Species versus codons usage in completely sequenced genomes

orgTTTTTCTTATTGCTTCTCCTACTGATTATCATAATGGTTGTCGTAGTGTCTTCCTCATCGCCTCCCCCACCGACTACCACAACGGCTGCCGCAGCGTATTACTAATAGCATCACCAACAGAATAACAAAAAGGATGACGAAGAGTGTTGCTGATGGCGTCGCCGACGGAGTAGCAGAAGGGGTGGCGGAGGG
SC27.018.526.527.012.65.613.610.730.216.918.420.921.711.312.111.023.614.219.08.813.46.917.65.319.812.317.88.220.112.316.36.319.014.31.00.513.77.626.712.236.224.442.330.537.819.945.519.58.25.00.610.56.22.73.11.814.510.021.09.622.69.811.26.2
SP33.112.926.724.025.27.28.96.535.012.413.920.628.910.412.68.430.712.218.58.321.58.012.94.623.110.514.56.729.411.216.15.422.411.71.20.416.46.227.210.934.317.640.124.137.915.544.520.79.15.60.411.215.15.98.13.015.19.211.45.220.68.215.94.5
CE24.124.29.920.221.214.98.012.232.719.09.626.124.113.59.914.416.810.620.412.19.04.525.89.719.110.419.98.922.212.519.88.317.713.91.10.414.09.127.014.130.618.538.325.835.817.140.724.211.39.10.711.011.25.111.94.612.18.315.33.911.06.731.24.4
DM13.421.84.516.49.213.98.438.316.722.79.523.411.213.76.527.97.119.57.916.57.218.113.915.99.821.311.014.514.633.112.913.911.018.40.0.10.715.915.936.321.225.916.839.327.724.321.542.85.513.10.9.98.917.88.78.411.720.45.36.513.326.017.84.7
AG14.417.97.011.89.512.88.429.712.921.89.017.212.212.910.223.78.613.311.020.38.110.113.822.19.416.614.521.916.619.819.722.48.717.26.04.013.516.818.522.513.722.221.224.420.320.023.823.711.917.59.915.413.319.319.220.510.219.710.99.815.221.617.811.4
CALBI30.014.038.834.010.42.85.94.240.012.918.017.726.37.99.710.420.08.827.16.913.14.524.03.126.211.719.54.121.710.016.22.425.89.61.10.615.65.337.17.748.318.653.619.445.713.251.213.28.91.90.49.76.10.95.21.317.95.021.03.124.24.414.67.5
ATH22.620.113.321.424.115.610.210.121.818.113.224.427.112.410.317.225.210.918.59.118.25.216.18.317.410.016.07.627.09.717.48.615.213.40.90.614.28.519.814.923.320.731.532.437.417.035.432.311.07.31.112.68.73.76.44.914.511.319.211.021.48.823.310.1
HS21.317.510.815.016.318.39.129.815.414.410.118.311.511.67.919.916.917.716.24.920.720.821.08.613.916.016.85.618.322.117.37.711.710.88.45.614.315.616.228.115.814.825.524.115.416.423.825.815.816.714.320.34.98.35.89.513.519.520.518.111.519.520.417.5
FR14.923.14.911.49.721.15.045.811.827.46.122.911.319.35.229.813.520.110.57.214.618.314.29.510.521.313.210.517.725.613.19.38.719.90.00.08.219.19.736.811.127.122.631.717.833.120.244.810.513.30.012.55.911.25.98.510.221.511.814.611.920.617.814.0
PF36.57.147.010.58.71.86.01.535.86.350.222.015.22.415.74.914.65.116.53.07.82.19.01.010.54.821.73.88.12.18.31.150.86.21.20.320.73.523.93.7123.420.095.621.555.78.760.810.415.42.30.55.03.00.42.40.320.43.916.04.411.81.312.42.8
ECUN25.821.93.910.724.616.69.729.420.821.324.430.020.815.310.024.216.113.38.012.49.47.99.17.47.19.814.39.59.412.820.57.716.819.41.00.79.210.16.016.715.623.317.353.324.230.327.053.87.213.21.07.92.12.83.15.79.820.024.328.86.011.326.621.2
MJ33.78.952.519.09.43.38.62.248.710.745.622.043.14.715.05.710.62.814.50.88.51.322.31.414.74.319.81.724.35.422.52.433.810.00.00.010.34.19.35.337.415.572.930.945.49.751.834.68.84.10.07.30.30.10.40.111.15.327.79.913.14.235.710.3
MTH10.326.04.22.424.635.14.623.411.922.242.829.323.520.610.222.95.413.420.72.89.116.111.26.44.819.220.84.710.927.028.46.79.722.41.10.88.010.71.317.610.822.217.328.230.528.431.949.34.57.51.78.44.73.71.14.77.611.212.341.124.716.620.517.6
AF18.327.55.811.023.624.34.925.528.220.822.825.338.515.010.522.36.59.39.27.17.711.48.411.18.111.810.011.920.819.720.916.78.427.80.20.14.310.83.115.010.122.024.344.322.126.628.360.62.69.30.310.50.92.51.51.34.718.722.529.813.417.725.216.2
PH23.922.021.511.825.617.518.28.625.917.144.522.935.511.317.512.110.29.711.64.612.110.217.55.113.610.710.610.121.616.318.47.219.718.61.20.88.06.97.98.418.416.831.246.030.911.640.741.93.13.21.611.71.21.11.00.910.312.120.130.115.17.131.515.7
PA16.427.116.814.721.320.718.610.621.115.448.423.239.215.013.613.56.97.29.05.39.310.016.96.511.111.08.111.920.219.416.810.414.024.20.00.05.79.37.39.313.020.424.553.527.518.535.652.82.53.00.011.81.01.20.90.77.514.016.936.715.511.030.216.2
APEM6.121.34.87.216.838.418.028.08.012.431.419.621.022.614.629.09.115.57.010.817.924.29.113.18.916.110.611.024.736.913.519.612.720.80.92.46.113.03.115.94.515.87.827.512.625.911.554.33.26.10.913.13.86.82.67.06.725.811.245.514.932.612.025.7
TA15.331.94.06.820.419.06.228.212.522.455.430.921.116.114.120.810.516.116.112.48.36.412.412.56.913.413.414.012.720.822.413.620.326.10.0.8.87.72.918.719.023.517.338.937.419.928.131.51.44.70.8.53.25.22.02.74.816.015.626.215.025.022.410.0
TV25.421.813.811.824.912.413.011.721.714.655.727.024.110.525.111.917.110.318.69.011.84.114.57.414.38.017.08.719.113.123.57.925.521.80.10.18.56.78.512.626.021.433.934.836.917.840.223.22.34.00.18.43.22.52.42.07.812.616.820.217.019.222.511.2
H1.829.20.76.63.339.71.131.92.132.90.717.26.450.01.837.71.012.02.218.61.018.13.524.22.731.83.829.85.157.38.260.32.422.80.71.01.920.43.722.21.120.15.710.89.081.015.751.03.14.21.810.64.033.14.621.12.615.90.81.27.349.84.823.0
SSP226.518.141.016.115.47.119.25.633.611.349.320.627.57.328.012.215.37.715.64.812.45.616.04.320.16.913.86.422.37.319.27.131.116.90.40.38.34.715.75.533.016.739.637.534.112.438.429.34.32.10.210.71.80.71.40.716.67.325.317.621.86.825.89.9
PFU26.018.219.614.024.217.017.78.332.613.640.522.035.210.619.113.99.16.310.32.510.79.219.83.014.97.615.95.721.113.724.65.921.418.41.30.87.08.09.67.917.816.938.142.627.515.948.340.43.72.31.712.31.21.11.20.710.210.827.821.112.47.736.814.0
STO31.513.748.110.118.65.616.43.840.29.149.620.529.35.529.58.319.14.917.03.314.34.217.13.422.04.417.04.125.45.220.93.936.012.72.00.69.63.515.65.234.813.851.628.136.69.546.923.14.71.81.110.11.40.50.90.416.75.726.211.923.75.426.27.3
YAE19.316.920.518.114.720.013.119.122.511.328.917.718.617.820.537.210.28.36.97.69.717.88.313.913.57.610.612.315.639.014.729.217.225.71.71.23.711.410.110.79.816.128.727.915.127.719.849.94.04.71.014.73.29.01.85.64.012.218.627.04.936.612.722.2
MA34.337.64.57.326.621.52.221.825.227.220.816.221.920.517.510.912.820.96.05.114.514.08.47.711.914.610.55.815.516.515.95.920.817.14.92.316.210.77.421.624.721.033.226.527.219.736.921.211.116.46.58.36.16.15.17.812.015.012.314.214.816.520.613.8
MK2.426.35.311.35.635.09.135.34.733.99.516.69.937.714.443.22.913.73.614.25.518.14.925.94.318.43.619.49.234.36.433.33.125.00.80.63.915.43.210.82.516.69.330.816.141.725.873.84.78.42.012.311.216.210.622.43.78.05.916.921.919.317.721.3
MMA25.017.89.26.134.617.23.823.229.922.224.223.922.414.718.812.913.313.114.05.416.68.56.58.313.913.917.26.019.915.628.76.320.314.91.80.19.07.75.119.623.419.946.121.828.424.057.024.45.56.91.49.44.25.32.14.19.112.414.116.712.614.627.917.0
HI32.412.449.818.520.15.36.84.650.414.36.224.120.66.518.820.816.74.412.74.212.42.916.85.116.111.315.88.821.110.832.717.024.47.00.40.113.47.238.67.636.512.456.37.141.97.553.710.47.03.70.511.523.610.15.51.412.08.64.00.728.519.510.97.2
MG52.68.250.314.420.05.112.64.451.818.012.615.337.93.413.07.112.54.116.31.114.73.610.81.025.410.416.71.627.54.221.52.624.18.40.10.110.35.538.49.045.929.170.624.542.36.945.311.26.61.76.33.56.93.01.41.025.86.714.04.723.15.011.66.8
MP42.912.839.121.610.112.210.69.545.814.45.515.621.211.013.718.88.19.68.86.58.39.211.16.819.321.910.47.925.116.513.711.114.217.92.00.86.111.837.715.625.036.946.138.930.319.141.914.75.42.26.25.99.710.82.55.121.010.64.02.927.911.86.49.0
Ssp29.410.626.129.59.814.013.920.440.317.94.519.516.511.210.529.18.616.13.94.09.825.37.98.413.826.66.67.920.038.610.515.617.012.01.31.111.57.234.121.325.215.129.412.332.217.944.715.56.23.80.615.510.212.45.213.615.010.34.44.719.923.012.717.9
EC22.316.613.913.711.011.13.952.630.325.14.427.918.315.310.926.48.58.67.28.97.05.58.423.29.023.47.114.415.325.520.133.616.212.22.00.212.99.715.328.817.721.733.610.332.119.139.417.85.26.50.915.220.922.03.65.48.816.12.11.224.729.68.011.1
HP42.611.543.729.816.59.78.14.435.527.09.422.315.47.75.827.216.05.66.23.916.08.74.93.313.313.87.09.826.813.87.520.125.611.20.20.114.66.631.65.533.325.368.920.534.712.950.218.23.87.30.17.14.98.52.51.19.727.09.48.59.620.26.321.5
BS30.814.219.215.423.210.95.023.337.227.09.527.119.317.413.417.712.98.014.96.410.53.37.016.08.78.622.314.519.015.921.720.222.712.10.00.015.37.419.618.722.317.249.421.133.118.749.223.23.64.40.010.37.58.54.16.56.714.210.83.912.723.421.711.2
BH26.218.717.824.114.18.38.111.219.414.713.119.815.67.67.910.112.112.721.319.79.07.710.99.010.59.714.813.215.07.612.29.615.212.318.712.917.89.216.813.320.518.635.527.317.710.120.49.619.719.333.921.514.59.722.515.513.022.726.221.210.811.820.210.2
BB53.16.642.217.228.52.410.92.955.48.039.118.127.32.514.85.623.43.416.62.59.93.78.81.316.35.518.02.319.84.717.72.634.19.81.40.59.23.421.44.260.514.886.022.941.210.251.317.45.32.80.64.82.11.11.80.616.610.720.56.212.67.619.67.7
AE28.822.517.58.126.831.07.714.517.39.846.018.730.28.425.415.48.812.87.13.510.817.25.67.09.711.48.712.315.912.516.713.77.533.81.60.42.612.97.313.110.725.244.948.916.127.062.533.53.94.01.29.31.51.20.60.87.87.819.126.015.68.133.610.0
MT6.122.01.717.05.616.64.946.86.431.92.217.58.530.84.737.62.811.74.720.64.517.17.532.44.333.75.316.612.257.113.546.95.813.80.20.37.016.28.721.55.319.25.214.315.739.615.328.43.28.81.616.39.730.19.926.93.915.02.24.519.550.610.619.6
MTC6.322.81.718.05.717.24.949.36.533.22.318.58.232.34.839.92.411.63.919.73.817.16.632.03.934.64.815.811.358.913.148.66.114.40.00.06.716.18.522.85.319.55.315.015.941.616.130.12.57.10.114.98.828.87.825.43.714.61.53.518.850.010.119.3
ML8.820.94.923.78.514.78.540.011.632.04.719.714.329.69.638.35.011.36.218.06.812.99.024.810.329.27.613.721.241.817.836.28.014.40.70.98.114.110.622.17.918.69.017.721.437.421.429.33.36.11.413.812.622.48.819.86.112.92.13.523.334.211.514.9
TP30.913.68.720.023.521.15.822.622.517.39.019.718.812.415.836.415.910.78.110.713.19.56.612.99.714.610.518.216.315.730.638.514.615.60.10.111.715.911.926.512.911.918.221.626.218.928.131.310.39.10.19.921.223.95.712.510.710.35.16.119.114.816.119.6
CT30.617.632.319.822.812.214.910.034.819.911.220.124.110.316.912.933.612.29.56.824.15.79.64.116.99.016.98.235.810.219.59.420.79.91.60.916.36.727.114.624.210.740.117.434.610.442.023.710.26.10.59.613.07.79.54.310.48.411.32.612.38.627.514.8
RP41.67.054.48.620.33.111.62.851.811.245.521.420.93.625.36.018.82.616.73.415.80.810.74.025.44.518.33.826.53.326.34.233.65.22.00.616.03.024.56.856.49.967.915.743.05.244.313.28.42.50.57.19.51.92.90.819.06.815.23.427.16.614.85.5
CJ55.64.549.715.831.82.76.91.143.616.526.422.023.02.517.29.816.22.010.01.615.51.38.71.118.86.212.82.533.76.522.15.331.75.02.40.613.23.228.32.953.88.981.513.148.04.257.012.78.63.71.06.66.33.80.90.122.512.116.02.720.68.520.95.8
CP31.016.331.015.825.915.915.88.834.720.813.718.820.412.916.511.630.611.011.76.323.49.38.83.217.510.317.27.630.511.319.68.222.79.81.60.916.27.626.413.925.212.740.520.933.111.942.423.610.25.70.410.113.56.96.73.111.78.710.84.513.89.526.612.3
TM18.933.03.512.623.933.02.724.813.929.827.823.026.916.29.733.612.512.27.58.19.910.49.79.97.512.413.012.714.114.314.415.49.825.90.10.15.310.65.015.310.925.242.533.628.021.556.232.74.23.00.311.13.02.33.21.98.09.029.515.919.48.232.39.0
DR10.720.60.97.65.433.51.566.610.021.60.917.44.023.12.447.42.67.82.211.95.727.03.625.14.034.42.517.69.558.66.946.83.918.80.00.03.617.47.433.63.820.28.119.25.744.324.931.71.46.00.414.27.140.33.020.94.823.81.42.77.657.35.920.8
NM20.820.47.829.910.113.62.234.422.130.36.024.016.222.710.317.56.213.84.99.87.414.13.018.16.226.27.213.69.441.520.428.814.215.50.50.29.013.123.117.215.525.746.111.022.229.448.012.13.37.90.712.011.227.93.27.15.016.53.14.016.343.88.87.6
XF15.811.08.818.112.88.38.014.713.411.77.515.119.89.78.814.912.114.921.619.713.313.220.421.211.713.216.817.818.016.623.724.610.912.510.47.716.820.819.615.610.913.412.813.716.811.110.76.720.234.331.031.312.920.320.119.39.915.713.814.717.020.318.313.6
VC26.713.919.923.712.814.98.828.730.925.04.326.316.014.411.029.111.36.010.89.411.16.012.310.813.020.27.911.220.021.618.930.615.713.80.10.113.110.933.418.119.619.535.813.736.313.637.723.76.14.80.313.419.717.65.32.911.914.33.01.225.824.17.88.8
PAE1.733.70.38.73.127.81.482.92.937.80.920.22.728.84.033.40.812.10.613.02.113.02.233.31.732.80.86.34.867.74.838.85.320.00.30.36.315.46.236.23.722.63.625.010.542.623.437.31.09.02.414.87.949.22.414.12.625.90.52.08.361.94.29.9
B45.74.563.110.412.01.99.32.362.39.642.321.421.73.419.44.130.63.218.02.614.12.311.32.420.43.019.32.519.32.919.13.131.05.02.90.918.22.827.64.460.810.089.88.437.55.249.55.210.02.30.69.112.51.96.10.814.93.515.71.522.44.323.83.6
LMO30.714.437.312.621.45.713.05.250.518.49.326.726.69.121.313.512.76.410.36.27.91.717.87.215.86.925.312.923.38.728.017.123.610.82.30.412.55.229.35.231.714.460.810.640.114.261.013.24.12.00.69.312.47.25.83.013.88.46.81.323.814.419.38.9
LIN31.613.539.111.021.45.212.94.750.517.210.226.427.48.621.911.812.95.611.45.98.21.617.56.717.36.425.311.524.48.228.315.624.110.52.30.412.45.129.15.232.214.962.710.740.114.462.012.94.01.90.69.412.17.25.92.913.88.47.41.423.414.419.38.5
STY23.015.113.512.811.910.45.252.428.924.15.627.315.618.011.425.07.510.06.59.77.46.96.024.57.122.96.018.913.128.613.342.117.111.52.20.513.39.512.930.417.819.831.411.431.519.934.520.25.16.81.515.618.823.34.07.27.417.42.62.017.435.09.012.1
YP22.515.721.824.39.49.07.936.731.023.47.626.319.115.611.122.99.87.310.77.010.17.612.513.510.521.79.512.019.627.121.024.019.910.01.80.414.28.723.924.724.016.432.011.736.814.234.520.25.74.80.913.620.316.74.07.912.914.43.02.026.523.76.115.8
SAMU5032.612.053.613.610.82.18.62.452.214.818.625.827.37.522.69.512.91.720.53.910.81.016.24.016.82.828.79.520.14.529.89.330.68.62.50.518.54.636.45.143.113.561.114.345.412.754.310.65.11.30.47.513.43.24.90.516.95.211.61.532.39.214.14.3
SAN31532.711.954.013.510.82.18.62.352.514.818.525.827.47.522.89.512.91.720.63.910.81.016.44.016.82.728.89.520.14.530.19.430.58.42.50.518.74.536.55.143.113.361.014.145.612.554.210.55.01.30.47.413.43.24.90.516.95.211.51.532.69.214.24.3
SPY34.69.432.522.021.47.511.56.647.119.17.625.229.112.711.913.315.94.615.83.313.33.014.32.818.513.119.77.235.814.221.06.924.212.42.10.713.66.831.111.829.414.151.918.340.217.446.317.44.41.90.58.416.06.54.82.214.18.07.32.726.111.917.88.5
MM7.331.20.69.810.826.81.748.57.343.82.724.37.237.72.326.82.112.03.122.34.212.54.329.42.826.84.418.98.960.411.043.111.610.50.50.810.79.86.024.99.817.38.028.919.537.222.930.61.27.32.013.66.736.93.614.22.314.61.95.59.761.26.39.3
SM6.232.50.36.413.639.51.137.97.144.62.924.88.239.53.222.82.015.11.820.23.612.82.030.52.023.42.923.08.353.813.446.011.810.80.50.69.710.44.224.79.217.76.729.419.536.626.035.81.17.02.112.37.536.83.216.11.914.42.05.110.355.88.311.1
AGRT11.129.60.98.216.826.01.444.112.542.22.726.613.030.42.926.53.318.13.317.64.912.83.226.92.625.94.820.010.752.613.737.714.38.50.80.411.38.74.925.812.816.911.729.427.428.034.424.91.76.62.111.911.633.62.512.02.214.12.13.617.351.95.87.5


Each value Kij represents 1000 multiplied by the number of codon j divided by the total number of codons in organism i.

Organisms have been classified according to the three major domains of life. Species names and Abbreviations are in: genomeslist

See corresponding distribution obtained by Correspondence Analysis or tree classification.

Go to top menu


Fredj Tekaia