Proportions of ancestral duplication and conservation in completely sequenced genomes

orgSCSPCEDMAGCALBIATHHSMUSFRPFECUNMJMTHAFPHPAAPEMTATVHSSP2PFUSTOPYAEMAMKMMAHIMGMPSspECHPBSBHBBAEMTMTCMLTPCTRPCJCPTMDRNMXFVCPAEBLMOLINSTYYPSAMU50SAN315SPYMMSMAGRT
SC40.563.917.527.122.365.923.422.927.318.022.535.816.316.915.215.019.013.422.521.215.915.815.413.711.610.514.811.819.624.417.714.614.914.115.714.48.820.312.311.519.814.419.220.816.217.318.213.217.012.614.013.834.416.915.812.914.115.716.415.911.012.213.2
SP58.437.418.829.326.354.325.025.029.620.024.638.415.516.415.014.718.915.322.120.616.416.016.414.512.311.314.812.319.624.017.315.315.615.015.815.39.321.213.512.620.713.819.322.117.216.718.413.917.913.313.914.735.518.117.114.015.017.017.817.712.714.314.8
CE38.146.665.251.950.635.527.544.654.442.424.834.814.515.416.615.218.515.422.321.016.515.916.214.412.211.013.312.217.221.715.813.615.012.714.714.27.718.115.514.319.113.017.620.514.816.416.713.714.811.312.814.525.016.314.813.314.115.015.716.713.615.114.9
DM40.550.239.265.869.937.529.550.362.747.926.536.314.516.016.715.519.515.722.321.216.115.316.514.112.110.513.911.917.621.115.714.114.913.215.014.18.519.414.413.518.214.018.922.515.517.216.813.615.211.612.914.526.316.415.213.114.115.115.816.913.715.315.2
AG40.950.239.873.159.538.030.650.260.348.726.536.016.718.518.918.923.517.924.823.419.117.720.016.114.413.814.814.828.126.720.720.627.219.522.822.511.126.918.316.823.120.025.531.323.422.926.719.322.618.026.126.338.824.122.324.325.621.822.824.221.725.126.3
CALBI71.865.518.427.725.735.824.323.227.818.522.335.715.616.814.114.218.614.021.720.215.315.316.314.011.110.914.812.419.124.216.814.715.413.815.814.78.520.213.712.720.012.618.921.716.616.217.613.517.312.914.014.433.217.416.113.714.916.517.317.312.514.014.4
ATH40.347.821.731.530.337.083.625.629.721.926.233.418.919.318.917.622.616.225.824.220.118.818.516.913.612.916.714.426.729.421.126.520.721.021.220.212.329.019.718.428.720.130.233.523.326.324.519.524.218.218.920.044.922.620.918.119.121.022.121.117.318.819.3
HS43.053.340.061.354.539.732.166.790.868.828.237.715.016.417.116.320.216.823.822.517.616.717.315.612.611.714.013.218.924.017.315.416.014.016.216.09.020.616.315.220.615.921.224.016.218.918.115.616.512.514.316.129.418.116.814.515.416.417.118.915.516.716.4
MUS41.752.539.562.154.739.131.576.877.867.727.637.214.415.916.715.419.516.322.921.717.016.216.314.712.111.613.612.918.623.417.115.116.113.515.915.58.719.915.714.720.115.720.423.915.518.218.015.216.312.513.916.128.917.516.114.315.215.916.718.514.916.416.0
FR42.052.640.060.759.939.532.768.781.863.427.637.414.215.916.716.220.115.622.922.017.416.316.715.112.111.613.313.019.223.418.515.316.613.816.115.88.719.816.315.220.315.419.824.515.818.418.515.516.412.814.316.228.717.916.514.815.316.116.918.315.316.416.3
PF25.931.213.119.315.922.216.317.221.013.228.328.911.110.89.811.113.110.015.013.89.89.611.09.57.96.410.87.612.619.613.39.17.410.19.8.77.914.56.96.411.811.317.219.211.215.011.37.210.67.88.16.825.610.59.97.18.010.110.511.65.96.57.0
ECUN19.523.48.913.110.816.211.412.015.29.013.626.19.29.08.29.110.78.811.210.78.67.48.56.96.95.88.56.67.014.010.64.84.35.55.04.95.27.43.63.46.48.09.910.65.79.06.14.35.64.44.83.913.27.06.64.24.96.26.58.93.33.74.2
MJ11.513.34.96.76.010.26.04.85.63.78.715.433.157.245.344.354.830.644.244.032.532.846.231.027.434.553.939.822.224.017.619.218.120.219.318.313.434.112.111.417.516.619.022.725.016.432.115.318.112.416.015.332.720.619.516.115.920.722.219.013.815.716.7
MTH13.616.24.67.47.611.28.05.16.14.08.315.259.644.052.642.953.833.449.547.337.132.843.731.228.638.754.747.425.028.021.424.020.421.423.423.513.135.517.116.124.520.520.326.226.619.035.419.920.715.618.919.633.724.623.520.19.423.725.022.517.819.620.7
AF14.416.55.98.28.711.88.75.66.64.58.615.453.860.651.049.660.841.557.854.543.342.951.839.335.440.547.447.827.729.220.524.825.123.128.127.714.238.920.519.325.418.721.828.829.320.540.323.320.115.923.225.634.326.224.823.322.525.226.425.123.226.428.1
PH16.318.75.07.19.211.19.75.26.04.17.915.352.149.350.542.989.041.856.753.539.443.973.742.035.628.543.537.929.733.427.023.025.626.930.629.820.639.416.315.322.122.524.631.829.924.446.721.321.716.523.221.834.629.628.122.922.728.830.328.522.025.327.0
PA14.315.25.47.57.311.97.45.56.44.38.315.951.246.848.374.342.040.351.948.137.939.275.635.932.630.142.134.626.628.023.022.724.222.326.825.116.536.114.713.920.220.323.127.525.020.642.919.219.014.019.119.031.123.422.219.019.223.725.223.219.022.223.3
APEM15.520.14.87.310.610.39.45.25.93.97.214.938.539.945.944.655.026.756.051.638.045.046.945.544.622.240.433.726.031.526.922.025.322.327.128.314.334.723.321.826.719.125.727.628.323.637.225.221.115.821.223.731.829.127.623.825.828.329.328.225.729.129.8
TA15.217.55.98.38.312.78.25.36.34.28.614.837.237.239.738.648.335.237.085.035.244.039.940.530.824.331.230.924.229.222.919.822.822.425.625.512.133.419.018.023.617.120.827.223.919.934.920.219.114.017.620.132.725.824.520.221.824.625.922.820.623.324.3
TV15.417.86.28.38.713.38.35.66.84.48.715.037.237.841.239.747.235.589.036.735.144.739.940.430.624.631.630.523.929.622.320.122.222.625.525.314.234.318.817.723.717.320.828.724.219.435.220.119.114.517.719.832.526.124.320.021.125.026.523.020.122.223.4
H14.817.75.88.39.812.010.25.56.64.58.013.938.744.245.639.749.736.953.450.736.235.840.933.129.428.536.639.229.030.124.428.226.723.029.531.415.134.524.623.330.422.325.529.326.222.136.228.223.518.325.727.435.728.627.224.526.128.229.326.826.129.030.4
SSP216.719.47.19.19.414.29.56.27.44.99.515.943.340.447.345.056.648.166.263.836.857.847.579.043.326.537.333.825.730.123.022.125.123.127.928.315.538.222.421.226.417.021.929.626.919.338.622.620.916.119.122.134.828.026.422.323.427.228.525.223.025.826.1
PFU17.022.86.59.311.113.312.37.08.05.69.117.153.949.149.673.490.844.658.955.039.945.842.345.638.530.447.641.229.831.523.523.125.224.728.328.316.840.218.817.524.720.924.529.432.121.846.622.522.816.221.021.137.931.729.623.924.030.732.430.523.127.128.3
STO18.623.16.88.611.413.711.15.97.14.59.115.746.943.049.048.359.250.068.465.237.784.451.651.646.926.640.238.028.933.426.024.326.726.430.830.419.842.623.822.428.417.323.732.731.622.941.023.722.516.621.123.637.931.329.624.325.331.132.828.724.627.228.2
PYAE15.619.55.38.29.911.89.55.86.94.58.115.041.641.345.844.055.251.857.853.935.348.748.449.239.323.439.733.826.627.322.022.324.821.626.226.113.737.321.420.126.818.122.127.528.020.238.222.921.115.519.823.233.425.824.922.423.025.426.525.423.726.627.5
MA16.018.97.110.812.514.79.77.48.76.49.817.055.160.953.845.656.034.652.650.343.135.748.133.929.658.951.387.328.429.021.729.926.324.128.529.113.838.021.720.230.321.623.527.530.721.540.023.923.118.024.325.934.629.627.724.126.128.329.924.924.526.928.5
MK13.014.64.06.26.110.76.94.65.43.57.314.157.157.743.940.950.835.442.640.634.331.643.331.630.431.434.937.522.725.519.219.718.918.518.819.410.934.412.612.920.817.520.523.523.618.232.517.019.114.216.717.232.921.620.617.418.120.021.121.016.318.319.1
MMA14.817.46.49.29.513.58.16.67.95.39.715.854.760.953.044.354.634.052.048.342.536.246.733.830.175.350.955.427.428.622.328.625.224.827.827.314.337.121.918.928.421.423.528.629.821.038.923.022.217.623.224.634.328.426.823.627.127.328.624.623.226.527.6
HI13.014.34.87.38.511.18.74.45.44.08.28.722.422.021.520.026.717.928.425.620.720.522.518.415.217.717.319.929.551.439.331.648.140.835.936.624.844.225.723.840.140.250.155.648.443.343.528.748.933.545.039.082.339.537.044.847.838.840.643.231.136.138.2
MG8.88.13.54.94.66.36.23.54.33.06.47.69.58.58.59.612.08.414.012.39.19.410.18.36.87.06.18.219.122.383.012.112.016.514.514.918.919.38.48.016.122.425.828.317.722.122.011.014.210.011.68.835.519.518.010.512.717.918.824.59.811.212.5
MP8.68.13.35.04.66.16.03.84.53.26.07.38.912.611.29.812.18.713.511.18.99.39.88.16.76.96.28.319.498.345.614.612.218.115.015.217.918.08.98.516.722.825.427.117.122.021.611.414.610.411.98.835.119.818.311.113.018.419.224.510.011.712.5
Ssp17.720.97.912.112.915.317.39.210.37.910.211.528.137.634.324.332.022.436.633.428.226.526.922.719.525.723.330.247.752.844.247.240.438.739.640.925.155.333.631.246.841.649.854.544.741.050.137.840.832.039.841.267.142.239.436.238.438.740.739.935.840.843.8
EC17.319.66.710.212.416.211.66.17.55.59.39.828.536.735.828.536.024.340.537.630.930.230.226.622.525.423.329.579.753.940.942.550.047.249.743.627.858.229.633.549.147.054.564.456.646.456.041.956.142.462.760.497.655.451.877.971.848.751.151.646.053.254.9
HP11.412.43.95.86.69.47.23.64.43.37.48.220.425.720.119.324.415.927.924.818.819.319.117.213.714.814.718.541.448.237.526.328.329.928.928.626.146.318.917.730.837.442.452.262.837.537.623.933.824.529.326.063.530.528.527.630.330.131.531.821.724.627.5
BS17.619.59.212.112.217.015.08.19.77.210.412.125.732.732.526.734.223.439.637.730.527.928.625.420.225.719.427.153.263.946.839.147.641.648.468.730.855.835.633.348.847.252.555.050.745.757.343.042.431.143.544.872.968.265.642.844.063.265.460.439.744.648.1
BH21.023.48.511.514.416.117.98.29.97.510.411.631.835.437.034.843.029.647.944.836.838.135.633.225.928.126.436.158.770.651.446.846.547.172.953.133.861.635.738.053.451.656.860.254.749.865.147.946.334.249.949.976.970.266.647.252.464.767.163.444.951.954.2
BB7.48.23.44.34.36.74.82.83.42.38.37.611.210.812.112.314.29.615.213.511.410.811.99.37.111.57.411.626.648.434.718.517.925.620.220.647.029.410.19.620.047.734.338.627.728.731.615.919.414.720.715.448.325.423.916.118.622.823.826.913.915.918.0
AE15.317.46.58.69.412.412.06.27.25.79.610.632.038.739.930.136.823.638.936.624.229.531.326.922.823.226.127.844.052.637.835.534.244.435.835.028.836.226.024.439.541.748.055.849.743.652.529.436.428.334.132.772.736.635.031.633.835.437.235.327.430.732.6
MT16.017.98.311.210.915.613.47.58.86.98.510.520.025.925.021.226.922.834.631.926.125.424.322.418.523.019.323.942.847.835.037.928.832.137.331.720.445.046.189.989.335.442.048.937.536.241.435.736.129.132.137.760.739.036.333.136.736.537.937.935.538.539.3
MTC15.919.08.311.210.815.614.37.68.96.98.510.522.227.427.022.629.024.236.534.128.127.325.624.518.222.819.223.844.849.936.839.338.633.439.639.221.647.196.644.789.037.143.450.939.138.843.438.138.230.634.540.363.383.177.235.138.538.339.939.737.441.041.7
ML15.117.26.38.49.812.412.56.07.05.17.79.420.324.723.119.024.820.131.528.624.522.221.219.717.619.218.420.440.652.237.733.232.131.134.133.621.441.954.450.832.835.442.347.435.336.239.532.233.527.230.432.361.635.233.328.031.333.034.535.131.132.635.3
TP9.610.53.15.26.66.26.43.64.23.06.17.413.015.914.214.417.111.318.016.313.411.113.09.39.28.810.612.330.447.834.321.019.927.322.323.734.030.313.913.224.325.838.838.529.334.234.018.723.117.623.718.249.726.225.018.521.523.524.629.916.819.320.7
CT14.615.83.65.48.97.412.13.64.53.46.58.318.222.821.521.822.814.327.122.815.920.017.215.912.19.513.315.439.150.138.826.426.834.132.028.226.837.417.416.529.940.529.051.033.579.436.021.128.121.725.621.856.729.328.122.726.428.930.032.419.320.923.5
RP13.113.64.05.27.48.27.93.23.82.97.37.921.620.420.419.123.613.027.726.514.519.418.018.212.210.712.016.936.150.136.225.825.333.928.025.927.037.617.916.828.433.745.029.037.438.634.320.129.824.026.023.659.027.626.523.525.129.130.530.220.722.625.2
CJ11.313.34.86.57.610.28.33.84.83.47.77.323.023.223.121.327.918.329.627.319.321.424.620.016.218.118.121.947.250.336.929.933.962.033.332.427.652.721.520.234.239.045.455.230.540.243.526.938.526.434.130.967.835.433.431.534.934.636.335.325.229.433.0
CP15.816.74.15.89.57.612.54.25.03.97.08.419.017.918.119.822.814.227.124.615.919.217.116.812.19.813.515.736.950.938.025.825.433.029.328.327.339.617.917.029.438.893.052.034.932.736.521.828.721.926.522.757.030.829.622.925.629.330.533.719.721.024.1
TM14.015.84.97.38.611.39.14.75.64.08.09.431.533.130.934.243.023.839.036.026.428.536.525.522.224.826.128.743.756.441.234.835.138.439.041.230.156.223.221.737.344.446.250.244.640.441.332.233.826.135.031.067.743.741.631.936.538.039.942.630.234.938.1
DR15.520.27.510.813.113.815.67.69.06.89.010.421.826.627.723.530.928.241.938.834.731.430.227.223.722.824.729.646.352.037.839.539.836.043.347.323.749.140.037.452.440.346.949.147.139.948.936.338.333.643.546.666.648.946.441.144.445.547.746.842.146.849.4
NM17.219.24.97.111.111.911.84.65.54.18.28.729.931.629.126.834.422.138.536.026.828.227.024.221.416.623.728.165.155.742.840.247.147.642.241.629.055.830.929.046.144.153.565.754.746.647.235.238.139.945.546.983.544.541.642.946.142.644.244.936.640.843.0
XF14.717.75.37.910.212.110.95.36.24.78.18.923.426.224.522.529.320.233.830.724.223.423.220.617.817.120.424.354.549.738.438.343.642.236.836.125.352.230.628.645.141.749.965.645.343.045.633.549.635.043.143.781.237.636.341.542.836.237.838.335.338.041.1
VC17.920.46.210.314.714.412.86.07.45.79.59.930.032.631.928.436.123.439.136.430.928.430.325.422.322.624.530.776.957.643.943.265.049.149.649.631.859.734.832.347.649.956.866.457.848.756.441.156.142.244.758.292.52.949.960.064.548.550.750.543.650.453.5
PAE21.024.09.312.916.118.118.49.010.58.29.711.830.435.435.932.540.529.045.141.634.532.832.629.626.826.526.734.171.656.641.550.166.449.452.651.931.363.945.342.154.850.557.470.559.750.258.548.560.648.363.356.792.753.149.961.264.249.451.749.456.061.564.1
B8.912.43.14.35.87.76.62.73.42.27.47.321.716.416.217.221.412.224.923.612.917.816.816.211.19.314.313.836.549.336.319.723.830.523.422.526.236.514.413.526.131.239.048.533.834.532.616.728.220.721.917.726.126.825.121.725.425.226.527.714.716.718.2
LMO18.621.67.810.313.114.915.67.38.56.59.911.328.530.629.229.337.025.242.138.830.129.732.127.320.823.623.130.551.369.550.840.146.341.359.556.733.754.933.931.447.549.151.156.050.145.058.739.739.930.643.241.972.51.890.643.444.064.066.167.438.442.346.6
LIN18.521.77.810.113.014.715.27.18.46.49.711.329.230.828.929.437.524.642.337.930.429.832.217.720.823.723.131.151.568.349.939.645.941.360.756.234.054.333.331.147.349.051.056.050.144.958.939.539.731.243.041.771.894.652.043.543.264.266.367.638.742.046.2
STY18.922.38.011.014.216.415.06.98.26.29.610.231.033.032.730.237.626.342.539.632.331.733.329.424.424.926.333.079.356.643.444.683.849.750.749.229.260.637.234.750.248.756.165.659.847.857.242.955.645.163.360.697.757.754.750.275.350.152.653.347.153.156.4
YP17.120.66.39.512.515.212.35.66.95.19.29.527.529.730.328.335.825.339.937.030.328.830.827.223.423.524.429.778.755.542.743.573.948.148.748.128.958.536.633.549.048.055.265.259.147.855.941.155.642.961.959.597.254.451.268.849.548.651.051.346.652.355.0
SAMU5019.222.88.210.413.015.114.67.28.36.310.311.529.630.029.729.137.124.642.640.229.430.733.229.521.821.923.529.852.869.953.338.645.241.957.255.830.753.633.731.445.143.550.557.848.844.753.838.740.730.441.140.070.167.864.141.043.549.499.465.637.040.244.0
SAN31519.322.98.210.413.115.114.67.28.36.310.311.529.830.029.829.237.124.742.640.329.430.633.329.721.821.823.629.752.969.953.538.745.041.956.955.430.453.633.431.044.743.550.357.848.944.653.838.740.630.041.140.069.967.263.640.842.996.249.765.037.039.944.1
SPY15.217.96.79.210.911.512.86.87.76.08.610.720.321.620.721.427.618.631.428.820.823.624.420.816.215.716.422.243.866.049.929.435.732.742.542.127.338.124.522.735.539.345.747.937.838.344.229.232.424.032.329.559.055.252.433.433.851.052.738.027.418.933.9
MM18.221.78.713.115.217.415.88.710.17.79.210.925.130.630.626.834.227.641.137.031.628.928.727.222.828.322.931.157.150.738.146.753.442.947.147.526.957.044.240.651.746.251.071.951.545.052.844.049.040.749.658.877.049.647.348.954.143.845.944.656.76.576.2
SM16.119.57.410.913.015.512.66.88.36.08.99.925.931.031.727.635.127.139.936.631.929.130.327.323.028.223.132.758.750.738.146.155.244.247.748.427.556.041.638.649.945.451.572.353.544.454.143.650.839.850.058.776.349.446.948.753.544.146.445.468.758.140.3
AGRT15.819.17.110.212.215.412.36.27.65.58.49.623.828.929.525.932.725.738.235.330.227.228.725.721.526.021.629.356.750.136.544.253.143.146.646.826.953.839.336.449.844.651.069.852.043.452.242.749.439.149.458.175.848.645.847.953.343.545.544.164.573.753.9
SPECSO38.243.530.945.151.835.941.952.662.944.723.829.829.932.830.028.836.326.038.036.232.028.731.126.522.328.125.129.563.656.241.242.758.442.745.445.625.452.142.634.153.441.560.363.747.851.547.836.048.938.348.049.799.849.546.155.656.246.948.751.442.047.449.1


This table shows the proportions (in % of total) of the predicted ORF products of a given genome showing highly significant matches when used as query sequences against predicted ORF products of the same or one other genome (see reference to Methods below).

In this table, Tij is the proportion of ORF products from organism j (column) having a common ancestry with one or several ORF product(s) of organism i (line). Tij is called the "weight" of common ancestry between j and i.

For example: 40.5% of the S. cerevisiae (column with code SC) predicted ORF products are not unique i.e are duplicated and 58.4% are conserved in S. pombe (line with code SP),etc...

Methods are detailed in Tekaia and Dujon (1999). Jourmal of Mol. Evol. 49(5):591-600. and in Tekaia, Lazcano and Dujon (1999). Genome Research Vol. 9 p. 550-557.

Organisms have been classified according to the three major domains of life. Species names and Abbreviations are in: genomeslist

Data have been downloadded from the servers indicated in the list of this link:Genome Analysis.

See corresponding distribution obtained by correspondence analysis and the obtained genomic tree.

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Fredj Tekaia