ubiF - o111 sequence
Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.
| ATG | ACA | AAT | CAA | CCA | ACG | GAA | ATT | GCC | ATT | GTC | GGC | GGA | GGA | ATG | GTC | GGC | |
| GGC | GCA | CTG | GCG | CTG | GGG | CTG | GCA | CAG | CAC | GGA | TTT | GCG | GTA | ACG | GTG | ATC | |
| GAG | CAC | GCA | GAA | CCA | GCG | CCG | TTT | GTC | GCT | GAT | AGC | CAA | CCG | GAC | GTG | CGG | |
| ATC | TCG | GCG | ATC | AGC | GCG | GCT | TCG | GTA | TCA | TTG | CTT | AAA | GGG | TTA | GGG | GTC | |
| TGG | GAT | GCA | GTA | CAG | GCT | ATG | CGT | TGC | CAT | CCT | TAC | CGC | AGA | CTG | GAA | ACG | |
| TGG | GAG | TGG | GAA | ACG | GCG | CAT | GTG | GTG | TTT | GAC | GCC | GCT | GAA | CTT | AAG | CTA | |
| CCG | CTG | CTT | GGC | TAT | ATG | GTG | GAA | AAC | ACT | GTC | CTG | CAA | CAG | GCG | TTG | TGG | |
| CAG | GCG | CTG | GAA | GCG | CAT | CCG | AAA | GTA | ACG | TTA | CGT | GTG | CCA | GGC | TCG | CTG | |
| ATT | GCG | CTG | CAT | CGC | CAT | GAT | GAT | CTT | CAG | GAG | CTG | GAG | CTG | AAA | GGC | GGT | |
| GAA | GTG | ATT | CGC | GCG | AAG | CTG | GTG | ATT | GGT | GCC | GAC | GGC | GCA | AAT | TCG | CAG | |
| GTG | CGG | CAG | ATG | GCG | GGA | ATT | GGC | GTT | CAT | GCA | TGG | CAG | TAT | GCG | CAG | TCG | |
| TGC | ATG | TTG | ATT | AGC | GTC | CAG | TGC | GAG | AAC | GAT | CCC | GGC | GAC | AGC | ACC | TGG | |
| CAG | CAA | TTT | ACT | CCG | GAC | GGA | CCG | CGT | GCG | TTT | CTG | CCG | TTG | TTT | GAT | AAC | |
| TGG | GCA | TCG | CTG | GTG | TGG | TAT | GAC | TCT | CCG | GCG | CGT | ATT | CGC | CAG | TTG | CAG | |
| AAT | ATG | AAT | ATG | GCA | CAG | CTC | CAG | GCG | GAA | ATC | GCG | AAG | CAT | TTC | CCG | TCG | |
| CGT | CTG | GGT | TAC | GTT | ACA | CCG | CTT | GCC | GCT | GGT | GCG | TTT | CCG | CTG | ACG | CGT | |
| CGC | CAT | GCG | TTG | CAG | TAC | GTG | CAG | CCA | GGG | CTT | GCG | CTG | GTG | GGC | GAT | GCC | |
| GCG | CAT | ACC | ATC | CAT | CCG | CTG | GCG | GGG | CAG | GGA | GTG | AAT | CTT | GGT | TAT | CGT | |
| GAT | GTC | GAT | GCC | CTG | ATT | GAT | GTT | CTG | GTC | AAC | GCC | CGC | AGC | TAC | GGC | GAA | |
| GCG | TGG | GCC | AGT | TAT | CCT | GTC | CTC | AAG | CGT | TAC | CAG | ATG | CGG | CGC | ATG | GCG | |
| GAT | AAC | TTC | ATT | ATG | CAA | AGC | GGT | ATG | GAT | CTG | TTT | TAT | GCC | GGA | TTC | AGC | |
| AAT | AAT | CTG | CCA | CCA | CTG | CGT | TTT | ATG | CGT | AAT | CTC | GGG | TTA | ATG | GCG | GCG | |
| GAG | CGT | GCT | GGC | GTG | TTG | AAA | CGT | CAG | GCG | CTG | AAA | TAT | GCG | TTA | GGG | TTG | |
| TAG |
|
| CCTTACAACATTGCCGGATGCGTGCCAACCGTAGGTCGGATAAGACGCGGCAGCGTCGCAT |
| CCGACATTGAAGGATAAGAC
|
| GTG | TCA | ACA | TCG | CAT | TCG | ACA | TTG | AAT | GAA | CGC | AGA | AAA | GCA | AAA | AGC | TCG | |
| CCG | AAG | CGA | GCT | TTT | TTA | ATG | TGG | CTG | GGG | TAC | GAG | GAT | TCG | AAC | CTC | GGA | |
| ATG | CCG | GAA | TCA | GAA | TCC | GGT | GCC | TTA | CCG | CTT | GGC | GAT | ACC | CCA | ACT | GGG | |
| TGC | ACT | TAC | AAG | GTA | AGC | GTC | TTG | AAT | AAA | TTG | GCT | GGG | GTA | CGA | GGA | TTC | |
| GAA | CCT | CGG | AAT | GCC | GGA | ATC | AGA | ATC | CGG | TGC | CTT | ACC | GCT | TGG | CGA | TAC | |
| CCC | AAC | AAA | TTG | GTT | TTG | AAT | TTG | CCG | AAC | ATA | TTC | GAT | ACA | TTC | AGA | ATT | |
| TGG | TGG | CTA | CGA | CGG | GAT | TCG | AAC | CTG | TGA |
|
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Please send questions and comments to Sophie.Bachellier@pasteur.fr.