ygbD - hypF sequence

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.

ATG AGT AAC GGC ATT GTG ATC ATC GGT TCG GGC TTC GCC GCC CGC CAA CTG

GTG AAA AAT ATT CGC AAA CAG GAC GCC ACT ATT CCA TTA ACC CTG ATT GCC

GCC GAC AGC ATG GAT GAG TAC AAC AAA CCT GAC CTC AGC CAT GTT ATC AGT

CAG GGG CAA CGT GCC GAT GAC CTT ACC CGC CAG ACG GCG GGT GAA TTT GCC

GAG CAG TTT AAT CTG CAC CTG TTT CCA CAA ACC TGG GTG ACG GAT ATC GAT

GCC GAA GCC CGT GTG GTG AAA AGC CAG AAT AAT CAG TGG CAA TAC GAC AAG

CTA GTA CTG GCA ACC GGT GCC AGT GCC TTT GTC CCG CCT GTG CCT GGG CGT

GAG TTA ATG CTG ACG TTA AAT AGT CAG CAA GAG TAT CGC GCC TGT GAA ACG

CAA CTG CGG GAT GCC CGA CGC GTG TTG ATT GTT GGC GGT GGT TTG ATT GGT

AGC GAA CTG GCG ATG GAT TTT TGT CGT GCA GGC AAA GCG GTC ACG CTA ATC

GAC AAC GCT GCC AGT ATT CTG GCG TCG TTA ATG CCA CCG GAA GTA AGC AGC

CGC TTG CAG CAT CGG TTG ACG GAG ATG GGC GTT CAT CTG CTG TTG AAA TCT

CAG TTA CAG GGG CTG GAA AAA ACG GAT TCT GGC ATT CAG GCA ACG CTG GAC

CGC CAG CGC AAT ATC GAA GTG GAT GCG GTA ATT GCC GCC ACC GGA CTG CGC

CCG GAA ACC GCC CTG GCA CGA CGC GCC GGG CTG ACG ATT AAT CGC GGC GTT

TGC GTC GAT AGT TAT CTG CAA ACC AGT AAT ACC GAT ATT TAC GCG CTG GGC

GAT TGC GCG GAA ATT AAC GGT CAG GTA TTG CCG TTC CTC CAG CCG ATT CAA

CTT AGC GCG ATG GTG CTG GCA AAA AAT CTT CTC GGC AAT AAC ACG CCG CTG

AAA CTC CCG GCG ATG CTG GTG AAA ATC AAA ACG CCG GAA TTA CCG CTG CAT

CTG GCA GGC GAA ACC CAG CGT CAG GAT TTA CGC TGG CAA ATT AAT ACC GAA

CGC CAG GGA ATG GTG GCG CGC GGC GTT GAC GAT GCT GAC CAG CTT CGC GCC

TTT GTG GTC AGT GAG GAT CGG ATG AAA GAG GCA TTT GGA TTG TTG AAA ACA

TTG CCG ATG TAG

GTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGG

ACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAAC

ACGTT

TTA TCC GTT CTG GAC TTC ACC CGC TAA CCA ACG CGC CGC AGC AAT AAC CCC

CTG CCC CAG AGA CAA ACC GCC ATC ACC CGC CGG TAA ACT CTG TGG AAA GAG

CAA TGT GAA ATC AGC GAG ATA ATG CGC CAG ACG TGC ACG CAG CAA ACG GTT

ATG AAT AAC CCC GCC GCT AAA TAC CAG CGT AGT GAT ACC ACG CAT CGT GGC

CTG CTC ACG CAT CAA CGC GGC AAA ACC CTG CGC CAG CGC ATC ATG AAA CGC

CCA CGC GCG TTG ATT AAC CGG TGC CTG CCA GTT CAG CCA CTG CTG CCA GAA

AGT GGC GAG ATC CAG TTG ATT GTC CAC CCG CGG CAT TGT CAC CGG ATG CGT

CAC TCC GTG GCA TGA GGC TGC GAG CGC CTC CAG AGC ACA AGC CGC TTC ACC

TTC ATA ACT TAA CGT GGC TGG CGC ACA GCC CAG TGC CGC CGC CAC TGC ATC

GAA AAA ACG CCC ACA CGA TGA CGC CAG CGG CGC GTT AAT TCC ACG CTC AAT

GGC CCG CGC CAG CAC GCT CCA GTT TTG CTG TTG CAC ACT TGC TGT TTC AGA

GTA ATT CTG CCA CTC CGG CAC AAA GCG CAG GCA CTG CGC CAG CAG GTT TCG

CCA CGG CTG CTT CGC TGC CAA ATC GCC ACC CGG AAG CGC CAC TGC AGG CAA

GCC GCC CAG GTG CTC ACA TTC GCG ATA GTT CAC CCG CAG GCA CTC GCC GCC

CCA CAA AGC GCC GTT CTC CCC CAT ACC GAT ACC GTC GAG CGT CAA AGC AAT

GAC ATC ACC GCC ATC CAG CGG CCA CTG ATG CTC TGC CAG ACA CGC CGC TGC

ATG GGC ATG ATG ATG CAG TAC CGT TTG CGT CGG CAG ATT CAT TTC ACG CGC

CCA CTG GCT GGA GAC ATA GCC CGG ATG CGC GTC ATG CAC AAC GTA TTG CGG

GGT AAA ATC GTA GAT GTT TTG CAT CAG GCG TAA CGC TTC GCG CCA CTG CAT

CTG GAT GCC ATC GTC ACT TAA ATC GCC CAG ATG CTG ACT CAA CAC CGC TTG

TTC ACC GCG CAC CAG GCA GAA GGT ATT TTT CAG ATC CGC GCC GAG ACA CAG

CAC AGG CGG AAC ATT TTT AAA GCC CGG AGG CAA AGC CAG CGC ATC CGG CAC

ATA CCC CCG CGA ACG GCG CAG CAT TTC GCC GCT TTC GCG CAC CAC CGA ATC

ATC CAT CCG CTG CAC GAT GTC GCG GTT ATG TAT CAA GAA TCC GTC GGC AAT

GCC CTG CAA ATC CGC CAG CGC CTG TTC GTT GCT GAT AGC TGG TGG TTT ACC

GCT CAG GTT GCC GGA GGT CAT CAC CAG CGG GCA TTG CAG TTC CTG TAA CAG

CAA ATG CTG GAG CGG GTT CGC AGG CAA CAT TAC CCC GAC TTC GTT AAG GTC

AGG GGC GAT ATC ATC ACA AAG CTC AGG AAC GTA TTT TTT ATC CAC CAG CAC

AAT CGG CGC GGC GGG CGT GGT AAG CAA CTG GCG CGC AGC GTC TGG TAA ACC

GTC AGC CAC TGG CAA CAT GAC CGC CAG CGG TTT CGC CGG GCG ATG TTT GCG

CGC CCG AAG TGT CGC CAC CGC GTT ACT GTT ACG TGC ATC GCA GGC AAG ATG

AAA TCC GCC AAT CCC TTT GAT GGC GAC AAT TTT GCC CAT TTT TAA CTG TGC

GAT AGC TGC CTG TAA TGC CGC CTC TTG TTC CGC ATG TTC ACC ATG ACT TAC

CCA TTC AAG ATG CGG GCC ACA CTC CGG GCA GGC CAC CGG CTG GGC GTG GAA

GCG ACG ATC GAG CGG GTC ACG GTA CTC TTT GTC ACA GGC CGG ACA TAG CGG

AAA CGC CGC CAT CAC GGT AAA CGG GCG GTC GTA AGG CAT GGC GCG AAT AAT

GGT GAA ACG CGG GCC GCA GTG GGT ACA GTT GAT AAA CGG ATA ACG ATA ACG

CCG TTC GCC TGG GGT ATT CAT TTC GGC AAG GCA AGC AGG GCA AGT AGC GGC

ATC GGG AAC AAT TTG CGT ATT CAT GGT GCC GCC TGT GCT CTG GCG TAT AGT

GAA CTC GGT GGG CAG TTG TGA CCA GAT AAA CGG CTC ACG CTC GAC GCT ATC

AAT ACG CGC CAG CGG CGG GCA GTG CTG ATA CAA TTG AAC AAG AAA CGT TTC

CGG GTC TTC CCG CAG CCG GAC TTC TAC GCC ATC GCC GTC ATT ACA GAC ATC

GCC GTG AAG ATT TAA TTG CTG TGC CAG CTG CCA GAC AAA CGG ACG AAA ACC

GAC GCC CTG CAC TTT GCC ACG AAT ACG CAG TTG GAC ACC GCA AGA TGT GTT

TTT TGC CAT

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Please send questions and comments to Sophie.Bachellier@pasteur.fr.

ygbD - hypF sequence

Intergenic regions are in italics. The following repeats are coloured : BOCEs and boxC, BIMEs and PUs , IRUs, RSAs and 29 bp repeats.

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.