Genomes Analysis

  • Systematic Analysis of Completely Sequenced Organisms
  • Genolevures
  • TubercuList
  • Mycobacterium leprae
  • CandidaDB
  • List of completely sequenced organisms
  • Bacterial Genome Projects (ncbi)
  • Eukaryotes Genome Projects (ncbi)

    Eukaryotes
    1. Yeast
    2. C. elegans C.elegans_SCIENCE98
    3. Berkeley Drosophila Genome Project
    4. A. thaliana(TIGR)
    5. Encephalitozoon cuniculi
    6. Human Genome (ncbi)
    7. Ensembl
    8. UCSC
    9. genome/central
    10. MITOMAP
    11. s. pombe (Sanger)
    12. Rice genome
    13. Fugu genome project - Fugu rubripes
    14. PlasmoDB (The Plasmodium falciparum Genome Database)
    15. Anopheles gambiae
    16. Neurospora crassa
    17. S. paradoxus, S. mikatae, S. bayanus

    Archaea
    1. Methanococcus jannaschii
    2. Methanobacterium thermoautotrophicum
    3. Archaeoglobus fulgidus
    4. Pyrococcus horikoshii OT3
    5. Pyrococcus abyssi
    6. Aeropyrum pernix K1
    7. Thermoplasma acidophilum
    8. Sulfolobus solfataricus P2 Genome
    9. Thermoplasma volcanium
    10. Halobacterium_sp. NRC-1
    11. P. furiosus
    12. Sulfolobus tokodaii
    13. Pyrobaculum aerophilum
    14. Methanosarcina acetivorans (C2A)
    15. Methanopyrus kandleri AV19
    16. Methanosarcina mazei strain Goe1
    17. Methanococcoides burtonii
    18. Methanogenium frigidum

    Bacteria
    1. Haemophilus influenzae
    2. Mycoplasma genitalium
    3. Synechocystis sp.
    4. Mycoplasma pneumoniae
    5. Helicobacter pylorï and H. pilori strain J99
    6. E. coli
    7. Subtilis Web Server
    8. Borrelia burgdorferi
    9. Aquifex aeolicus complete genome
    10. Mycobacterium tuberculosis H37Rv TubercuList
    11. The Treponema pallidum Genome Database (TPDB) Treponema pallidum (subsp. pallidum (Nichols) genome home Page.)
    12. Chlamydia trachomatis
    13. Rickettsia prowazekii
    14. Campylobacter jejuni
    15. Chlamydia_pneumoniae or CP in Berkeley
    16. Thermotoga_maritima
    17. Deinococcus radiodurans
    18. Neisseria meningitidis
    19. Xylella fastidiosa Genome
    20. Vibrio_cholerae Genome
    21. Pseudomonas aeruginosa genome
    22. Bacillus_halodurans
    23. Buchnera sp.
    24. Ureaplasma urealyticum
    25. Lactococcus lactis subsp. lactis
    26. Mycobacterium leprae
    27. Pasteurella multocida
    28. Clostridium acetobutylicum ATCC824
    29. Clostridium perfringens
    30. Corynebacterium glutamicum
    31. Lactococcus lactis subsp. lactis
    32. Y. pestis
    33. Salmonella typhi CT18
    34. Staphylococcus aureus N315
    35. Staphylococcus aureus Mu50
    36. Streptococcus_pyogenes M1
    37. Sinorhizobium meliloti 1021
    38. Caulobacter crescentus CB15
    39. Rickettsia conorii Malish 7
    40. Agrobacterium_tumefaciens strain C58
    41. Mesorhizobium loti
    42. Listeria innocua
    43. Listeria_monocytogenes strain EGD
    44. Ureaplasma urealyticum
    45. Brucella melitensis chromosome I Chromosome ii
    46. Streptomyces coelicolor A3(2)
    47. Ralstonia solanacearum
    48. Fusobacterium nucleatum subsp. nucleatum ATCC 25586
    49. Shigella flexneri 2a str. 2457T
    50. Caulobacter crescentus CB15
    51. Rickettsia conorii Malish 7
    52. Nostoc sp. PCC 7120
    53. Candidatus Blochmannia floridanus
  • Complete Genome papers (references)
  • DOGS abbreviated genome size table
  • Top 100 largest viral genome sequences
  • Hemiascomycetes_yeasts
  • Candida albicans information
  • Candida albicansSequencing Project At Stanford
  • Neurospora_crassa
  • ToxoDB (The Toxoplasma Genome Resource)
  • TIGR Microbial Database (MDB)
  • Complete Genomes (ncbi)
  • Complete genomes (ebi)
  • The Sanger Centre
  • List of sequences genomes (GOLD)
  • Sequenced_organisms list (ncbi)
  • Genome sequencing Center (Washington University)
  • CELERA
  • Genome Databases in Japan
  • Genome_Sequencing Projects
  • The Sulfolobus solfataricus Genome Project
  • Microbial Genomics
  • Resources for Sequence Analysis and Annotation
  • TIGR Software Tools
  • SGD: Budding Yeasts Genome Comparison
  • eugenes (mapped genes in some completely sequenced organisms including: Yeast,worm, Fly, Human,...)
  • Proteome Analysis Database
  • Comparative Genometrics
  • Segmental Duplication DB
  • GenomePixelizer
  • BLAT Search Genome
  • Other docs and servers
  • Nature genomics
  • Life with 6000 Genes A. Goffeau et al. (Science: The Genome issue)
  • Complete Genome Sequence of Methanobacterium thermoautotrophicum H: Functional Analysis and Comparative Genomics
  • Mesuring-Genome evolution (PNAS)
  • Highly-specific protein sequence motifs for genome analysis(PNAS)
  • A Gene Map of the Human Genome G.D. Shuler et al. (Science: The Genome issue)
  • ESTablishing a Human Transcript Map (Mark S. Boguski & Gregory D. Schuler)
  • Complete Genomes (Minimal gene set, H. influenzae, M. genitalium, E. coli)
  • TIGR
  • Bacillus Subtilis
  • MycDB
  • GeneCards
  • Danish Centre for Human Genome Research
  • Genomic and Genetic Resources on the World Wide Web
  • BLASTP Protein against complete genomes
  • list of BLAST searching in Genome-specific DBs
  • MIPS
  • PEDANT:Protein Extraction, Description, and ANalysis Tool (at MIPS)
  • Saccharomyces Genome Database(SGD)
  • Yeast Gene Duplications
  • YPD (Yeast Protein Database)
  • S. pombe - S. cerevisiae homologues table
  • WormPD (C. elegans Proteome Database)
  • GenomeNavigator: Saccharomyces cerevisiae Genome Index
  • Global Gene Hunter (Saccharomyces cerevisiae genes)
  • Methanococcus jannaschii functions
  • Microbial-genomes
  • Getting the Most Structure-Function Based Genomics
  • CHI: Featured Conferences
  • Protein Family WWW sites
  • Pathogens home page
  • Finding genes by computer: the state of the art
  • Genomics: A Global Resource
  • EcoCyc:E. Coli - Query By Name
  • E.coli ProtTable at ncbi
  • CUTG (Codon Usage Table selected from genbank)
  • DOGS (Database of Genome Sizes)
  • Advanced Center for Genome Technology - ACGT
  • Enzyme Nomenclature
  • DOE Microbial Genome Program
  • The NCBI Taxonomy Homepage
  • Virtual Genome Center
  • Blazing a Gentic Trail (Book)
  • XREFdb (Cross-referencing the Genetics of Model Organisms with Mammalian Phenotypes)
  • WIT (Interactive Metabolic Reconstruction on the Web)
  • General Function Overview"
  • Transport-Proteins Classification
  • Genome Analysis: comparison of the Transport capabilities of several bacteria
  • A Comparative Analysis of ABC Transporters in Complete Microbial Genomes
  • COGs
  • Combinatorial pattern discovery in biological sequences: the TEIRESIAS algorithm
  • server
  • DIVCLUS:an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins.
  • Replicational and transcriptional selection on codon usage in Borrelia burgdorferi
  • PROMISE (The PROsthetic groups and MetalIons in Protein Active Sites Database)
  • GeneCencus Genome Comparaisons

  • Center for Computational and Experimental Genomics (Waterman)

  • Journees Portes Ouvertes 29-30 Mai 1999

    Other genomes
  • Xanthomonas axonopodis pv citri the causative agent of citrus canker
  • FAPESP (Genomes/Brasil
  • Pathogen Genomics
  • Large-Scale Gene Expression and Microarray Links and Resources
  • DNA Microarray (gene-chips)
  • Gonome Glossary
  • Glossary_of genetic terms
  • WhitePaper (Genomes)

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    Comments and suggestions are welcome. Fredj Tekaia