Advanced Course on Bioinformatic and Comparative Genome Analysis

Universidade Federal de Santa Catarina, Florianopolis, Brazil

June 30 - July 12, 2008

Organizers/Contact:

Alberto Davila
Instituto Oswaldo Cruz, FIOCRUZ - Brazil

Edmundo Grisard
Universidade Federal de Santa Catarina, Florianopolis - Brazil

Hugo Naya
Institut Pasteur Montevideo - Uruguay

Fredj Tekaia
Institut Pasteur Paris - France

With the financial support from:
Institut Pasteur Paris - EMBO - CNPq - QUADTRYP - FINEP.

  • Week 1 : Background: Material and Methods
  • Week 2 : Comparative Genomics (Methods - Applications) - What did we learn from genomes studies and perspectives

    • Week 1 (June 30 - July 5): Background: Material and Methods
    Day
    Date
    8H-9H45
    10H15-12H
    14H-15H45
    16H15-18H30
    Sunday
    June 29
    Installation in Hotel
    Installation in Hotel
    Monday
    June 30
  • Welcome
    Edmundo Grisard - Alberto Davila
  • Course introduction
    Fredj Tekaia
  • Students self-introduction
    		•
    UNIX/perl
    Mario Dantas
    Federal University of Santa Catarina
    Florianopolis - Brazil
    UNIX/perl
    Mario Dantas
    UFSC
    Florianopolis - Brazil
    UNIX/perl
    Mario Dantas
    UFSC
    Florianopolis - Brazil
    Tuesday
    July 1
    UNIX/perl
    Mario Dantas
    UFSC
    Florianopolis - Brazil
    UNIX/perl
    Mario Dantas
    UFSC
    Florianopolis - Brazil
    Genome Databases and Open Access Bibliographic Resources
    Antonio Basilio de Miranda
    FIOCRUZ - RIO - Brazil
    Genome Databases and Open Access Bibliographic Resources
    Antonio Basilio de Miranda
    FIOCRUZ - RIO - Brazil
    Edmundo Grisard
    UFSC - Florianopolis - Brazil
    Wednesday
    July 2
    Main algorithms with applications in Bioinformatics
    Gregory Nuel
    Universite Paris-Descartes - France
    Practical
    Gregory Nuel
    Universite Paris-Descartes - France
    Search for motifs
    Gregory Nuel
    Universite Paris-Descartes - France
    Practical
    Gregory Nuel
    Universite Paris-Descartes - France
    Thursday
    July 3
    Multiple Sequence Alignment
    Julie Thompson
    IGBMC - Strasbourg - France
    Practical
    Julie Thompson
    IGBMC - Strasbourg - France
    Phylogenic Reconstruction
    Julie Thompson
    IGBMC - Strasbourg - France
    Practical
    Julie Thompson
    IGBMC - Strasbourg - France
    Friday
    July 4
    Introduction to Phylogenomics
    Julie Thompson
    IGBMC - Strasbourg - France
    Practical
    Julie Thompson
    IGBMC - Strasbourg - France
    Molecular Evolution
    Fredj Tekaia
    Institut Pasteur Paris - France
    Practical
    Fredj Tekaia
    Institut Pasteur Paris - France
    Saturday
    July 5
    STINGRAY - ProtozoaDB
    Alberto Davila
    FIOCRUZ - Rio de Janeiro - Brazil
    Practical Molecular Evolution
    Fredj Tekaia
    Institut Pasteur - France
    Social activities
    Social and cultural activities: visit the fortress in Sao Jose da Ponta Grossa
    Sunday
    July 6
    Social and cultural activities:visit the dolphin bay.

    Week 2 (July 7 - July 12 ):
    Comparative Genomics (Methods - Applications) - What did we learn from genomes studies and perspectives
    Day
    Date
    8H-9H45
    10H15-12H
    14H-15H45
    16H15-18H30
    Monday
    July 7
    Large scale genomes comparisons
    Fredj Tekaia
    Institut Pasteur Paris - France
    Practical: Genomes comparisons
    Fredj Tekaia
    Institut Pasteur Paris - France
    Practical: Genomes comparisons
    Fredj Tekaia
    Institut Pasteur Paris - France
    Practical: Genomes comparisons
    Fredj Tekaia
    Institut Pasteur Paris - France
    Tuesday
    July 8
    Comparative Bacterial Genomics
    Joao Setubal
    Virginia Bioinformatics Institute - Blacksburg - USA
    Practical: Comparative Bacterial Genomics
    Joao Setubal
    Virginia Bioinformatics Institute - Blacksburg - USA
    Comparative Bacterial Genomics
    Joao Setubal
    Virginia Bioinformatics Institute - Blacksburg - USA
    Practical: Comparative Bacterial Genomics
    Joao Setubal
    Virginia Bioinformatics Institute - Blacksburg - USA
    Wednesday
    July 9
    Orthology Prediction for whole mammalian genomes (Part 1)
    Leo Goodstadt
    University of Oxford - UK
    Practicals
    Leo Goodstadt
    University of Oxford - UK
    Orthology Prediction for whole mammalian genomes (Part2)
    Leo Goodstadt
    University of Oxford - UK
    Practicals
    Leo Goodstadt
    University of Oxford - UK
    Thursday
    July 10
    STINGRAY - Practicals
    Alberto Davila
    FIOCRUZ - Rio de Janeiro - Brazil
    Introduction to mcl
    clustering of paralogs using mcl
    Fredj Tekaia
    Institut Pasteur Paris - France
    Bioinformatics aspects of microarray analyses
    Christian Probst
    ICC/FIOCRUZ - Curitiba - Brazil
    Introduction to Epigenomics
    (Animation)
    Andre Goffeau
    Universite Catholique Louvain - Belgique
    Friday
    July 11
    Yeast Genomology
    Andre Goffeau
    Universite Catholique Louvain - Belgique
    Fungal Genomics
    Gustavo Goldman
    Universidade de Sao Paulo - Brazil
    Gene content and whole genome methods in Phylogenomics
    Bas E. Dutilh
    CMBI - Nijmegen - The Netherlands
    Human disease gene identification in post genomics
    Sonia Abdelhak
    Institut Pasteur Tunis - Tunisia
    Saturday
    July 12
    Pathogenic trypanosomatids: Diagnosis, variability and comparative genomics
    Edmundo Grisard
    UFSC - Florianopolis - Brazil
    Course evaluation - EMBO questionnaire:
  • Course evaluation (selected/non selected students)
  • List of the students comments mentioned about the course
  • Acknowledgements
    		•
    Free afternoon
    Free afternoon
    Course closure dinner
    Sunday
    July 13
    		 Last leaving the Hotel
    Back to top program
    Course home page
    Fredj Tekaia
    Last Modified: Friday, September 5, 2008 EST