ybaQ - copA sequence

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.

ATG ATT CAG TAT GTT CTT GCA TCG CTA TTC ACA AGG AAG CAA CAG TTA AAA

ACC ATG AAA CAG GCA ACA AGA AAA CCG ACG ACA CCC GGA GAT ATT CTT CTC

TAT GAA TAT CTG GAA CCG CTC GAT TTG AAA ATC AAT GAG TTA GCA GAG TTG

CTG CAT GTT CAT CGT AAT AGC GTC AGT GCA CTG ATC AAT AAC AAT CGT AAA

CTC ACT ACT GAG ATG GCA TTT CGT CTG GCG AAA GTT TTT GAT ACC ACA GTC

GAT TTT TGG CTA AAC CTC CAG GCG GCG GTT GAT CTT TGG GAA GTT GAA AAC

AAC ATG CGC ACC CAG GAA GAA TTG GGA CGG ATT GAA ACA GTG GCT GAA TAT

TTG GCA CGC CGT GAA GAG CGT GCA AAA AAG GTC GCG TAA

GGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCG

AGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAAC

CGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGAC

GCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTT

ACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGC

AATGATGTAC

TTA TTC CTT CGG TTT AAA CCG CAG CAA CCG GTT GGC GTT ACT CAC TAC GGT

AAT CGA CGA GAG CGC CAT TGC CGC TCC GGC AAC TAC CGG GTT AAG CAG TGT

TCC AGT GAA CGG CCA CAA AAT ACC GGC GGC GAC CGG AAT ACC GAT ACT GTT

GTA GAT AAA CGC ACC GAG CAG GTT CTG CTT CAT GTT GTG CAG CGT TGC GCG

GGA AAT AGC GAG CGC ATC CGC AAC GCC CAT CAG GCT ATG GCG CAT CAG GGT

AAT CGC CGC GGT TTC AAT GGC AAC ATC ACT GCC GCC ACC CAT CGC AAT GCC

GAC ATC CGC CTG AGC CAG CGC TGG CGC GTC GTT AAT GCC GTC GCC CAC CAT

TGC CAC CTG ACG TCC TTC ACT TTG CAG ATG TTT GAT CGC TTC GGC TTT ACC

GTC CGG CAG CAC CCC GGC GAT CAC CTC ATC AAT CCC TGC TTC TTT GGC GAT

CGC ATT GGC GGT GGT TGG GTT ATC CCC GGT CAA CAT CAC CAG ACG ATA TCC

CGC TTT ATG CAG GCG TTG CAG CGC CGC CAC GCT ATC ACT ACG CAA CGG ATC

GCG TAC TGC CAG CAG GGC TAC CGC TTT CCC GTC AAC CGC CAG CAG CAC AGG

CGT TGC CCC TTG CGA TGC CTG AGC AGT AAT CTC CGC TTC GAT AGC TTT GGT

ACC AAC CTG TTG CTC ATT TAA CAG CGC CTG ATT GCC CAG CAA TAA CGC ATG

ACC TTC AGC TTC ACC GCT CAC GCC CAG CCC GCG CAA TGT GCG GAA ACC GTT

GAC CTG CGG TAG CTG CAT ATC ACC TGC TTT ATC GAG GAT CGC TCG TGC CAG

CGG ATG GCT GGA ACC TTG CTC CAG TGC CGC CGC CAG ACG CAA TGC CTG CGC

TTC ATC AAC ATC AGC AAA TGT TTT CAC TGC GAC AAC CTG CGG CTT CCC TTC

AGT CAG CGT CCC GGT TTT ATC GAA CAC TAC AGT GTC GAG TGT ACT GGC GCG

TTG CAG CGC GTC AGC GTC CCG CAC CAG CAC GCC AAA CTC AGC CGC CCG CCC

GAC GCC GGA AAT AAT CGA CAT CGG CGT CGC CAG CCC CAG CGC ACA CGG ACA

GGC AAT AAT CAG TAC CGT GGT GGC AAT CAC CAG GGT ATA GAC AAT CTG CGG

TGC CGG ACC AAA GAA ATA CCA GAT TGC CGC ACT GAC AAG CGC AAT AAC CAC

CAC TAC CGG CAC AAA TAC GGC TGA GAT TTT ATC CGC CAG CTG ACC GAT TTC

TGG CTT GCT GCT CTG GGC CTG GCG CAC CAT GCG AAT GAT TCG TGA CAG CGT

AGT ATG GCT GCC AAC CGC ACT GGC ACG AAA CAG CAC ACT GCC GTC CTG TAC

CAC TGT CCC GGC ATG GAC GCT ATC GCC TTC GCC TTT TTG CTG CGG GAT TGG

TTC GCC CGT CAG CAT CGC TTC ATC CAG CCA TGC TTC GCC CTG GGT AAT CTC

GCC ATC TAC CGG CAC GCG ATC GCC GGT CGT CAG GCG CAG CAA CAT ACC TGG

CTG CAC TTC TGC CAG AGG CAC GCT TTT TTC ACC TTC GTC AGT AAC CAG GCG

TGC CGT CGG CGG GGT TAA ATC GAG TAA CTT TTC CAG CGC CTT AGA AGA ACG

CTG GCG TGC GCG CGC TTC CAG CAT ATG GCC GAG ATT GAT CAG ACC GAT AAT

CAT CGC GCT GGC TTC GTA ATA AAG ATG TCG CGC TTC CAT CGG GAA CCA CTG

CGG CCA CAG GTT GAC GCT CAT CGA ATA GAG CCA CGC CAC GCC AGT ACC CAG

CGC CAC CAG CGT ATC CAT CGT CGC CGC ACC GTT CAG CAG GCT TTT CCA TGC

ACT GCG GTA AAA ATG GCC GCC GGC GAA AAC CAT CAC TGC CAG GGT TAT CAG

GCC GAT AAC CAA CCA CAG GCT GCG GTT GTC AGC GGT GAC CAT CAT GTT ATC

GCC GAT CAT CCC CCA GAC CAT CAC CGG GAT ACC CAC CGC CAG TGC GAC AAT

TGC CTG CCA GCG GAA GCG CTT CAT CGT AGC GAC GGC GGT TTC TTG CTG GCG

CTC GCG GCG TTT AGC GTC ATC TTC AAT CGC TTC CGC GCC GTA GCC CGC TTT

TTC CAC CGC CTG CAC TAA ATC TTG TGG GGA GGC ACT GCC CAT CAC CAG CGC

AGT ACG CTC CGC CAG GTT TAC CCG TGC CTG AGT GAC GCC CGG TAC GCT TTG

CAG CGC ATT TTG TAC GCG GGT GAC ACA GCT GGC GCA GCT CAT GCC GCT CAG

CAG CAA CTG CTG GCT GTC ATC GTC ATC GGC GGT CGC TGC CGG AAG CGC CTC

AGA AAC CGC TGT CAG TGC TTC CGA CGG GAT TGA TGA CTC CGC CAG CGG TTT

AGC CTT TGG GTG GCT TAC AGA TGC GTC ATA ACC CGC TTG TTT GAT GGT TTC

GAT CAG CTG TTC TGC ACT GGC AGT CCC GGT AAC GTG CGC TTC AGT GAT AGA

CAC ATC CGC CTG CTC AAC ATC CGG ACG CTG TTC AAG ACT TTC TTT CAC GCG

TTT AAC GCA GTG ACC GCA GGA CAG GCC GTC CAG GGT CAG GTC GAT AGT TTG

TGA CAT

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Please send questions and comments to Sophie.Bachellier@pasteur.fr.

ybaQ - copA sequence

Intergenic regions are in italics. The following repeats are coloured : BOCEs and boxC, BIMEs and PUs , IRUs, RSAs and 29 bp repeats.

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.