-Fukuhara, Elisabeth Bon, Serge Casaregola, Jacky de Montigny, Claude Gaillardin, Andree Lepingle, Bertrand Llorente, Alain Malpertuy, Cecile Neuveglise, Odile Ozier-Kalogeropoulos, Arnaud Perrin, Serge Potier, Jean-Luc Souciet, Emmanuel Talla, Claire Toffano-Nioche, Micheline Wesolowski-Louvel, Christian Marck and Bernard Dujon (2000)
    The genome of Saccharomyces cerevisiae revisited.
    FEBS 487,1:31-36. [Abstract] [Article Text] [Article PDF]

  • Claude Gaillardin, Guillemette Duchateau-Nguyen, Fredj Tekaia, Bertrand Llorente, Serge Casaregola, Claire Toffano-Nioche, Michel Aigle, Francois Artiguenave, Gaelle Blandin, Monique Bolotin-Fukuhara, Elisabeth Bon, Philippe Brottier, Jacky de Montigny, Pascal Durrens, Andree Lepingle, Alain Malpertuy, Cecile Neuveglise, Odile Ozier-Kalogeropoulos, Serge Potier, William Saurin, Michel Termier, Micheline Wesolowski-Louvel, Patrick Winckler, Jean-Luc Souciet and Jean Weissenbach (2000)
    Comparative functional classification of genes.
    FEBS 487,1:134-149. [Abstract] [Article Text] [Article PDF]

  • Jacky de Montigny, Marie-Laure Straub, Serge Potier, Fredj Tekaia, Bernard Dujon, Patrick Winckler, Francois Artiguenave and Jean-Luc Souciet (2000)
    The genome of Zygosaccharomyces rouxii.
    FEBS 487,1 :52-55. [Abstract] [Article Text] [Article PDF]

  • Jacky de Montigny, Catherine Spehner, Jean-Luc Souciet, Fredj Tekaia, Bernard Dujon, Patrick Winckler, Francois Artiguenave and Serge Potier (2000)
    The genome of Pichia sorbitophila.
    FEBS 487,1:87-90. [Abstract] [Article Text] [Article PDF]

  • Jean-Luc Souciet, Michel Aigle, Francois Artiguenave, Gaelle Blandin, Monique Bolotin-Fukuhara, Elisabeth Bon, Philippe Brottier, Serge Casaregola, Jacky de Montigny, Bernard Dujon, Pascal Durrens, Claude Gaillardin, Andree Lepingle, Bertrand Llorente, Alain Malpertuy, Cecile Neuveglise, Odile Ozier-Kalogeropoulos, Serge Potier, William Saurin, Fredj Tekaia, Claire Toffano-Nioche, Micheline Wesolowski-Louvel, Patrick Winckler and Jean Weissenbach (2000)
    A set of yeast species for molecular evolution studies.
    FEBS 487,1 :3-12. [Abstract] [Article Text] [Article PDF]

  • Fouchard, N., Lacoste, V., Couppie, P., Develoux, M., Mauclere, P., Michel, P., Herve, V., Pradinaud, R., Bestetti, G., Huerre, M., Tekaia, F., de The, G. and Gessain, A. (2000)
    Detection and genetic polymorphism of human herpes virus type 8 in endemic or epidemic Kaposi's sarcoma from west and central africa, and south america.
    Int J Cancer. 85:166-70. [Abstract] [Article PDF]

  • Tekaia, F. and B. Dujon (1999)
    Pervasiveness of gene conservation and persistence of duplicates in cellular genomes.
    Journal of Molecular Evolution 49:591-600. [Abstract] [Article text] [Article PDF]

  • Tekaia, F., Gordon, S.V., Garnier, T., Brosch, R., Barrel, B.G. and S.T. Cole (1999)
    Analysis of the proteome of Mycobacterium tuberculosis in silico.
    Tubercle and Lung Disease. 79:329-342. [Abstract] [Article PDF]

  • Tekaia, F., Lazcano, A. and B. Dujon (1999)
    The genomic tree as revealed from whole proteome comparisons
    Genome Research 9:550-557. [Abstract] [Article Text] [Article PDF]

  • Biglione, M., O. Vidan, Mahieux, R., de Colombo, M., de los Angelos de Basualdo, M., Bonnet, M. Pankow, G., De Efron, M.A., Zorilla, A., Tekaia, F., Murphy, E., de The, G., and A. Gessain. (1999)
    Seroepidemiological and molecular studies of Human T cell lymphotropic virus type II, Subtype b, in isolated groups of Mataco and Toba Indians of Northern Argentina.
    AIDS RES. and Human Retrovirus 15: 407-417.

  • Eterradossi, N., Arnauld, C., Tekaia, F., Toquin, D., Le Coq, H., Rivallan, G., Guittet, M., Domenech, J., van den Berg, T.P. and Skinner, M.A. (1999)
    Antigenic and genetic relationships between European very virulent infectious bursal disease viruses and an early West-African isolate.
    Avian Pathology 28: 36-46.

  • Ozier-Kalogeropoulos, O., Malpertuy, A., Boyer, J., Tekaia, F., Dujon, B. (1998)
    Random exploration of the kluyveromyces lactis genome and comparison with that of Saccharomyces cerevisiae.
    Nucleic Acids Res. 26(23):5511-24. [Abstract] [Article Text] [Article PDF]

  • Cole, S.T., Brosch, R., Parkhill, J., Garnier, T., Churcher, C., Harris, D., Gordon, S.V., Eiglmeier, K., Gas, S., Barry, C.E. 3rd, Tekaia, F., Badcock, K., Basham, D., Brown, D., Chillingworth, T., Connor, R., Davies, R., Devlin, K., Feltwell, T., Gentles, S., Hamlin, N., Holroyd, S., Hornsby, T., Jagels, K., Barrell, B.G., et al. (1998)
    Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.
    Nature 393(6685):537-44. [Abstract] [Article1 Text] [Article1 PDF] [Article2 Text] [Article2 PDF]

  • Murphy, E.L., Mahieux, R., de The, G., Tekaia, F., Ameti, D., Horton, J., Gessain, A. (1998)
    Molecular epidemiology of HTLV-II among United States blood donors and intravenous drug users: an age-cohort effect for HTLV-II RFLP type aO.
    Virology 242(2):425-34. [Article PDF]

  • Mahieux, R., Ibrahim, F., Mauclere, Ph., Herve, V., MichelI, Ph., Tekaia, F., Chappey, C., Garin, B., Van Der Ryst, E., Guillemain, B., Ledru, E., Delaporte, E., De Tthe, G. and Gessain A. (1997)
    Molecular Epidemiology of 58 New African Human T-Cell Leukemia Virus Type 1 (HTLV-1) Strains : Identification of a New and Distinct HTLV-1 Molecular Subtype in Central Africa and in Pygmies.
    Journal of Virology 71 p.1317-1333. [Article PDF]

  • Snewin, V. A., Khouri, E., Mattei, D., Tekaia, F., Delarue, M., Mendis, K. N. and David, P. H. (1996)
    Cloning and characterisation of a gene from Plasmodium vivax and P. knowlesi: homology with valine-tRNA synthetase.
    Gene 173 p.137-145. [Article PDF]

  • Testut, P., Renard, C-A., Terradilos, O., Vitvitski-Trepo, L., Tekaia, F., Degot, C., Blake, J. Boyer, B. and Buenda, A. (1996)
    A new Hepadnavirus Endemic in Arctic Ground Squirrels in Alaska.
    Journal of Virology 70 p.4210-4219. [Article PDF]

  • Tuppin P, Gessain A, Kazanji M, Mahieux R, Cosnefroy JY, Tekaia, F., Georges-Courbot MC, Georges A, de The G.
    Evidence in Gabon for an intrafamilial clustering with mother-to-child and sexual transmission of a new molecular variant of human T-lymphotropic virus type-II subtype B.
    J Med Virol. 1996 Jan;48(1):22-32.
    ([Abstract])

  • Granger, B., Tekaia, F., Le Sourd, A.M., Rakic, P. and Bourgeois, J.P. (1995)
    Tempo of Neurogenesis and Synaptogenesis in the Primate Cingulate Musocortex: Comparison with the Neocortex.
    The journal of Comparative Neurology 360:363-376.
    ([Abstract])

  • Mauclere P, Mahieux R, Garcia-Calleja JM, Salla R, Tekaia, F., Millan J, De The G and Gessain A.
    A new HTLV tyep II subtype Q isolate in an HIV type 1-infected prostitute from Cameroon Central Africa.
    AIDS Res Hum Retroviruses. 1995 Aug;11(8):989-93.
    ([Abstract])

  • Gessain, A., Mauclere, P., Froment, A., Biglione, M., Le Hesran, J.Y., Tekaia, F., Millan, J. and de The G. (1995)
    Isolation and molecular characterization of a human T Lymphotropic virus type II, subtype B, from a healthy Pygmy living in a remote area of Cameroun: an ancient origin for HTLV-II in Africa.
    CProc. Natl. Acad. Sci. 92 p. 4041-4045. [Article PDF]

  • LEFEVRE, S., HUBERT, B., Tekaia, F., BRAHIC, M. and J.F., BUREAU (1995)
    Isolation from human brain of six previously unreported cDNAs related to the reverse transcriptase of human endogenous retroviruses.
    AIDS Research and Human Retroviruses 11 p.231-237. Mary Ann Libbert, Inc., Publishers
    ([Abstract])

  • RIVIERE, Y. McCHESNEY, M. B., PORROT, F., TANNEAU-SALVADORI, F., SANSONETTI, PH., LOPEZ, O., PIALLOUX? G., FEUILLIE, V., MOLLEREAU, M., CHAMARET, S., Tekaia, F. and MONTAGNIER, L. (1995)
    Gag-Specific Cytotoxic Responses to HIV Type 1 Are Associated with a Decreased Risk of Progression to AIDS-Related Complex or AIDS.
    AIDS Research and Human Retroviruses 11 p.903-907. Mary Ann Liebert, Inc.

  • Maheux, R., Gessain, A., Truffert, A., Vitrac, D., Hubert, A., Dandelot, J., Monchamp-Moreau, C, Cnudde, F., Tekaia, F. and De The, G. (1994)
    Seroepidemiology, Viral Isolation, and Molecular Characterization of Human T cell Leukemia/Lymphoma Virus Type I from La Reunion Island, Indian Ocean.
    AIDS Research and Human Retroviruses 10 p. 745-752.
    ([Abstract])

  • Ureta Vidal, A., Gessain, A., Yoshida, M., Tekaia, F., Garin, B., /a F, Millan J, De ThGuillemain, M., Schulz, T., Farid, R. and de The G. (1994)
    Phylogenetic classification of HTLV-I genotype in 5 major molecular and geographical subtypes.
    Journal of General Virology 75 p.3655-3666.
    ([Abstract] [Article pdf])

  • Ureta Vidal, A., Gessain, A., Yoshida, M., Mahieux, R., Nishioka, K., Tekaia, F., Rosen, L. and de The G. (1994)
    Molecular Epidemiology of HTLV Type I in Japan: Evidence for two distinct ancestral lineages with a particular geographical distribution.
    AIDS Research and Human Retroviruses10 p.1557-1566.
    ([Abstract] [Article pdf])

  • Bonnefoy, S., Attal, G., Langsley, G., Tekaia, F. and Mercereau-Puijalon, O. (1994)
    Molecular characterization of the heat shock protein 90 gene of the human malaria parasite Plasmodium falciparum.
    Molecular and Biochemical Parasitology 67 p.157-170.
    ([Abstract])

  • Bizet, C., Picard, B., Tekaia, F. and Goullet, P. (1993)
    Electrophoretic Patterns of Esterases and Lactate- and Malate-Dehydrogenases from Alcaligenes Species.
    Current Microbiology 27 p.79-84.
    C([Article pdf])

  • Bizet, Tekaia, F. and Philippon A. (1993)
    In-vitro susceptibility of Alcaligenes faecalis compared with those of other Alcaligenes spp. to antimicrobial agents including seven beta-lactams.
    J. Antimicrob. Chemother 32(6) p.907-910.
    ([Article pdf])

  • TARDY-PANIT, M., BLONDEL, B., MARTIN, A., Tekaia, F., HORAUD, H. and DELPEYROUX, F. (1993)
    A mutation in the RNA Polymerase of Poliovirus Type 1 Contributes to Attenuation in Mice.
    Journal of Virology 67 p.4630-4638.
    ([Abstract] [Article pdf])

  • Weyer, A., de Blay F., Hirth, C. , Marchand, F. , Tekaia, F. , Pauli , G. , David , B. (1992)
    Mite allergen exposure and spontaneous histamine release in monosensitive and polysensitive mite allergic patients.
    Allergy 48: p.12-18
    ([Abstract])

  • WEYER, A., GUINNEPAIN, M.A., SUTRA, J.P., BORGNON, A., HERPIN-RICHARD, N., ICKOVIC, M.R., MEAUNE, J., RAFFARD, M. and Tekaia, F. (1990)
    Seasonal increase of spontaneous histamine release in washed leucocytes from rhinitis patients sensitive to grass pollen.
    Clinical and experimental Immunology 79 p.385-391.
    ([Abstract] [Article pdf])

  • Tekaia, F., SANSONETTI, Ph., CLAVERIE, J.M. (1990)
    Estimation du stade de l'infection par le VIH chez les sujets seropositifs.
    Les Cahiers de l'Analyse des Donnees XV p. 261-278. Dunod, Paris.
    ([Numerical link] [Article pdf])

  • Tekaia, F. (1990)
    Analyse statistique et recherche des facteurs pronostiques dans la pathogenese du SIDA.
    Les Cahiers de l'Analyse des Donnees XV p. 257-260. Dunod, Paris
    2-lactams
    ([Numerical link] [Article pdf])

  • BARC, M.C, Tekaia, F., BOURLIOUX, P. (1989)
    In vivo standardization of cutaneous bacterial activity of antiseptics by using monoxenic hairless mice.
    Applied and Environmental Microbiology 55,8: p-1911-5.
    ([Abstract] [Article pdf])

  • Le MAO J., PAULI G., Tekaia F., HOYET C., BISCHOFF E., DAVID B. (1989)
    Guanine content dermatophagoides pteronyssinus allergens in house dust samples.
    Journal of Allergy and Clinical Immunology. 83,5: p.926-933.
    ([Abstract])

  • Claverie J.M, Kourilsky, Ph., Langlade-Demoen, P., Chalufour Prochnicka, A., Dadaglio, G., Tekaia, F., Plata, F., Bougueleret, L. (1988)
    T-immunogenic peptides are constituted of rare sequence patterns. Use in the identification of T epitopes in the human immunodeficiency virus gag protein.
    Eur. J. Immunol. 18: p.1547-1553.
    ([Abstract])

  • Tekaia F., de SAINT MARTIN J., SANSONETTI Ph., VUILLIER F., CLAVERIE J.M. (1988)
    Interet de l'antigenemie dans la definition des stades de l'infection par le virus VIH.
    Les Cahiers de l'Analyse des Donnees. XIII,4: p.407-424. Dunod, Paris.
    ([Numerical link] [Article pdf])

  • Bougueleret, L., Tekaia F., Sauvaget, I., Claverie, J.M. (1988)
    Objective comparison of exon and intron sequences by the mean of 2-dimensionnal data analysis methods.
    Nucleic Acids Res. 16,5: p.1729-1738.
    ([Abstract] [Article pdf])

  • Tekaia F., DERLOT, E., CLAVERIE, J.M. and COURVALIN, P. (1987)
    Controle de qualite des etudes multicentriques d'evaluation de l'activite in vitro des Antibiotiques.
    Path Biol. 35,5 bis: p. 687-691.

  • GASSE F., Tekaia F. (1983)
    Transfert function for estimating paleoecological conditions (pH) from East African Diatoms.
    Hydrobiologia 103 p.85-90. Dr. W. Junk Publishers, The Hague.
    ([Article pdf])

  • Tekaia F. (1983)
    Cadre methodologique pour l'analyse des donnees medicales.
    Cinesiologie XXII: p.187-198. Paris.

  • GASSE F., Tekaia F. (1982)
    Tentative definition, comparison and interpretation of fossil diatom assemblages from Eastern Africa.
    Acta Geologica Academiae Scientiarum Hungaricae 25 (1-2): p.135-147. Publishing House of the Hungarian Academy of Sciences, Budapest.

  • Tekaia F., FOUILLOT J.P, DROZDOWSKI T., REGNARD J., SPEYER J.J et RIEU M. (1981)
    Incidence des contraintes psychique et intellectuelle sur la frequence cardiaque.
    Les Cahiers de l'Analyse des Donnees VI,2 p.175-185. Dunod, Paris.
    ([Numerical link] [Article pdf])

  • FOUILLOT J.P, Tekaia F. (1979)
    Elaboration d'un langage commun entre medecins et sportifs par l'analyse des donnees.
    Les Cahiers de l'Analyse des Donnees IV,2: p.231-252. Dunod, Paris.
    ([Numerical link] [Article pdf])

  • GASSE F., Tekaia F. (1979)
    La paleoecologie des Diatomees: evolution des lacs de l'Afar Central.
    Les Cahiers de l'Analyse des Donnees IV,1: p.81-94. Dunod, Paris.
    ([Numerical link] [Article pdf])



    Book and contributions to chapters in books
  • Tekaia, F. (2010)
    Fiches 49-54. pp173-189.
    FFIn "Bioinformatique: Principes d'utilisation des outils"
    Tagu, D. and Risler, J-L. Eds. QUAE Editions ISBN 978-2-7592-0870-8) (2010).

    Fiche 49 : p. 173-174.
    Comparaison des genomes: introduction
    Fiche 50: p. 175-179.
    Comparaison de genomes:evenements de speciation et de duplication
    Fiche 51: p. 180 - 182.
    Comparaison des genomes: Orthologie, paralogie
    Fiche 52: p. 183 - 184.
    Comparaison de genomes: p. 183 - 184
    Fiche 53: p. 185 - 186.
    Comparaison de genomes: Classification des especes tenant compte delur contenu genetique
    Fiche 54: p. 188 - 189.
    Comparaison de genomes: References bibliographiques
  • A. Castebois, K. Lambou, J.Wong, Tekaia, F. (2008)
    bAspergillus Fumigatus specificities as deduced from comparative genomics. p.29-38.
    in Aspergillus fumigatus and Aspergillosis. J-P Latge and W.J Steinbach Editors. ASM press - Washington, D.C.

  • R. Brosch, S.V. Gordon, K. Eiglmeier, T. Garnier, F. Tekaia, E. Yeramian and S.T. Cole (2000)
    Genomics, Biology, and Evolution of the Mycobacterium tuberculosis Complex. p. 19-36.
    in Molecular Genetics of Mycobacteria. editCed by Graham F. Hatfull and William R. Jacobs, Jr. ASM Press- Washington, D.C.

  • Tekaia, F., SANSONETTI, Ph., CLAVERIE, J.M. (1992)
    Estimation de stade de l'infection par le VIH chez les sujets seropositifs.
    bIn J.-P & F. Benzecri et col. pratique de l'analyse des donnees en Medecine Pharmacie Physiologie clinique p. 93-104. statmatic Paris.

  • Tekaia, F., BIMET, F., SANSONETTI, Ph., RIOU J.Y., SAUVAGET I. and CLAVERIE J.M. (1989)
    Relational Biomedical Data Bases p.483-497.
    7th European ORACLE Users Group Conference BRUSSELS - BELGIUM.

  • Tekaia F., FLANDROIS J.P., CLAVERIE J.M., COURVALIN P. (1988)
    Etude multicentrique : Expression et modalite de lecture des resultats. p.147-195.
    In P.Courvalin et coll. ed. L'antibiogramme automatise MPC/VIGOT. Bruxelle/Paris.

  • Tekaia F., FLANDROIS J.P., CLAVERIE J.M., COURVALIN P. (1988)
    Evaluation des reponses des automates. p.41-48.
    In P. Courvalin et coll. ed. L'antibiogramme automatise MPC/VIGOT. Bruxelle/Paris.

  • FOUILLOT J.P., POLI G., P., Tekaia F., LE HOUEZEC R., BLOT P, SUREAU C. (1986)
    A comparison of seven fetal heart rate ultrasound detector systems, versus scalp ECG monitoring during labor. p.327-333.
    In C. Dal Palu and A.C.Pessina ed. Proceeding of the fifth International Symposium on Ambulatory Monitoring. CLEUP Editore. Padova, ITALY.

  • FOUILLOT J.P., REGNARD J., J., SPEYER J. J., Tekaia F., DROZDOWSKI T.,LEBLANC A., RIEU M. (1986)
    Ambulatory monitoring of air crew heart rate variability. p.429-436.
    In C. Dal Palu and A.C.Pessina ed. Proceeding of the fifth International Symposium on Ambulatory Monitoring. CLEUP Editore. Padova, Italy.

  • Tekaia F., FOUILLOT J.P., LEBLANC A., GALLARDON F., RIEU M. (1986)
    The nearest neighbours : application to workload and heart rate variability. 399-406.
    In C. Dal Palu and A.C.Pessina ed. Proceeding of the fifth International Symposium on Ambulatory Monitoring. CLEUP Editore. Padova, ITALY.

  • Tekaia F., BIDEL M. (1985)
    LOGISTAT, Analyse Statistique des Donnees. 349 p.
    SYBEX Editions Microinformatique Paris.

  • FOUILLOT J.P, DROZDOWSKI T., Tekaia F., REGNARD J., IZOU M.A, FOURNERON T., LEBLANC A., RIEU M. (1982)
    Methodology of heart rate ambulatory monitoring recordings sports' training and workload studies p.377-383.
    In E.D Stott, E.B Raftery, D.L. Clement and S.L. Wright (ed.), ISAM-GENT-1981. Academic Press, London.

  • Tekaia F., RIEU M. (1982)
    Methodology of heart rate histogramms analysis by means of factor analysis of correspondances p.469-477.
    In E.D Stott, E.B. Raftery, D.L. Clement and S.L. Wright (ed.), ISAM-GENT-1981. Academic Press, London.


    Conferences and Workshops

    Fredj Tekaia (2013)
    Lectures on Bioinformatics, Genomes and related Bibliographics Resources
    Tunisia (December 16-23, 2013).

    Fredj Tekaia, Edouard Yeramian (2009)
    Efficient Classification of Orthologues and in-Paralogues based on Super-Partitions (Poster D17)
    ISMB2009
    Stockholm; Sweden - June 27 - July 2, 2009.

    Fredj Tekaia (2008)
    Trends in proteome evolution
    Instituto Oswaldo Cruz (FIOCRUZ) 27-06-2008
    DRio de Janeiro - Brasil

    RECOMB2008 (2008)
    National University of Singapore; Singapore - 30th March - 2nd April, 2008.
    RECOMB2008 )v

    Qatar Foundation International Research in Sciences and Technology (2007)
    QFIRST2007: Doha, 9-13 December, 2007.
    QFirst2007

    Bioinformatique, Modelisation des Systemes Biologiques (2007)
    Journees 2007, ACI-IMPBIO-GDR BIM.
    4-5 Octobre, Institut Henri Poincarre, Paris.

    Fredj Tekaia, Edouard Yeramian (2007)
    Exploring Evolutionary Trends in Proteomes using Aminod Acids Compositions.
    15th ISMB Conference
    Vienna, 21-25 July, 2007
    ISMB2007

    Fredj Tekaia (2007)
    Clustering of paralogs and of orthologs (SuperPartitions of Orthologs).
    Labri - Universite Bordeaux 1 - June 19, 2007.
    Clustering of Proteins Workshop.

    Fredj Tekaia (2007)
    Exploring evolutionary Trends in Proteomes.
    Institut Pasteur Tunis - March 18 - April 07 - 2007.
    Bioinformatics and Comparative Genome Analysis course.

    Fredj Tekaia (2007)
    Evolution of Proteomes: Signature and Trends in Amino Acid Compositions.
    INSERM U722
    Faculte de Medecine, Xavier Bichat
    16 rue Henri Huchard
    75018 Paris
    February 08, 2007.

    Fredj Tekaia (2007)
    Exploring Evolutionary Trends in Proteomes: Using Correspondence Analysis and Classification Methods.
    Workshop: Statistical methods for post-genomic data
    Paris, January 15-16, 2007.

    Fredj Tekaia (2006)
    Construction of Genome Trees from Conservation Profiles of Proteins.
    Carry-Le-Rouet(13)- France.
    December 11-14, 2006.
    Ecole Phylogenomique INRA

    Fredj Tekaia and Edouard Yeramian (2006).
    Exploring Evolutionary Trends in Proteomes using Correspondence Analysis.
    Bioinformatics In Taiwan Symposium and Workshop
    September 13-14, 2006.
    Biotechnology Center, National Chung Hsing University
    Taichung, Taiwan
    Bioinformatics In Taiwan 2006.

    Fredj Tekaia and Edouard Yeramian (2006).
    Evolution of Proteomes: Signature and Trends in Amino Acid Compositions.
    Taiwan-France Joint Symposium on Bioinformatics and Genomics
    September 11, 2006.
    National Yang-Ming University
    Taipei, Taiwan
    Taiwan-France Joint Symposium on Bioinformatics and Genomics

    Fredj Tekaia and Edouard Yeramian (2006).
    Genome Trees from Whole Proteome Comparisons.
    Taiwan-France Joint Symposium on Bioinformatics and Genomics
    September 11, 2006.
    National Yang-Ming University
    Taipei, Taiwan
    Taiwan-France Joint Symposium on Bioinformatics and Genomics

    Tekaia, F., Yeramian, E. (2006).
    Evolutionary Trends in Proteomes: Exploring the Multidimensional Contributions.
    ISMB2006, Fortaleza, Brasil. 6-10 August 2006.
    ISMB2006

    Tekaia, F., Latge, JP., Yeramian , E. (2006).
    Tentative determination of thermostable proteins in A.fumigatus, using amino-acid composition and correspondence analysis.
    ISHAM 2006; Le Palais des Congres Paris. 26 - 29 June
    ISHAM06

    Tekaia, F., Yeramian, E. (2006).
    Evolutionary Signatures in Amino Acid Composition of Proteomes.
    Journee Departementales: Genomes and Genetics.
    Institut Pasteur Paris June 7 - 8, 2006.

    Tekaia, F., Yeramian E. (2006).
    Evolutionary Trends in Proteomes: Exploring the Multidimensional Contributions.
    Phylogenomics Conference.
    Sainte Adele (near Montreal) - Quebec - Canada. 15 - 19 March 2006.

    Tekaia, F. (2005).
    Large scale proteome comparisons
    Centre de Biotechnologie de Sfax - Tunisia.
    March 23 - April 2, 2005.
    Bioinformatics and Genome Data Analysis course

    Tekaia, F., Yeramianan, E. (2004).
    CGenome tree based on gene conservation profiles.
    Workshop: Structural approaches to sequence evolution: Molecules, networks, populations.
    Dresden (Germany) July 5 - 10, 2004.
    strapp04

    Tekaia, F. and Genolevures consortium (2004).
    Detecting selection in yeasts using codons volatility.
    Journee departementales : Structure et Dynamique des Genomes.
    Institut Pasteur 10 - 11 juin, 2004.

    Tekaia, F. (2004).
    Analyses comparatives des proteomes - Evolution des genomes.
    Journees thematique de Bioinformatique.
    Institut Pasteur 24 mars 2004.

    Tekaia, F. (2003).
    In silico analysis of Anopheles gambiae predicted proteome.
    GPH anopheles. Paris. October 1rst, 2003.

    Tekaia, F. (2003)
    Genome trees from large scale proteome comparisons.
    Journees Departementale (Structure et Dynamique des Genomes)
    Institut Pasteur de Paris; 4-5 Juin.

    Tekaia, F. (2003)
    Genome trees from large scale proteome comparisons.
    May 31, 2003. Faculte de Medecine de Sfax. Tunisia.

    Tekaia, F. (2003)
    Genome trees from large scale proteome comparisons.
    CICoBiCoBi 2003 : 1st International Conference on Bioinformatics and Computational Biology.
    May 14-16, 2003. Ribeirao Preto, SP, Brazil.
    IcobiIcobi

    Tekaia, F. (2003)
    Amino acid composition of genomes, lifestyles of organisms and evolutionary trends: a large-scale analysis
    Recomb2003, April 10-13, 2003, Berlin (Germany).

    Tekaia, F. (2002)
    Proteome comparisons: Bioinformatics view.
    Institut Pasteur Tunis (Tunisia), July 22, 2002.

    Tekaia, F. (2002)
    Proteome comparisons
    ENIS - University of Sfax (Tunisia) June 3, 2002.

    Tekaia, F. (2001)
    Bioinformatics and comparative genomics
    Euro-Mediterranean Network for health of Population
    Tunis (Tunisia) April 26-29, 2001.

    Tekaia, F. (2000)
    First Meeting of the Galar Fungail Research Network.
    Salamanca (Spain). September 30 - October 2, 2000.

    Tekaia, F. (2000)
    Introduction to Bioinformatics and to Genome Analysis.
    University of Ribeirao Preto, Sao Paulo. Brazil. August, 17Comparaison des g, 2000.

    Tekaia, F. (2000)
    Whole Proteome Comparisons: Ancestral Duplication, Conservation and Organisms Classification.
    Molecular Evolution 2000: Symposium celebrating the centenary of the Oswaldo Cruz Institut.
    Rio de Janeiro, august 13-15, 2000.

    Tekaia, F. (1999)
    The Genomic Tree: an approach towards whole-genome phylogeny.
    Third Annual Conference on Computational Genomics.
    CBaltimore (USA) 18 - 20 Novembre 1999.

    Tekaia, F. (1999)
    L'arbre Genomique et le programme Genolevures.
    Journee Departementale (Biotechnologie)
    Institut Pasteur le 28-29 Septembre 1999.

    Tekaia, F. (1999)
    Bioinformatique, Genomique Comparative et Enseignement
    University of the Centre of Tunisia
    Sousse (Tunisie) July 24, 1999.

    Tekaia, F. (1999)
    Genomique Comparative
    Institut Pasteur de Dakar
    Dakar (Senegal) Jun 25, 1999.

    Tekaia, F. (1999)
    Whole proteome comparisons: Insights into ancestral duplication, conservation and organisms classification.
    MEEGID IV: Fourth International Meeting on Molecular Epidemiology and Evolutionary Genetics of Infectious Diseases.
    Dakar (Senegal) Jun 21-24, 1999.

    Tekaia, F. (1998)
    L'arbre genomique revele par les comparaisons systematiques des genomes completement sequences.
    Journees "alphy" (alignement et phylogenie)
    Lyon February 11-12, 1998.

    Tekaia, F. (1998)
    Comparaison systematique des genomes completement sequences: Duplication-conservation et familles de genes orthologues.
    Institut Pasteur de Tunis July 24, 1998.

    Tekaia, F. (1998)
    Comparaison systematique des genomes completement sequences
    Information Genetique et Structurale - CNRS
    Marseille Jun 2, 1998.

    Tekaia, F. (1998)
    Systematic comparisons of predicted proteomes from seventeen completely sequenced organisms.
    EBI (European Bioinformatics Institut)- Cambridge (England). April 29, 1998.

    Tekaia, F. (1998)
    bSystematic comparisons of predicted proteomes from completely sequenced organisms: statistics on ancestral duplication and conservation.
    "Getting the Most from Structure-Function Based Genomics" workshop.
    SmithKline Beecham Pharmaceuticals.
    Harlow London (England) le 27 Avril, 1998.

    Tekaia, F. (1997)
    Biocomputing in the Genome Era.
    "Recent Advances in Molecular Genetics of the Magreb and Middle East Populations".
    Hammamet (Tunisia) December 16 - 20 1997.

    Tekaia, F. (1997)
    Whole genome comparisons: gene duplication and conservation in systematically sequenced organisms.
    German Conference on Bioinformatics GCB'97.
    (Kloster Irsee (Germany) 22-24 Sept 1997).

    Tekaia, F. (1997)
    Whole genome comparisons in Systematically sequenced organisms
    Invited by the Departement of Microbiology at University of Mexico.
    Mexico April 7-10 1997.

    Tekaia, F. (1997)
    Whole genome comparisons : Yeast versus 8 other organisms.
    Eleventh International Conference on Mathematical and Computer Modelling and Scientific Computing.
    Washington (USA) 31 Mars - 3 Avril 1997.

    Tekaia, F. (1994)
    Some practical aspects in molecular phylogeny studies.
    HTLV European Research Network
    Molecular Epidemiologie of HTLVs Workshop.
    Paris, december 10, 1994.

    Tekaia, F. (1994)
    L'Internet au service des biologistes.
    Seminaire National de la recherche et de la technologie.
    Tunis 21-22 Juin 1994.

    DERLOT, E., CARLIER, C., Tekaia, F., QUINTILIANI Jr, R. and COURVALIN, P. (1993)
    Accuracy of the E test for detection of glycopeptide resistance in enterococci. R.I.C.A.I.
    Paris le 3 Decembre 1993.

    Tekaia F., AYERBE C., SANSONETTI Ph. (1991)
    Biological prognostic factors in progression to ARC and AIDS stages.
    Seventh International Conference on AIDS.
    Florence 1Comparaison des g6-21 June 1991 Italy.

    AYERBE C., Tekaia F., SANSONETTI Ph., CLAVERIE J.M (1990)
    Determination of prognostic factors in HIV infected patients. p.115
    International Society for Clinical Biostatistics 11th Meeting.
    Nimes France. sept. 18-21.

    Tekaia F., SANSONETTI, Ph., CLAVERIE J.M (1990)
    Estimation of stages in HIV infected patients. p.160
    International Society for Clinical Biostatistics 11th International Meeting.
    Nimes France sep. 18-21.

    Tekaia, F., SANSONETTI, Ph., de SAINT MARTIN J., VUILLIER F., DIGHIERO G.and CLAVERIE J.M. (1989)
    Topology and prediction of stages in HIV infected patients according to biological parameters. p.384-385 Book 2.f
    Contributed Papers of the 47th session of the International Statistical Institut Paris 1989. Paris FRANCE.

    Tekaia F., de SAINT MARTIN J., SANSONETTI Ph., CLAVERIE J.M. (1988)
    C p. 183 Application of Correspondance Analysis for the evaluation of HIV-Antigenemia interest. p.88.
    The XIVth International Biometric Conference. Abstracts contributed papers. Namur (Belgium) July 18-July 23. Societe Adolphe Quetelet ed.
    B-5800 Gembloux Belgium.

    Tekaia F., CLAVERIE J.M, COURVALIN P., FLANDROIS J.P. (1988)
    Use of Correspondance Analysis in the evaluation of automated systems for bacteria classification. p.42.
    The XIVth International Biometric Conference. Abstracts contributed papers. Namur (Belgium) July 18-July 23. Societe Adolphe Quetelet ed.
    B-5800 Gembloux Belgium.

    Tekaia F., BIDEL M. (1987)
    Performing Correspondence Analysis on an Apple IIe.
    COMPSTAT 86. Short communications p.197-198.
    Dipartimento di Statistica Probalita e Statistiche Applicate. Universita "La Sapienza" Roma.


    Fredj Tekaia