rpoD - f168 sequence

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.

ATG GAG CAA AAC CCG CAG TCA CAG CTG AAA CTT CTT GTC ACC CGT GGT AAG

GAG CAA GGC TAT CTG ACC TAT GCC GAG GTC AAT GAC CAT CTG CCG GAA GAT

ATC GTC GAT TCA GAT CAG ATC GAA GAC ATC ATC CAA ATG ATC AAC GAC ATG

GGC ATT CAG GTG ATG GAA GAA GCA CCG GAT GCC GAT GAT CTG ATG CTG GCT

GAA AAC ACC GCG GAC GAA GAT GCT GCC GAA GCC GCC GCG CAG GTG CTT TCC

AGC GTG GAA TCT GAA ATC GGG CGC ACG ACT GAC CCG GTA CGC ATG TAC ATG

CGT GAA ATG GGC ACC GTT GAA CTG TTG ACC CGC GAA GGC GAA ATT GAC ATC

GCT AAG CGT ATT GAA GAC GGG ATC AAC CAG GTT CAA TGC TCC GTT GCT GAA

TAT CCG GAA GCG ATC ACC TAT CTG CTG GAA CAG TAC GAT CGT GTT GAA GCA

GAA GAA GCG CGT CTG TCC GAT CTG ATC ACC GGC TTT GTT GAC CCG AAC GCA

GAA GAA GAT CTG GCA CCT ACC GCC ACT CAC GTC GGT TCT GAG CTT TCC CAG

GAA GAT CTG GAC GAT GAC GAA GAT GAA GAC GAA GAA GAT GGC GAT GAC GAC

AGC GCC GAT GAT GAC AAC AGC ATC GAC CCG GAA CTG GCT CGC GAA AAA TTT

GCG GAA CTA CGC GCT CAG TAC GTT GTA ACG CGT GAC ACC ATC AAA GCG AAA

GGT CGC AGT CAC GCT ACC GCT CAG GAA GAG ATC CTG AAA CTG TCT GAA GTA

TTC AAA CAG TTC CGC CTG GTG CCG AAG CAG TTT GAC TAC CTG GTC AAC AGC

ATG CGC GTC ATG ATG GAC CGC GTT CGT ACG CAA GAA CGT CTG ATC ATG AAG

CTC TGC GTT GAG CAG TGC AAA ATG CCG AAG AAA AAC TTC ATT ACC CTG TTT

ACC GGC AAC GAA ACC AGC GAT ACC TGG TTC AAC GCG GCA ATT GCG ATG AAC

AAG CCG TGG TCG GAA AAA CTG CAC GAT GTC TCT GAA GAA GTG CAT CGC GCC

CTG CAA AAA CTG CAG CAG ATT GAA GAA GAA ACC GGC CTG ACC ATC GAG CAG

GTT AAA GAT ATC AAC CGT CGT ATG TCC ATC GGT GAA GCG AAA GCC CGC CGT

GCG AAG AAA GAG ATG GTT GAA GCG AAC TTA CGT CTG GTT ATT TCT ATC GCT

AAG AAA TAC ACC AAC CGT GGC TTG CAG TTC CTT GAC CTG ATT CAG GAA GGC

AAC ATC GGT CTG ATG AAA GCG GTT GAT AAA TTC GAA TAC CGC CGT GGT TAC

AAG TTC TCC ACC TAC GCA ACC TGG TGG ATC CGT CAG GCG ATC ACC CGC TCT

ATC GCG GAT CAG GCG CGC ACC ATC CGT ATT CCG GTG CAT ATG ATT GAG ACC

ATC AAC AAG CTC AAC CGT ATT TCT CGC CAG ATG CTG CAA GAG ATG GGC CGT

GAA CCG ACG CCG GAA GAA CTG GCT GAA CGT ATG CTG ATG CCG GAA GAC AAG

ATC CGC AAA GTG CTG AAG ATC GCC AAA GAG CCA ATC TCC ATG GAA ACG CCG

ATC GGT GAT GAT GAA GAT TCG CAT CTG GGG GAT TTC ATC GAG GAT ACC ACC

CTC GAG CTG CCG CTG GAT TCT GCG ACC ACC GAA AGC CTG CGT GCG GCA ACG

CAC GAC GTG CTG GCT GGC CTG ACC GCG CGT GAA GCA AAA GTT CTG CGT ATG

CGT TTC GGT ATC GAT ATG AAC ACC GAC TAC ACG CTG GAA GAA GTG GGT AAA

CAG TTC GAC GTT ACC CGC GAA CGT ATC CGT CAG ATC GAA GCG AAG GCG CTG

CGC AAA CTG CGT CAC CCG AGC CGT TCT GAA GTG CTG CGT AGC TTC CTG GAC

GAT TAA

TCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCAC

CTTTTCGGTGGCGTTTT

TTA TCG CCC ACG CAC TAC CAG CGC CTG GTC CAG CTC GCG ATA CGC TTC AAC

CAG TTT CTC CAG TGA AAC GCG ACT TAA ACC GCT GGG ATT TGG CAG CAC CCA

AAT CTG CGT CGA ACC AAT GGT GAG CGT TTG TTT CCC CCA CTG TGC ACC GCG

CTG GCT GAA TCC CTG TTC ATA TGC TTG TTT GCC CAG AAT CGC CAA CGC CTG

CGG CTG ATA ATC TTC AAT TTT TTC AAT CAG CTT ACG CCC GCC TGC GTG TAG

CTC CTG CTT TGA AAC TTC ATT GGC TTG CAC CGT TGG ACG GTC TAC CAG TTT

GGT GAC GCC ACA ACG ATA ATC CAG CAG ATG CTG TGC CTC CTG CGG CTT CAA

CTG ACG GTC GGT AAA CCC GGC CTG ATA TAT CAC CTT CCA GAA GCG ATT TGC

CGG ATG AGC AAA GGG AAA ACC AGT CCC GGC GGA TGA AAG CCC AGG GTT GAT

ACC GCA AAA CAC GAC CCG TAA CCC TGG AGC CAA AAT ATC CTC AAC CAT

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Please send questions and comments to Sophie.Bachellier@pasteur.fr.

rpoD - f168 sequence

Intergenic regions are in italics. The following repeats are coloured : BOCEs and boxC, BIMEs and PUs , IRUs, RSAs and 29 bp repeats.

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.