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Search Bibliographies and Informations
		
Search PubMed
Entrez
bioLib Pasteur
Search citations with Google scholar
ISI web Knowledge
NLM's Internet Grateful Med
Infotrieve Online
			
Bibliotheque Pasteur
Bibliotheque Pasteur- Catalogue
Biowurld
SCIRUS (SCientific Information search)
Google
Highwire (Stanford)
			
BioReference
Bibliography on Features, Patterns, Correlations in DNA and Protein Sequences

SRS
SeqAnalRef
Protein Science
Bibliographies A collection of computer bibliographies
Joe Felsenstein's Bibliography of Theoretical Population Genetics
ncbi Staff Bibliography
A list of molecular modeling literature references
 (NIH Molecular Moldeling Home Page)
CNRS GDR 1029 : Informatique et Genome
DNA Repair
MathSearch
(search a collection of mathematical Web material)
Search bionet.journals.contents newsgroup

Life Science Dictionary
Glossary_of Genetic Terms
Gonome_Glossary
Graphics Gallery (Diapos)
Kimball's Biology Pages
Computing Dictionary
Dictionary of Cell Biology
Dictionnary: Hypertext Webster Interface

The Biocatalog Catalogue of Biological Software
Biology resources (software,etc..)
DBcat (DB catalog)

Read BLAST and FASTA search results with Web browsers,
 using blast2html and fasta2html scripts
Fig2java


BIOSCI server

Information Filtering Resources (U. of Maryland Project)
	
Connectivity with Africa 
(List of e-mail adresses in different countries of Africa)
		
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Papers
		
Universal tree related papers 
Evolution (history) (by Dr Forsdyke)
Bioinformatics_(Genomics)
A Guide to Sequence Searching (Hypertext document on sequence comparisons using blast and fasta programs)

Blocks search (results interpretations, references)
Blocks maker(help)
Blocks (papers in postscript format)
The Modular Arrangement of Proteins as Inferred 
from Analysis of Homology (ProDom Article)

Barton: Protein Sequence Alignment and Database Scanning

Penn State - Bioinformatics Group (sim4)
Center for Computational and Experimental Genomics

Computing for Molecular Biology (strings, sequences, 
multiple alignments, evolutionary trees)
Bibliography on Studies of Correlation Structures of DNA Sequences

Papers&Abastracts from the Genome informatics group at WHI
SEView: A Java applet for browsing Molecular Biology Data
White Paper (Genomes)
		
Books

List_of Books

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Courses
		
Documentation and Bioinformatics Courses

List of Courses on Bioinformatics
Computational_Biology Course Web Site (JHU)
Computational Molecular Biology
Exploring Distant Protein Sequence Relationships
Computational Genomics
Computational Genomics (Bill Pearson)
BIMM Computer Analysis of Genome Information

Hidden Markov Models and Protein Sequence Analysis
Representations and Algorithms for Computational Molecular Biology (Stanford)
Introduction
to computational Molecular Biology

SANBI Bioinformatics courses
BLAST_Course_1
BLAST_Course_2
BLAST_Course_3
Guide_to Sequence Analysis
Database Searching by Sequence
An_introduction to Biocomputing

List of courses

Genome Informatics
Introduction to Human Genome Computing via the WWW
Biocomputing Tutorials
BCD BioComputing Tutorial
Beginner's guide to Molecular Biology

Bioinformatics Course at Ain Shams University

Multiple Sequence Alignment and Molecular Phylogenetic Analysis
Lecture on Molecular Evolution I

Lesson from Genomics and comparative Genomics

Virtual courses on the Web
Special Topics in Virology

Biocomputing Course Resource List (Bibliographies and 
Examples of Hypertext Books)
An Internet ON LINE Biocomputing Course
Algorithms for Molecular Biology

CRI-MAP Tutorial

BioInformer Events Calendar
		
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Reports/Reviews/Usermanuals
		
The Phred/Phrap/Consed System Home Page
phrap/phred/consed

Genome Research paper
Genome paper Research Phred I
Genome Research paper Phred II

Fast Computation of Maximal Repeats in Complete Genomes
SPLASH
GenomePixelizer - Genome Visualization Tool
ACT
REPRO (repeats in a single sequence)
Appendix A. Software and DB for Computational Biology on the Internet

Free Software in Molecular Biology for Mac and Wintel Computers

Mathematical support for Molecular Biology
 (workshop abstract texts: alignments, phylogeny,..)

VISTA

The Computational Biochemistry Server (at ETHZ Zurich)

BIMAS Bioinformatics&Molecular Analysis Section (NIH)
 (Documents and program usermanuals)
SAM:Sequence Alignment and Modeling System
UCSC HMM Applications
HMM:Tutorial
HMMER:Hiddeb Markov Model Software (profile-HMMs)
HMMER_User's Guide

MCL

SEALS

Evolution, Science, and Society
 (a "white paper" on behalf of the field of evolutionary biology)
Origin of Life
National Academy Press : Reading Room

Swiss-Prot Usermanual
Swiss-Prot release notes

PROSITE usermanual
Document describing the syntax of profiles in PROSITE

Advices in DB searching
blast and blast3 manuals in postscript and in text format
Example of blast output (How to read it)

FASTA algorithm and an example of FASTA output

SAPS manual and an output example

PHYLIP Phylogeny Inference Package
PAML
Phylogeny Programs Available

TreeView
DNArates
LAMARC

Bootstrap analysis script1 and script2
(local C-shell scripts to perform PHYLIP bootstrap analysis)
Tree of Life
Phylocode

GCG version 8.1 Documentation at Pasteur

gcg server

Primer Prediction and Analysis Programs
primer3
GeneFisher
xprimer

123Genomics

Readseq Help File

Amino Acids
Amino Acid Information
Genetic Code for amino acids
Dotter (manual)

Evolution (Set of servers related to evolution)

Pedro's Guides, Tutorials

A Theory on Meme storage in DNA
The X-PLOR home page (On-line manual - tutorials,..)

Linkage Analysis Users's Guide

Bionformatics FAQs
                
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Unix/Internet/Languages
		
Bio.perl.org
Perl home Page
The perl Institute
Comprehensive_Perl Archieve Network
CGI.pm
CPAN
The cgi-lib.pl Home Page

Java Tutorial
png
gimp (The GNU Image Manipulation Program)
GNU Software
Computer and Internet

FOLDOC (Free On-Line Dictionary Of Computing)

Virtual_Network Computing

General Information documents (Molecular Biology oriented services,
E-mail servers, databases, software, FTP sites,etc...)

MIME (MUltipurpose Internet Mail Extensions)
Genome_Map Viewer(GMV)
		
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Other documents
		
The Nobel Foundation
Local menu Quick Reference
Statistics on Sequence databases
BankIt (WWW Submission Tool for GenBank Sequences)
WebSub (DNA sequence submission to GSDB)
		
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Journals/Newsletters
		
Science
nature
PLOS BIOLOGY (Public Library Of Sciences)
Plos Computational Biology
Plos Genetics
Genome Research
nature genetics
PNAS
Human Molecular Genetics
Bioinformatics
NAR
NAR issue on databases
Journal of Molecular Biology
Genome Biology
Gene
Journal of Molecular Evolution
FEBS letters

The Global bioinformatics news service
GenomeBiology
BMC Genomics
BioMed Central
Science@Direct
Microbiology and Molecular Biology Reviews
Highwire Press
Journal of the National Cancer Institute
embnet.news
CCP11 Newsletters
Whitehead Institute/MIT Center for Genome Research

Meetings in Bioscience and Medecine

ISMB 2000
Periodiques en Ligne

		
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WWW Virtual Libraries
		
UCSC best links
Amos'WWW links Page

Institut For Systems Biology
Biosciences (Compact introduction to Virtual Libraries)
Computing
Mathematics (index)
StatLib Index
Chemistry (science)
Danny's Book Reviews
		
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Research and Collaborative Projects
		
Collaborative Biomolecular Tools (CBMT)
		


Informations Internes

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Comments and suggestions are welcome. 

Fredj Tekaia tekaia@pasteur.fr