Distinct Conservation Profiles and Phylogenetic domain specific conservation in completely sequenced genomes

Distinct Conservation Profiles and Porportions of Exclusively conversed genes in one or in Combinations of Phylogenetic Domains

Org size dsProf Reduc spec E A B EA EB AB EAB
SC 5829 3154 45.9 9.67 40.33 0.06 0.44 5.90 14.30 0.15 29.09
SP 4962 3031 38.9 16.40 31.33 0.62 1.49 6.46 12.01 0.88 30.73
NCU 10082 3473 65.6 30.58 41.30 0.03 0.23 2.43 9.69 0.08 15.56
CA 6114 3422 44.0 9.91 40.87 0.37 0.86 5.78 12.79 0.39 28.96
MGR 11109 4463 59.8 25.11 38.70 0.27 0.56 3.20 11.61 0.21 20.28
FG 11640 5707 51.0 16.39 36.95 0.39 1.13 3.64 13.96 0.51 26.98
AN 9541 5021 47.4 9.22 41.41 0.15 0.39 3.93 15.37 0.18 29.27
ECUN 1996 766 61.6 48.34 16.68 2.25 1.90 7.36 4.30 1.75 17.38
CE 20844 4853 76.7 13.08 60.20 0.18 0.10 3.89 7.71 0.08 14.72
CBG 25111 6177 75.4 30.11 40.90 0.44 0.81 4.45 8.10 0.50 14.66
DM 17878 4391 75.4 23.25 46.33 0.20 0.19 3.12 9.37 0.10 17.09
AG 16112 5690 64.7 22.44 39.44 0.29 1.83 3.92 10.98 1.48 19.36
ATH 22671 7754 65.8 39.40 14.52 1.31 6.33 2.11 9.01 3.10 19.05
HS 27625 6225 77.5 15.37 60.45 0.01 0.11 3.47 8.11 0.01 12.26
MUS 28097 6824 75.7 4.82 67.12 0.01 0.02 4.10 9.07 0.00 14.42
RN 21205 7437 64.9 4.27 56.20 0.06 0.12 5.84 12.90 0.04 20.53
FR 33609 7083 78.9 25.57 52.94 0.06 0.26 2.21 7.54 0.07 11.14
PF 5334 1716 67.8 52.96 14.32 2.90 3.99 4.19 4.68 2.92 12.74
CI 15851 5874 62.9 26.14 36.50 0.66 1.35 4.18 9.85 0.90 20.17
AFUM 9925 5095 48.7 11.19 42.44 0.16 0.46 4.10 14.20 0.16 27.26
AORYZ 14063 6035 57.1 21.95 35.12 0.22 0.60 3.13 13.48 0.34 25.12
CMER 4772 2503 47.5 31.37 16.89 1.42 5.55 4.02 10.70 3.26 26.76
KLWA 5214 2831 45.7 7.99 45.35 0.13 0.32 6.32 11.89 0.17 27.63
AGOS 4718 2607 44.7 5.74 47.85 0.06 0.14 6.40 11.82 0.14 27.78
CAGL 5275 2908 44.9 8.26 42.04 0.15 0.18 6.52 13.32 0.11 29.38
KLLA 5334 2960 44.5 9.50 41.75 0.35 0.39 6.11 12.29 0.16 29.32
YALI 6454 3546 45.1 22.60 31.57 0.49 1.17 4.88 10.78 0.52 27.92
DEHA 6937 3775 45.6 15.26 36.49 0.44 0.93 5.62 12.09 0.56 28.52
CRNE 6273 3329 46.9 28.77 26.65 0.73 1.67 4.30 10.10 0.62 27.13
MJ 1773 1312 26.0 14.51 0. 19.70 2.82 2.31 0.11 37.15 23.32
MTH 1871 1472 21.3 8.76 0.05 13.62 5.29 1.81 0.10 44.30 26.02
AF 2409 1892 21.5 9.92 0.12 12.99 5.23 1.07 0.20 44.97 25.41
PH 2061 1460 29.2 10.62 0. 16.64 7.27 2.08 0.04 38.47 24.84
PA 1765 1436 18.6 1.69 0. 23.85 0.73 2.66 0.05 39.26 31.72
APEM 1865 1058 43.3 31.74 0. 18.28 1.71 2.57 0. 23.32 22.30
TA 1478 1204 18.5 5.34 0. 18.60 0.81 2.23 0.20 37.41 35.38
TV 1526 1225 19.7 7.79 0. 17.56 1.24 2.22 0. 37.74 33.42
H 2058 1275 38.0 28.66 0.04 14.09 5.58 2.13 1.21 23.22 24.82
SSP2 2977 1981 33.5 7.89 0. 25.66 1.44 1.57 0.20 37.62 25.52
PFU 2208 1533 30.6 12.77 0. 23.36 0.86 2.26 0.09 33.83 26.81
STO 2826 1759 37.8 14.57 0. 27.31 1.06 1.27 0.14 32.09 23.49
PYAE 2605 1352 48.1 35.93 0. 16.62 2.80 1.84 0.11 24.06 18.61
MA 4528 2449 45.9 16.25 0.04 26.12 1.87 1.32 0.39 33.92 19.96
MK 1687 1040 38.4 25.07 0. 21.28 2.78 3.02 0. 28.80 19.02
MMA 3371 2243 33.5 5.87 0. 29.19 1.45 1.30 0.05 39.98 22.10
MBUR 2676 1666 37.7 12.89 0. 27.16 1.75 1.30 0.22 34.52 22.04
MFR 1815 1117 38.5 21.98 0. 24.95 4.40 0.99 0.33 32.01 15.31
NEK 563 376 33.2 24.68 0. 18.82 4.97 4.61 0. 23.80 23.09
THKO 2306 1588 31.1 12.44 0. 26.88 0.91 2.21 0.04 32.95 24.54
HI 1713 1469 14.2 4.78 0. 0.75 26.67 0. 8.75 24.40 34.20
MG 479 379 20.9 0.62 0. 0. 35.90 0. 6.05 22.54 34.86
MP 677 459 32.2 6.20 0.14 0.44 38.99 0. 4.57 23.48 26.14
Ssp 3168 2240 29.3 7.69 0.09 1.05 28.56 0. 8.14 23.88 30.49
EC 4290 3394 20.9 3.40 0.02 0.37 32.96 0. 8.01 23.55 31.59
HP 1577 1141 27.6 14.45 0. 1.58 25.55 0. 5.32 27.07 25.87
BS 4100 3071 25.1 8.70 0.02 1.19 24.43 0.02 5.26 29.24 31.04
BH 4066 2830 30.4 14.24 0.02 0.71 23.75 0. 5.09 26.58 29.53
BB 1639 764 53.4 43.74 0. 2.44 16.35 0. 3.35 19.03 14.88
AE 1522 1321 13.2 7.95 0. 3.35 13.66 0.06 4.99 31.93 38.04
MT 3996 2404 39.8 0.47 0. 0. 49.37 0. 6.20 18.19 25.75
MTC 4203 2327 44.6 9.44 0. 0.04 44.15 0. 5.28 16.84 24.22
ML 1604 1079 32.7 7.98 0.06 0.12 34.47 0. 7.54 17.83 31.98
TP 1031 691 33.0 22.89 0.19 0.87 26.86 0. 7.08 18.71 23.18
CT 877 642 26.8 4.56 0.11 0.57 36.25 0. 8.66 18.70 31.01
RP 837 729 12.9 1.91 0. 0. 25.68 0. 10.63 24.73 37.03
CJ 1634 1281 21.6 10.77 0.06 0.55 25.45 0. 6.11 25.64 31.33
CP 1052 658 37.5 16.15 0. 0.85 32.41 0. 7.03 15.58 27.85
TM 1849 1488 19.5 11.62 0. 3.08 13.25 0.05 4.75 32.28 34.93
DR 3117 2000 35.8 27.84 0.19 1.53 18.83 0. 5.29 20.62 25.56
NM 2081 1365 34.4 23.45 0.04 0.48 24.50 0. 7.78 14.99 28.06
XF 2830 1533 45.8 35.68 0.03 0.63 23.81 0. 6.85 11.27 21.20
VC 3837 2635 31.3 13.29 0.02 0.18 31.11 0. 8.93 17.72 28.66
PAE 5570 4050 27.3 13.55 0.10 0.55 26.71 0.03 8.77 18.95 30.84
B 575 523 9.0 0. 0. 0. 22.60 0. 14.08 15.13 46.60
LMO 2846 2157 24.2 2.88 0.03 0.10 33.86 0. 6.18 25.52 31.36
LIN 2968 2141 27.9 5.18 0. 0.26 35.64 0. 5.12 24.59 29.14
STY 4395 3043 30.8 8.46 0.09 0.20 35.22 0.02 7.50 19.38 28.12
YP 3895 2744 29.6 9.52 0.10 0.28 31.39 0. 8.72 21.56 28.26
SAMU50 2714 1901 30.0 2.21 0. 0.07 37.32 0. 4.75 25.64 29.95
SAN315 2594 1859 28.3 0.42 0. 0.03 36.81 0. 4.93 26.63 31.14
SPY 1696 1231 27.4 14.38 0.05 1.06 26.00 0. 5.71 22.40 29.77
MM 7275 4580 37.0 17.47 0.10 0.50 27.45 0.02 6.35 20.74 27.03
SM 6205 4296 30.8 10.29 0.06 0.43 29.79 0. 6.28 22.99 29.91
AGRT 5299 3812 28.1 12.02 0.07 0.22 26.91 0.01 7.41 21.87 31.00
MB 3953 2392 39.5 0.65 0. 0. 48.82 0. 5.59 18.87 26.05
SCO 7810 4387 43.8 27.87 0.42 1.03 22.35 0.02 5.58 19.28 22.62
UU 614 444 27.7 12.21 0. 1.79 23.28 0. 4.88 24.42 27.03
SHFL 4068 2782 31.6 2.63 0. 0.09 34.66 0. 9.24 24.87 27.94
LL 2321 1587 31.6 17.01 0.04 0.94 23.52 0. 5.81 22.79 29.55
RCO 1374 827 39.8 26.63 0. 0.58 26.49 0. 6.62 16.44 23.21
CCR 3737 2513 32.8 19.29 0.21 0.64 26.41 0.05 8.69 16.10 27.99
NOS 5366 3214 40.1 19.79 0.11 1.13 24.58 0.03 6.70 20.81 26.46
TSE 2475 1685 31.9 9.17 0. 0.36 28.04 0. 9.37 21.33 31.67
TTE 2588 1863 28.0 16.80 0. 2.08 16.30 0. 4.55 29.63 30.56
BFL 583 536 8.1 0.51 0. 0. 21.95 0. 14.40 14.75 48.37
PRO 1882 1166 38.0 13.97 0. 0.26 30.71 0. 10.46 15.09 29.48
PMT 2265 1405 38.0 16.42 0.04 0.26 30.90 0. 10.02 14.92 27.37
PMM 1712 1167 31.8 8.23 0. 0.17 31.95 0. 9.92 15.94 33.76
WS 2044 1580 22.7 10.42 0. 0.78 23.77 0. 6.31 28.71 29.99
PL 4683 2861 38.9 15.58 0.21 1.02 34.25 0.06 6.53 18.00 23.98
VPR 4832 3295 31.8 13.90 0. 0.26 30.15 0. 7.63 19.59 28.35
VVYJ 5028 3281 34.7 16.20 0. 0.39 29.95 0. 7.12 19.17 27.12

Columns are:
org (see genomeslist),
size: is the species total number of genes,
dsProf: number of distinct conservation profiles (in terms of presence/absence of conservation in each of the considered species),
Reduc: 100*(1 - dsProf/size),
spc: proportion from total number (size) of species-specific genes (ie. genes that have no match outside their own genome),
E: proportion from total number (size) of genes exclusively conserved in eukaryotic species,
A: proportion of genes exclusively conserved in archaeal species,
B: proportion of genes exclusively conserved in bacterial species,
EA: proportion of genes exclusively conserved in eukaryal and in archaeal species,
EB: proportion of genes exclusievly conserved in eukaryal and in bacterial species,
AB: proportion of genes exclusievly conserved in archaeal and in bacterial species,
EAB: proportion of genes conserved in the three domains of life,

org: Organisms have been classified according to the three major domains of life. Species names and Abbreviations are in: genomeslist

Data have been downloadded from the servers indicated in the list of this link:Genome Analysis.

Comparison Method is outlined in ancestral duplication conservation table
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Fredj Tekaia

Org	size	dsProf	Reduc	spec	E	A	B	EA	EB	AB	EAB
SC	5829	3154	45.9	9.67	40.33	0.06	0.44	5.90	14.30	0.15	29.09
SP	4962	3031	38.9	16.40	31.33	0.62	1.49	6.46	12.01	0.88	30.73
NCU	10082	3473	65.6	30.58	41.30	0.03	0.23	2.43	9.69	0.08	15.56
CA	6114	3422	44.0	9.91	40.87	0.37	0.86	5.78	12.79	0.39	28.96
MGR	11109	4463	59.8	25.11	38.70	0.27	0.56	3.20	11.61	0.21	20.28
FG	11640	5707	51.0	16.39	36.95	0.39	1.13	3.64	13.96	0.51	26.98
AN	9541	5021	47.4	9.22	41.41	0.15	0.39	3.93	15.37	0.18	29.27
ECUN	1996	766	61.6	48.34	16.68	2.25	1.90	7.36	4.30	1.75	17.38
CE	20844	4853	76.7	13.08	60.20	0.18	0.10	3.89	7.71	0.08	14.72
CBG	25111	6177	75.4	30.11	40.90	0.44	0.81	4.45	8.10	0.50	14.66
DM	17878	4391	75.4	23.25	46.33	0.20	0.19	3.12	9.37	0.10	17.09
AG	16112	5690	64.7	22.44	39.44	0.29	1.83	3.92	10.98	1.48	19.36
ATH	22671	7754	65.8	39.40	14.52	1.31	6.33	2.11	9.01	3.10	19.05
HS	27625	6225	77.5	15.37	60.45	0.01	0.11	3.47	8.11	0.01	12.26
MUS	28097	6824	75.7	4.82	67.12	0.01	0.02	4.10	9.07	0.00	14.42
RN	21205	7437	64.9	4.27	56.20	0.06	0.12	5.84	12.90	0.04	20.53
FR	33609	7083	78.9	25.57	52.94	0.06	0.26	2.21	7.54	0.07	11.14
PF	5334	1716	67.8	52.96	14.32	2.90	3.99	4.19	4.68	2.92	12.74
CI	15851	5874	62.9	26.14	36.50	0.66	1.35	4.18	9.85	0.90	20.17
AFUM	9925	5095	48.7	11.19	42.44	0.16	0.46	4.10	14.20	0.16	27.26
AORYZ	14063	6035	57.1	21.95	35.12	0.22	0.60	3.13	13.48	0.34	25.12
CMER	4772	2503	47.5	31.37	16.89	1.42	5.55	4.02	10.70	3.26	26.76
KLWA	5214	2831	45.7	7.99	45.35	0.13	0.32	6.32	11.89	0.17	27.63
AGOS	4718	2607	44.7	5.74	47.85	0.06	0.14	6.40	11.82	0.14	27.78
CAGL	5275	2908	44.9	8.26	42.04	0.15	0.18	6.52	13.32	0.11	29.38
KLLA	5334	2960	44.5	9.50	41.75	0.35	0.39	6.11	12.29	0.16	29.32
YALI	6454	3546	45.1	22.60	31.57	0.49	1.17	4.88	10.78	0.52	27.92
DEHA	6937	3775	45.6	15.26	36.49	0.44	0.93	5.62	12.09	0.56	28.52
CRNE	6273	3329	46.9	28.77	26.65	0.73	1.67	4.30	10.10	0.62	27.13
MJ	1773	1312	26.0	14.51	0.	19.70	2.82	2.31	0.11	37.15	23.32
MTH	1871	1472	21.3	8.76	0.05	13.62	5.29	1.81	0.10	44.30	26.02
AF	2409	1892	21.5	9.92	0.12	12.99	5.23	1.07	0.20	44.97	25.41
PH	2061	1460	29.2	10.62	0.	16.64	7.27	2.08	0.04	38.47	24.84
PA	1765	1436	18.6	1.69	0.	23.85	0.73	2.66	0.05	39.26	31.72
APEM	1865	1058	43.3	31.74	0.	18.28	1.71	2.57	0.	23.32	22.30
TA	1478	1204	18.5	5.34	0.	18.60	0.81	2.23	0.20	37.41	35.38
TV	1526	1225	19.7	7.79	0.	17.56	1.24	2.22	0.	37.74	33.42
H	2058	1275	38.0	28.66	0.04	14.09	5.58	2.13	1.21	23.22	24.82
SSP2	2977	1981	33.5	7.89	0.	25.66	1.44	1.57	0.20	37.62	25.52
PFU	2208	1533	30.6	12.77	0.	23.36	0.86	2.26	0.09	33.83	26.81
STO	2826	1759	37.8	14.57	0.	27.31	1.06	1.27	0.14	32.09	23.49
PYAE	2605	1352	48.1	35.93	0.	16.62	2.80	1.84	0.11	24.06	18.61
MA	4528	2449	45.9	16.25	0.04	26.12	1.87	1.32	0.39	33.92	19.96
MK	1687	1040	38.4	25.07	0.	21.28	2.78	3.02	0.	28.80	19.02
MMA	3371	2243	33.5	5.87	0.	29.19	1.45	1.30	0.05	39.98	22.10
MBUR	2676	1666	37.7	12.89	0.	27.16	1.75	1.30	0.22	34.52	22.04
MFR	1815	1117	38.5	21.98	0.	24.95	4.40	0.99	0.33	32.01	15.31
NEK	563	376	33.2	24.68	0.	18.82	4.97	4.61	0.	23.80	23.09
THKO	2306	1588	31.1	12.44	0.	26.88	0.91	2.21	0.04	32.95	24.54
HI	1713	1469	14.2	4.78	0.	0.75	26.67	0.	8.75	24.40	34.20
MG	479	379	20.9	0.62	0.	0.	35.90	0.	6.05	22.54	34.86
MP	677	459	32.2	6.20	0.14	0.44	38.99	0.	4.57	23.48	26.14
Ssp	3168	2240	29.3	7.69	0.09	1.05	28.56	0.	8.14	23.88	30.49
EC	4290	3394	20.9	3.40	0.02	0.37	32.96	0.	8.01	23.55	31.59
HP	1577	1141	27.6	14.45	0.	1.58	25.55	0.	5.32	27.07	25.87
BS	4100	3071	25.1	8.70	0.02	1.19	24.43	0.02	5.26	29.24	31.04
BH	4066	2830	30.4	14.24	0.02	0.71	23.75	0.	5.09	26.58	29.53
BB	1639	764	53.4	43.74	0.	2.44	16.35	0.	3.35	19.03	14.88
AE	1522	1321	13.2	7.95	0.	3.35	13.66	0.06	4.99	31.93	38.04
MT	3996	2404	39.8	0.47	0.	0.	49.37	0.	6.20	18.19	25.75
MTC	4203	2327	44.6	9.44	0.	0.04	44.15	0.	5.28	16.84	24.22
ML	1604	1079	32.7	7.98	0.06	0.12	34.47	0.	7.54	17.83	31.98
TP	1031	691	33.0	22.89	0.19	0.87	26.86	0.	7.08	18.71	23.18
CT	877	642	26.8	4.56	0.11	0.57	36.25	0.	8.66	18.70	31.01
RP	837	729	12.9	1.91	0.	0.	25.68	0.	10.63	24.73	37.03
CJ	1634	1281	21.6	10.77	0.06	0.55	25.45	0.	6.11	25.64	31.33
CP	1052	658	37.5	16.15	0.	0.85	32.41	0.	7.03	15.58	27.85
TM	1849	1488	19.5	11.62	0.	3.08	13.25	0.05	4.75	32.28	34.93
DR	3117	2000	35.8	27.84	0.19	1.53	18.83	0.	5.29	20.62	25.56
NM	2081	1365	34.4	23.45	0.04	0.48	24.50	0.	7.78	14.99	28.06
XF	2830	1533	45.8	35.68	0.03	0.63	23.81	0.	6.85	11.27	21.20
VC	3837	2635	31.3	13.29	0.02	0.18	31.11	0.	8.93	17.72	28.66
PAE	5570	4050	27.3	13.55	0.10	0.55	26.71	0.03	8.77	18.95	30.84
B	575	523	9.0	0.	0.	0.	22.60	0.	14.08	15.13	46.60
LMO	2846	2157	24.2	2.88	0.03	0.10	33.86	0.	6.18	25.52	31.36
LIN	2968	2141	27.9	5.18	0.	0.26	35.64	0.	5.12	24.59	29.14
STY	4395	3043	30.8	8.46	0.09	0.20	35.22	0.02	7.50	19.38	28.12
YP	3895	2744	29.6	9.52	0.10	0.28	31.39	0.	8.72	21.56	28.26
SAMU50	2714	1901	30.0	2.21	0.	0.07	37.32	0.	4.75	25.64	29.95
SAN315	2594	1859	28.3	0.42	0.	0.03	36.81	0.	4.93	26.63	31.14
SPY	1696	1231	27.4	14.38	0.05	1.06	26.00	0.	5.71	22.40	29.77
MM	7275	4580	37.0	17.47	0.10	0.50	27.45	0.02	6.35	20.74	27.03
SM	6205	4296	30.8	10.29	0.06	0.43	29.79	0.	6.28	22.99	29.91
AGRT	5299	3812	28.1	12.02	0.07	0.22	26.91	0.01	7.41	21.87	31.00
MB	3953	2392	39.5	0.65	0.	0.	48.82	0.	5.59	18.87	26.05
SCO	7810	4387	43.8	27.87	0.42	1.03	22.35	0.02	5.58	19.28	22.62
UU	614	444	27.7	12.21	0.	1.79	23.28	0.	4.88	24.42	27.03
SHFL	4068	2782	31.6	2.63	0.	0.09	34.66	0.	9.24	24.87	27.94
LL	2321	1587	31.6	17.01	0.04	0.94	23.52	0.	5.81	22.79	29.55
RCO	1374	827	39.8	26.63	0.	0.58	26.49	0.	6.62	16.44	23.21
CCR	3737	2513	32.8	19.29	0.21	0.64	26.41	0.05	8.69	16.10	27.99
NOS	5366	3214	40.1	19.79	0.11	1.13	24.58	0.03	6.70	20.81	26.46
TSE	2475	1685	31.9	9.17	0.	0.36	28.04	0.	9.37	21.33	31.67
TTE	2588	1863	28.0	16.80	0.	2.08	16.30	0.	4.55	29.63	30.56
BFL	583	536	8.1	0.51	0.	0.	21.95	0.	14.40	14.75	48.37
PRO	1882	1166	38.0	13.97	0.	0.26	30.71	0.	10.46	15.09	29.48
PMT	2265	1405	38.0	16.42	0.04	0.26	30.90	0.	10.02	14.92	27.37
PMM	1712	1167	31.8	8.23	0.	0.17	31.95	0.	9.92	15.94	33.76
WS	2044	1580	22.7	10.42	0.	0.78	23.77	0.	6.31	28.71	29.99
PL	4683	2861	38.9	15.58	0.21	1.02	34.25	0.06	6.53	18.00	23.98
VPR	4832	3295	31.8	13.90	0.	0.26	30.15	0.	7.63	19.59	28.35
VVYJ	5028	3281	34.7	16.20	0.	0.39	29.95	0.	7.12	19.17	27.12