EMBO Practical Course on Bioinformatics and Comparative Genome Analyses

EMBO Practical course: Bioinformatics and Comparative Genome Analyses

Stazione Zoologica Anton Dohrn - Naples - Italy

May 7 - May 19, 2012

Organizers/Contact:
Giuseppe D'Onofrio, Stazione Zoologica Anton Dohrn - Naples - Italy.
Fredj Tekaia, Institut Pasteur Paris - France.

Course Programme

Week 1 : Bioinformatics and Genome Analyses I

Week 2 : Bioinformatics and Genome Analyses II

Week 1 (May 7 - May 13 ): Bioinformatics and Genome Analyses I

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Day	Date	8:30-10:00	10:30-12:00	14:00-15:30	16:00-17:30	18:30-19:30
Sunday	May 6			Hotel check in	Hotel check in
Monday	May 7	Welcome Giuseppe D'Onofrio Course Introduction and overview Giuseppe D'Onofrio - Fredj Tekaia Computing Network Environment Tru Huynh	Self-introduction & Oral Presentations Students	Self-introduction & Oral Presentations Students	Self-introduction & Oral Presentations Students	Dinner
Tuesday	May 8	Large-scale Genomes Comparisons Introduction the practical sessions Fredj Tekaia Institut Pasteur Paris	Large-scale Genomes Comparisons (Practical) Fredj Tekaia Institut Pasteur Paris	Large-scale Genomes Comparisons Fredj Tekaia Institut Pasteur Paris	Large-scale Genomes Comparisons Fredj Tekaia Institut Pasteur Paris	Dinner
Wednesday	May 9	Genomes Visualization with circos Session-1 - Visualization principals - Course Introduction Martin Krzywinski Genome Sciences Centre, Vancouver - Canada	Genomes Visualization with circos Session-2-preamble / Session-2 Martin Krzywinski Genome Sciences Centre, Vancouver - Canada	Genomes Visulatization with circos Session-3 / Session-4 / Session-5 Martin Krzywinski Genome Sciences Centre, Vancouver - Canada	Genomes Visualization with circos Session-6 (Yeast comparisons: Results Visualization) Martin Krzywinski Genome Sciences Centre, Vancouver - Canada	Evening Lecture: Freedom for Research - Anton Dohrn and Science Mangement Christiane Groeben
Thursday	May 10	Multiple Sequence Alignments (Review) Cedric Notredame Centre de Regulacio Genomica, Barcelona - Spain	Multiple Sequence Alignments (Practical) Cedric Notredame CRG, Barcelona - Spain	Phylogenic Trees Construction (Review) Cedric Notredame CRG, Barcelona - Spain	Phylogenetic Trees Construction (Practical) Cedric Notredame CRG, Barcelona - Spain	Dinner
Friday	May 11	Whole Genomes Alignments (Review) Inna Dubchack Genomic Division Lawrence Berkeley National Laboratory Berkeley, CA - USA	Whole Genomes Alignments (Practical) Inna Dubchak Genomic Division Lawrence Berkeley National Laboratory Berkeley, CA - USA	Whole Genomes Alignments (Practical) Inna Dubchak Genomic Division Lawrence Berkeley National Laboratory Berkeley, CA - USA	Orthologs Inference: Guidelines to find the most appropriate Solution Kalliopi Trachana Structural and Computational Biology Unit - EMBL-Heidelberg - Germany	Dinner
Saturday	May 12	Orthologs Prediction and Classification (Practical) Kalliopi Trachana Structural and Computational Biology Unit - EMBL-Heidelberg - Germany	Orthologs Prediction and Classification (Practical) Kalliopi Trachana Structural and Computational Biology Unit - EMBL-Heidelberg - Germany	Free time	Free time	Gala Dinner (Royal Continental Hotel)

Sunday

May 13

Visit to Herculaneum

Week 2 (May 14 - May 19 ): Bioinformatics and Genome Analyses II

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Day	Date	8:30-10:00	10:30-12:00	14:00-15:30	16:00-17:30	18:30-19:30
Monday	May 14	NGS Technology, Mapping and Analysis Gary Benson Boston University - USA	NGS Technology, Mapping and Analysis (Practical) Gary Benson Boston University - USA	Read Mapping Algorithms Gary Benson Boston University - USA	Read mapping algorithms Gary Benson Boston University - USA	Dinner
Tuesday	May 15	Chip-Seq: Methods and applications in epigenomic studies (Review) Claudia Angelini Consiglio Nazionale delle Ricerche, Naples - Italy	Chip-Seq (Practical) Claudia Angelini CNR, Naples - Italy	Chip-Seq (Practical) Claudia Angelini NCR, Naples - Italy	Chip-Seq (practical) Claudia Angelini CNR, Naples - Italy	Dinner
Wednesday	May 16	Gene expression analysis (Review) Roberto Tagliaferri Dept. Maths and Informatics, Universita di Salerno, Italy	Gene expression analysis (Practical) Roberto Tagliaferri Universita di Salerno, Itali	Gene expression analysis (Practical) Roberto Taglaferri Universita di Salerno - Italy	The base composition variability in vertebrate genomes Giuseppe D'Onofrio Stazione Zoologica Anton Dohrn, Naples - Italy	Dinner
Thursday	May 17	Genome Databases & Bibliographic Resources Fredj Tekaia Institut Pasteur Paris	Transcriptome mining: examples of meta-analysis using gene expression data Remo Sanges Stazione Zoologica Anton Dohrn, Naples - Italy	Human gene and Protein Networks Landscape Javier de Las Rivas Bioinformatics & Functional Genomics, Salamanca - Spain	Human gene and Protein Networks Landscape (Practical) Javier de Las Rivas Bioinformatics & Functional Genomics, Salamanca - Spain	Dinner
Friday	May 18	Eukaryotic Genomes (Part 1) Bernard Dujon Institut Pasteur Paris	Eukaryotic Genomes (Part 2) Bernard Dujon Institut Pasteur Paris	Cytoscape (Practical) Javier de Las Rivas Bioinformatics & Funtional Genomics, Salamance - Spain	Cytoscape (Practical) Javier de Las Rivas Salamanca - Spain	Special Dinner
Saturday	May 19	Course evaluation Participants	Acknowledgements	Free	Free	Free

Sunday

May 20

Hotel check out

Course home page

Fredj Tekaia
Last Modified: May, 4, 2012 EST