Molecular Biology and BioInformations
Fredj Tekaia
.
Bioinformatics and Comparative Genome Analysis Courses
Genomes
SACSO: Systematic Analysis of Completely Sequenced Organisms
Documents/Bibliographies/Informations Search
Molecular Biology related Servers
Collection of single and multiple databases
Protein Structure and 3D Modeling
On-line sequence analysis and search tools
Molecular Biology related Servers
University of Geneva (Expasy)
EBI
European Bioinformatics Institute
NCBI The National Center for Biotechnology Information
Human Retrovirus and Aids Database
(Los Alamos)
IGBMC - Strasbourg
ABI:Atelier Bioinformatique
National Center for Genome Resources
(Genome Sequence DB, SIGMA System for Integrated Map Assembly)
BROAD Institute
Center for Genome Research
Molecular Biology Gateway to WWW
TIGR
Amos' WWW links page
Back to the top
Collection of databases
SwissProt Protein Sequence Database
DBGET Database Integrated Database Retrieval System
(Japan)
ncbi Entrez Browser
(DNA/RNA+Protein+Medline subset)
Prosite- Dictionary of protein sites and Patterns
IMGT
(at EBI)
Whitehead Institute for Biomedical Research/MIT Center for Genome Research
Swiss-2DPage- 2D-Polyacrylamide Gel Electrophoresis Database
BankIt
GenBank Submissions by WWW
WebIn - EBI WWW Sequence Submission Tool
C elegans server at UT Southwestern
The virtual WWW Virtual Library - Drosophila
Saccharomyces
Saccharomyces Genomic Information Resource
(Saccharomyces Genome Database at Stanford)
BMERC
Back to the top
Protein Structure and 3D Modeling
(see also
Documents
)
Dali server
(Compares protein structures in 3D)
SCOP
Structural Classification of Proteins (structural and evolutionary relationships - PDB proteins)
Cambridge Crystallography Data Centre
Proceedings from the Macromolecular Crystallography Computing School
Back to the top
On-line sequence analysis and search tools
BCM Search Launcher
(Protein sequence/pattern search + BEAUTY)
Blast Search (ncbi)
HOMOLOGENE
ProDom
(The Protein Domain Database)
ClustalW multiple Alignment at ebi
Blocks WWW server
MEME
Multiple EM for Motif Elicitation
Meta-MEME
(Motif-based hidden Markov modeling of protein families)
RepeatMasker
SignalP
(Signal peptide cleavage)
TMHMM
-
Transmembrane Helix Prediction
SMART
(Simple Modular Architecture Research Tool)
PFscan
(ProfileScan Search a protein sequence against a profile database)
InterPro
(Integrated Resources of Protein Domains and Functional Sites)
ScanProsite-Protein against Prosite
Pfam
(Protein Domain families)
HOBACGEN(Bacterial Families)
Pattern_Discovery (teiresias)
ProClass
(nr protein db organized according to family relationships)
Homology Search
(Fasta, Blast & MPsearch)
Amino Acid Composition - Identify a protein by its amino acid composition
TagIdent tool - Get the SWISS-PROT proteins closest to a given pI and Mw
Sequence Interpretation Tools
(Sequence Motif Search, Sequence Homology Search, Prediction of Protein Sorting Signals)
The PredictProtein Server (MaxHom/PHD)
(Chris Sander group)
Protein Sequence Analysis
(PSA at Boston University)
Tandem repeats Finder
Sequence Viewer
Center for Computational and Experimental Genomics
Back to the top
Fredj Tekaia
.
goto Pasteur Home-Page