Query proteome org ORFs- PARTs- SC CE SP* MJ MTH AF PH HI MG MP Ssp EC HP BS BB AE MT TP CT RP CJ SC 6182 4437 100. 12.87 57.47 18.72 19.15 15.81 14.12 18.80 24.93 22.16 14.33 13.82 14.68 12.43 13.79 21.08 12.02 14.31 19.08 22.05 14.81 CE 19099 7558 33.49 100. 42.66 18.05 18.98 17.70 17.33 20.33 27.42 24.52 15.58 14.75 16.47 13.21 18.67 21.60 13.13 16.19 21.30 25.26 15.11 SP* 3579 2248 46.20 17.50 100. 21.86 22.65 19.95 19.59 23.16 31.02 28.30 18.93 16.98 21.12 16.09 25.14 27.39 14.59 19.48 24.37 28.02 19.50 MJ 1735 1180 8.83 3.83 11.96 100. 58.76 47.22 39.18 18.80 27.14 23.11 18.43 13.70 18.18 15.07 19.25 31.28 12.45 14.90 16.71 20.21 18.89 MTH 1871 1227 10.41 4.53 13.21 62.71 100. 47.43 37.29 21.71 26.03 23.11 20.17 16.01 19.90 18.18 20.40 32.92 16.57 18.77 19.77 22.66 21.08 AF 2408 1423 15.19 5.08 13.74 58.72 56.47 100. 42.31 23.52 23.54 21.46 20.02 18.35 21.37 20.05 20.68 36.04 17.17 17.48 21.30 25.42 21.54 PH 2061 1373 14.58 7.23 17.03 52.03 47.84 47.43 100. 26.79 27.97 28.77 20.42 19.65 25.61 25.18 27.44 37.59 18.03 21.71 23.39 27.56 22.90 HI 1713 1377 9.55 4.07 12.23 19.91 19.55 17.21 14.12 100. 54.57 48.58 28.67 39.50 40.04 26.62 42.24 42.78 24.64 38.61 48.88 53.29 41.42 MG 468 361 5.25 2.19 5.42 14.91 12.38 10.33 6.62 16.12 100. 86.55 12.03 8.61 17.21 13.33 29.31 16.85 9.27 21.00 23.67 25.72 14.81 MP 677 424 5.09 2.03 5.64 11.52 12.55 9.83 6.91 16.63 97.78 100. 12.88 9.58 17.78 13.44 29.02 18.06 9.44 21.71 23.81 26.18 13.98 Ssp 3168 2002 11.38 4.86 14.50 29.57 31.21 27.33 17.55 44.51 56.23 51.65 100. 32.55 39.47 30.00 41.09 51.33 32.50 38.96 48.60 52.67 38.54 EC 4292 2473 12.46 5.64 16.45 29.40 33.00 29.44 21.99 78.28 55.67 52.35 38.71 100. 47.71 36.61 47.12 55.05 35.07 44.71 53.89 62.78 50.71 HP 1577 1226 8.63 3.12 10.14 23.64 22.08 16.65 13.47 39.07 49.30 44.81 24.22 23.29 100. 23.20 38.93 44.16 18.93 34.97 41.64 50.38 56.61 BS 4100 2573 11.40 4.76 14.72 27.37 29.42 26.63 20.32 49.89 65.92 60.37 34.86 35.70 42.74 100. 49.42 53.93 32.41 45.65 52.36 52.52 43.15 BB 850 696 5.58 2.32 6.76 14.06 12.14 10.40 8.08 23.31 48.19 41.98 13.93 12.69 23.89 16.05 100. 26.27 10.90 46.36 32.86 35.22 21.76 AE 1522 1157 11.78 5.39 14.36 36.69 34.88 35.34 23.67 41.17 52.07 45.51 31.26 27.53 46.16 29.80 46.83 100. 24.81 39.90 47.49 54.36 44.06 MT 3924 2329 9.28 4.41 13.38 21.18 25.67 20.94 15.65 40.30 51.24 45.04 33.36 28.83 32.38 27.82 33.90 43.47 100. 33.92 40.25 46.70 32.65 TP 1031 852 7.43 3.05 8.14 12.54 13.77 11.31 10.56 26.79 47.36 42.21 17.83 17.38 27.32 19.27 56.89 28.08 16.31 100. 37.04 36.60 24.56 CT 877 718 14.04 5.98 13.43 21.94 22.16 19.88 18.86 37.18 52.35 46.22 25.22 23.73 34.66 28.87 43.24 36.30 20.22 39.08 100. 49.15 30.08 RP 837 653 10.75 5.22 11.78 18.89 18.41 15.67 14.34 33.18 47.64 44.81 21.57 20.09 33.52 22.81 41.81 34.31 17.00 32.27 44.28 100. 31.21 CJ 1731 1323 9.44 3.85 11.87 22.20 20.94 19.18 15.58 45.17 51.52 47.87 27.52 27.57 66.23 25.80 45.25 50.30 20.65 37.67 45.82 52.06 100.This table shows the proportions (in %) of the partitions of a given proteome showing highly significant matches when predicted ORF products of this organism were used as query sequences against predicted ORF products of the same or another organism.
Definition: A set of predicted ORF products is called a Partition if, and only if, the following properties are verified:
a) each member of the set has at least one highly significant match with one other member of the set;
b) no member of the set has highly significant matches with members not included in the set;
c) the set is minimal (i.e cannot be divided into subsets verifying a and b).
Note that each ORF product that has no significant match in its own organism verify these properties and therefore is considered as a partition with a single member.
In this table, Tij is the proportion of distinct partitions from organism j having a common ancestry with one or several ORF product(s) of organism i (ie.Tij equals the number of distinct partitions of j including members having significant matches in i divided by the total number of distinct partitions of j, and is expressed in percent). Tij is called the "weight" of common ancestry between j and i.
Proportions of ancestral duplication in each genome equals 100 (i.e. each gene is its unique match).
Organisms have been classified according to the three major domains of life and the following abbreviations have been used:
S. cerevisiae (SC), C. elegans (CE), S. pombe (SP), M. jannaschii (MJ), M. thermoautotrophicum (MTH), A. fulgidus (AF), P. horikoshii (PH), H. influenzae (HI), M. genitalium (MG), M. pneumoniae (MP), Synechocystis sp. (Ssp.), E. coli (EC), H. pylori (HP), B. subtilis (BS), B. burgdorfi (BB), M. tuberculosis (MT), A. aeolicus (AE), T. pallidum (TP), C. trachomatis (CT), R. prowazekii (RP), and C. jejuni (CJ).
-: Number of distinct ORFs and distinct partitions in the proteome (not used for correspondence analysis).
*: only 68% of the total proteome of S. pombe was considered in this study.
see corresponding distribution obtained by correspondence analysis or the corresponding genomic tree.