yajD - tsx sequence
Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.
| ATG | GCT | ATC | ATC | CCA | AAA | AAC | TAT | GCG | CGG | TTA | GAA | AGC | GGC | TAT | CGC | GAA | |
| AAA | GCA | TTA | AAA | ATC | TAT | CCG | TGG | GTC | TGC | GGT | CGC | TGT | TCC | CGC | GAG | TTT | |
| GTT | TAT | TCC | AAC | CTG | CGT | GAA | CTT | ACC | GTT | CAC | CAC | ATT | GAT | CAC | GAC | CAT | |
| ACC | AAT | AAC | CCG | GAA | GAT | GGC | AGT | AAC | TGG | GAA | TTG | TTG | TGT | CTC | TAT | TGC | |
| CAC | GAT | CAT | GAG | CAT | TCG | AAA | TAT | ACC | GAA | GCG | GAT | CAG | TAT | GGT | ACG | ACC | |
| GTT | ATC | GCA | GGG | GAA | GAT | GCG | CAG | AAA | GAT | GTC | GGT | GAA | GCG | AAG | TAC | AAC | |
| CCA | TTC | GCT | GAC | CTG | AAA | GCG | ATG | ATG | AAC | AAG | AAG | AAG | TGA |
|
| TTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATA |
| TTGAATTTACGTGCTTTTGTTGGCCGGACAAAGCGTTTACGCCGCATCCGGCATGAACAAA |
| GCACACGTTGTTAACAATCAGAAATGCCGGGAATAAATCCCGGCATTTTCATAA
|
| TCA | GAA | GTT | GTA | ACC | TAC | TAC | CAG | GTA | ACC | ACC | CCA | GCC | GGT | AGA | GCG | AAC | |
| GTT | GAA | GTT | GCC | GTT | GCC | GAA | GTT | CAG | TTC | TGC | ATC | GTC | GTT | CCA | CTG | ACC | |
| ACC | GTC | GTG | CCA | GTA | ACG | AGC | TAC | GAC | AGA | GTA | GTG | CCA | GTG | ATC | GTA | GTT | |
| CAG | AGC | CAG | AAT | ATG | GCT | GGA | AGC | GAT | AGA | GTT | ATT | AGT | ACG | GGT | CTT | AAT | |
| ACC | GTT | GAT | TGC | GTT | ACC | GCT | GTC | ATC | CCC | TAA | ATC | GGA | ACC | CCA | GTC | GAA | |
| GTT | GGT | GAA | GCC | GAT | GTA | GCT | CAG | CTG | ACC | GCC | CCA | CAG | ATC | GGT | AAT | CGG | |
| CAC | AAA | GTA | TTT | AAT | TTT | GAA | ACG | GTA | ACC | GTC | CCA | CTC | GTT | TTC | GTT | CGC | |
| TGC | GCC | ATA | GTT | CTG | CCA | CTG | GTA | TTT | CGC | ATA | GAC | GTT | CAT | GGA | CAG | GCT | |
| CAT | CGG | CAG | GCC | AGT | GTC | GAT | ATC | GGT | ACC | CAG | ACC | CAT | GTA | CCA | GGT | GCT | |
| CTG | GCG | ACC | ATC | TTT | ATT | ACG | ACC | CAT | GTC | GTA | AAT | GTA | GTT | GTT | CGC | GAA | |
| GTA | CCA | CTC | TTT | GAA | CGG | ACC | GAA | GCT | AAG | GTC | AGT | ATT | GGT | CAG | CTT | GTC | |
| GAT | GGA | GAA | ACG | TGG | TTC | GAT | TTC | CAT | AAA | CAG | CGG | AGA | ACC | GTG | GTT | CCA | |
| GAT | ACC | TTT | AGC | ATC | GGA | GTT | ACC | GCC | GAA | GAA | TAC | CGG | CGC | ATC | CGC | ATA | |
| ACC | ATA | GAA | GTC | GAA | CCA | GTC | TTT | TTT | AGC | GAA | TGC | TTC | GTA | CTC | AAG | GTA | |
| GGT | ATC | GTT | GCG | GAT | CTG | CGG | TCC | GAA | ACG | GGT | GTG | ATA | GCT | TCC | GAC | AAC | |
| GTT | AAC | GCT | CTG | GTG | CCA | CCA | GTC | GGA | AAG | ATA | CTG | CGG | TTT | GTC | GTT | TTC | |
| AGC | TGC | GTT | GAC | AGT | AAA | AGA | CGA | AGA | GAG | CGC | CAG | TAC | CGC | ACC | GGC | TGC | |
| CAG | TAA | TGT | TTT | TTT | CAT |
|
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Please send questions and comments to Sophie.Bachellier@pasteur.fr.