EMBO Practical course: Bioinformatics and Comparative Genome Analyses

Institut Pasteur Paris - France

June 27 - July 9, 2011

Organizer/Contact:
  • Fredj Tekaia, Institut Pasteur Paris - France.

  • Course Programme
  • Week 1 : Bioinformatics and Genome Analyses I
  • Week 2 : Bioinformatics and Genome Analyses II

  • Week 1 (June 27 - July 9 ): Bioinformatics and Genome Analyses I

    Day
    Date
    9H00-10H30
    11H00-12H30
    14H30-16H00
    16H30-18H00
    18H00-19H00
    Sunday
    June 26


    Hotel check in
    Hotel check in
    Hotel Check in
    Monday
    June 27
    Course Introduction and overview
    Fredj Tekaia
    Students self introduction
    Computer Environment Introduction
    Tru Huynh
    Institut Pasteur Paris
    Whole Genome Databases
    Fredj Tekaia
    Institut Pasteur Paris
    Bibliographic Resources
    Fredj Tekaia
    Institut Pasteur Paris
    Extension - QA

    Tuesday
    June 28
    Large-scale Genomes Comparisons
    Fredj Tekaia
    Institut Pasteur Paris
    Large-scale Genomes Comparisons (Practical)
    Fredj Tekaia
    Institut Pasteur Paris
    Large-scale Genomes Comparisons
    Fredj Tekaia
    Institut Pasteur Paris
    Large-scale Genomes Comparisons
    Fredj Tekaia
    Institut Pasteur Paris
    Oral Presentations
    Wednesday
    June 29
    Genomes Visualization with circos
    Session-1
    Martin Krzywinski
    Genome Sciences Centre, Vancouver - Canada
    Genomes Visualization with circos
    Session-2-preamble / Session-2
    Martin Krzywinski
    Genome Sciences Centre, Vancouver - Canada
    Genomes Visulatization with circos
    Session-3 / Session-5
    Martin Krzywinski
    Genome Sciences Centre, Vancouver - Canada
    Genomes Visualization with circos
    Session-6
    Martin Krzywinski
    Genome Sciences Centre, Vancouver - Canada
    Oral Presentations
    Thursday
    June 30
    Multiple Sequence Alignments
    Aidan Budd
    EMBL, Heidelberg - Germany
    Multiple Sequence Alignments
    Aidan Budd
    EMBL, Heidelberg - Germany
    Interpreting Phylogenetic Trees
    Aidan Budd
    EMBL, Heidelberg - Germany
    Phylogenetic Trees Construction
    Aidan Budd
    EMBL, Heidelberg - Germany
    Oral Presentations
    Friday
    July 1rst
    Whole Genomes Alignments - Synteny maps
    Inna Dubchack
    Genomic Division
    Lawrence Berkeley National Laboratory
    Berkeley, CA - USA
    Whole Genomes Alignments
    Inna Dubchak
    Genomic Division
    Lawrence Berkeley National Laboratory
    Berkeley, CA - USA
    Whole Genomes Alignments
    Inna Dubchak
    Genomic Division
    Lawrence Berkeley National Laboratory
    Berkeley, CA - USA
    Orthologs Inference
    Christophe Dessimoz
    ETH, Zurich - Switzerland
    Extension - QA
    Saturday
    July 2
    Orthologs Prediction and Classification
    Christophe Dessimoz
    ETH, Zurich - Switzerland
    Orthologs Prediction and Classification (Practical)
    Christophe Dessimoz
    ETH, Zurich - Switzerland




    Sunday
    July 3
    Free

    Week 2 (July 4 - July 9 ): Bioinformatics and Genome Analyses II

    Day
    Date
    9H00-10H30
    11H00-12H30
    14H30-16H00
    16H30-18H00
    18H00-19H00
    Monday
    July 4
    Genome Wide Association Studies I
    Ahmed Rebai
    Centre Biotechnology Sfax - Tunisia
    GWAS
    Ahmed Rebai
    Centre Biotechnology of Sfax - Tunisia
    GWAS II
    Ahmed Rebai
    Centre Biotechnology of Sfax - Tunisia
    GWAS
    Ahmed Rebai

    Centre Biotechnology of Sfax - Tunisia
    Oral Presentations
    Tuesday
    July 5
    Imputation and Meta-analysis in GWAS
    Kalliope Panoutsopoulou
    Sanger Institute, Cambridge - UK
    Practical: Association Testing and Meta-analysis of GWAS
    Kalliope Panoutsopoulou
    Sanger Institute, Cambridge - UK
    Comparative Genomics and Dynamics of DNA Repeats in Eukaryotes
    Guy-Franck Richard
    Institut Pasteur Paris
    Oral Presentations
    Participants
    Oral Presentations
    Wednesday
    July 6
    Methods for Repeat Detection in Nucleotide Sequences
    Gary Benson
    Boston University - USA
    Methods for Repeat Detection (Practical)
    Gary Benson
    Boston University - USA
    Next Generation Sequencing: Technology, Mapping and Analysis
    Gary Benson
    Boston University - USA
    Next Generation Sequencing: read mapping algorithms
    Gary Benson
    Boston University - USA
    Extension - QA
    Thursday
    July 7
    Eukaryotic Genomes
    Bernard Dujon
    Institut Pasteur Paris
    Eukaryotics Genomes
    Bernard Dujon
    Institut Pasteur Paris
    Realistic Models and Efficient Algorithms in Bioinformatics/Biophysics Analyses of Genomes
    Edouard Yeramian
    Institut Pasteur Paris
    Ancient and Recent Evolution in Vertebrate Genomes
    Hugues Roest Crollius
    Institut de Biologie - Ecole Normale Superieure Paris - France
    Extension - QA
    Friday
    July 8
    Human gene and Protein Networks Landscape
    Javier de Las Rivas
    Bioinformatics & Functional Genomics, Salamanca - Spain
    PPI - HGPNL
    Javier de Las Rivas
    Bioinformatics & Functional Genomics, Salamanca - Spain
    PPI - HGPNL
    Javier de Las Rivas
    Bioinformatics & Functional Genomics, Salamanca - Spain
    PPI - HGPNL
    Javier de Las Rivas
    Bioinformatics & Functional Genomics, Salamanca - Spain
    Social activities
    Saturday
    July 9
    Course evaluation
    Participants
    Acknowledgements
    Free
    Free
    Free
    Sunday
    July 10
    Hotel check out
    Back to top program
    Course home page

    Fredj Tekaia
    Last Modified: June 10, 2011 EST