EMBO Practical Course on Bioinformatics and Comparative Genome Analyses

EMBO Practical course: Bioinformatics and Comparative Genome Analyses

Institut Pasteur Paris - France

June 27 - July 9, 2011

Organizer/Contact:
Fredj Tekaia, Institut Pasteur Paris - France.

Course Programme

Week 1 : Bioinformatics and Genome Analyses I

Week 2 : Bioinformatics and Genome Analyses II

Week 1 (June 27 - July 9 ): Bioinformatics and Genome Analyses I

Day	Date	9H00-10H30	11H00-12H30	14H30-16H00	16H30-18H00	18H00-19H00
Sunday	June 26			Hotel check in	Hotel check in	Hotel Check in
Monday	June 27	Course Introduction and overview Fredj Tekaia Students self introduction	Computer Environment Introduction Tru Huynh Institut Pasteur Paris	Whole Genome Databases Fredj Tekaia Institut Pasteur Paris	Bibliographic Resources Fredj Tekaia Institut Pasteur Paris	Extension - QA
Tuesday	June 28	Large-scale Genomes Comparisons Fredj Tekaia Institut Pasteur Paris	Large-scale Genomes Comparisons (Practical) Fredj Tekaia Institut Pasteur Paris	Large-scale Genomes Comparisons Fredj Tekaia Institut Pasteur Paris	Large-scale Genomes Comparisons Fredj Tekaia Institut Pasteur Paris	Oral Presentations
Wednesday	June 29	Genomes Visualization with circos Session-1 Martin Krzywinski Genome Sciences Centre, Vancouver - Canada	Genomes Visualization with circos Session-2-preamble / Session-2 Martin Krzywinski Genome Sciences Centre, Vancouver - Canada	Genomes Visulatization with circos Session-3 / Session-5 Martin Krzywinski Genome Sciences Centre, Vancouver - Canada	Genomes Visualization with circos Session-6 Martin Krzywinski Genome Sciences Centre, Vancouver - Canada	Oral Presentations
Thursday	June 30	Multiple Sequence Alignments Aidan Budd EMBL, Heidelberg - Germany	Multiple Sequence Alignments Aidan Budd EMBL, Heidelberg - Germany	Interpreting Phylogenetic Trees Aidan Budd EMBL, Heidelberg - Germany	Phylogenetic Trees Construction Aidan Budd EMBL, Heidelberg - Germany	Oral Presentations
Friday	July 1rst	Whole Genomes Alignments - Synteny maps Inna Dubchack Genomic Division Lawrence Berkeley National Laboratory Berkeley, CA - USA	Whole Genomes Alignments Inna Dubchak Genomic Division Lawrence Berkeley National Laboratory Berkeley, CA - USA	Whole Genomes Alignments Inna Dubchak Genomic Division Lawrence Berkeley National Laboratory Berkeley, CA - USA	Orthologs Inference Christophe Dessimoz ETH, Zurich - Switzerland	Extension - QA
Saturday	July 2	Orthologs Prediction and Classification Christophe Dessimoz ETH, Zurich - Switzerland	Orthologs Prediction and Classification (Practical) Christophe Dessimoz ETH, Zurich - Switzerland

Sunday

July 3

Free

Week 2 (July 4 - July 9 ): Bioinformatics and Genome Analyses II

Day	Date	9H00-10H30	11H00-12H30	14H30-16H00	16H30-18H00	18H00-19H00
Monday	July 4	Genome Wide Association Studies I Ahmed Rebai Centre Biotechnology Sfax - Tunisia	GWAS Ahmed Rebai Centre Biotechnology of Sfax - Tunisia	GWAS II Ahmed Rebai Centre Biotechnology of Sfax - Tunisia	GWAS Ahmed Rebai Centre Biotechnology of Sfax - Tunisia	Oral Presentations
Tuesday	July 5	Imputation and Meta-analysis in GWAS Kalliope Panoutsopoulou Sanger Institute, Cambridge - UK	Practical: Association Testing and Meta-analysis of GWAS Kalliope Panoutsopoulou Sanger Institute, Cambridge - UK	Comparative Genomics and Dynamics of DNA Repeats in Eukaryotes Guy-Franck Richard Institut Pasteur Paris	Oral Presentations Participants	Oral Presentations
Wednesday	July 6	Methods for Repeat Detection in Nucleotide Sequences Gary Benson Boston University - USA	Methods for Repeat Detection (Practical) Gary Benson Boston University - USA	Next Generation Sequencing: Technology, Mapping and Analysis Gary Benson Boston University - USA	Next Generation Sequencing: read mapping algorithms Gary Benson Boston University - USA	Extension - QA
Thursday	July 7	Eukaryotic Genomes Bernard Dujon Institut Pasteur Paris	Eukaryotics Genomes Bernard Dujon Institut Pasteur Paris	Realistic Models and Efficient Algorithms in Bioinformatics/Biophysics Analyses of Genomes Edouard Yeramian Institut Pasteur Paris	Ancient and Recent Evolution in Vertebrate Genomes Hugues Roest Crollius Institut de Biologie - Ecole Normale Superieure Paris - France	Extension - QA
Friday	July 8	Human gene and Protein Networks Landscape Javier de Las Rivas Bioinformatics & Functional Genomics, Salamanca - Spain	PPI - HGPNL Javier de Las Rivas Bioinformatics & Functional Genomics, Salamanca - Spain	PPI - HGPNL Javier de Las Rivas Bioinformatics & Functional Genomics, Salamanca - Spain	PPI - HGPNL Javier de Las Rivas Bioinformatics & Functional Genomics, Salamanca - Spain	Social activities
Saturday	July 9	Course evaluation Participants	Acknowledgements	Free	Free	Free

Sunday

July 10

Hotel check out

Course home page

Fredj Tekaia
Last Modified: June 10, 2011 EST