rep - gppA sequence

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.

ATG CGT CTA AAC CCC GGC CAA CAA CAA GCT GTC GAA TTC GTT ACC GGC CCC

TGC CTG GTG CTG GCG GGC GCG GGT TCC GGT AAA ACT CGT GTT ATC ACC AAT

AAA ATC GCC CAT CTG ATC CGC GGT TGC GGT TAT CAG GCG CGG CAC ATT GCG

GCG GTG ACC TTT ACT AAT AAA GCA GCG CGC GAG ATG AAA GAG CGT GTA GGG

CAG ACG CTG GGG CGC AAA GAG GCG CGT GGG CTG ATG ATC TCC ACT TTC CAT

ACG TTG GGG CTG GAT ATC ATC AAA CGC GAG TAT GCG GCG CTT GGG ATG AAA

GCG AAC TTC TCG TTG TTT GAC GAT ACC GAT CAG CTT GCT TTG CTT AAA GAG

TTG ACC GAG GGG CTG ATT GAA GAT GAC AAA GTT CTC CTG CAA CAA CTG ATT

TCG ACC ATC TCT AAC TGG AAG AAT GAT CTC AAA ACA CCG TCC CAG GCG GCA

GCA AGT GCG ATT GGC GAG CGG GAC CGT ATT TTT GCC CAT TGT TAT GGG CTG

TAT GAT GCA CAC CTG AAA GCC TGT AAC GTT CTC GAC TTC GAT GAT CTG ATT

TTA TTG CCG ACG TTG CTG CTG CAA GCC AAT GAA GAA GTC CGC AAG CGC TGG

CAG AAC AAA ATT CGC TAT CTG CTG GTG GAT GAG TAT CAG GAC ACC AAC ACC

AGC CAG TAT GAG CTG GTG AAA CTG CTG GTG GGC AGC CGC GCG CGC TTT ACC

GTG GTG GGT GAC GAT GAC CAG TCG ATC TAC TCC TGG CGC GGT GCA CGT CCG

CAA AAC CTG GTG CTG CTG AGT CAG GAT TTT CCG GCG CTG AAG GTG ATT AAG

CTT GAG CAG AAC TAT CGC TCT TCC GGG CGT ATT CTG AAA GCG GCG AAC ATC

CTG ATC GCC AAT AAC CCG CAC GTC TTT GAA AAG CGT CTG TTC TCC GAA CTG

GGT TAT GGC GCG GAG CTA AAA GTA TTA AGC GCG AAT AAC GAA GAA CAT GAG

GCT GAG CGC GTT ACT GGC GAG CTG ATC GCC CAT CAC TTC GTC AAT AAA ACG

CAG TAC AAA GAT TAC GCC ATT CTT TAT CGC GGT AAC CAT CAG TCG CGG GTG

TTT GAA AAA TTC CTG ATG CAA AAC CGC ATC CCG TAC AAA ATA TCT GGT GGT

ACG TCG TTT TTC TCT CGT CCT GAA ATC AAG GAC TTG CTG GCT TAT CTG CGC

GTG CTG ACT AAC CCG GAC GAT GAC AGC GCA TTT CTG CGT ATC GTT AAC ACG

CCG AAG CGA GAG ATT GGC CCG GCT ACG CTG AAA AAG CTG GGT GAG TGG GCG

ATG ACG CGC AAT AAA AGC ATG TTT ACC GCC AGC TTT GAT ATG GGC CTG AGT

CAG ACG CTT AGC GGA CGT GGT TAT GAA GCA TTG ACC CGC TTC ACT CAC TGG

TTG GCA GAA ATC CAG CGT CTG GCG GAG CGG GAG CCG ATT GCC GCG GTG CGT

GAT CTG ATC CAT GGC ATG GAT TAT GAA TCC TGG CTG TAC GAA ACA TCG CCC

AGC CCG AAA GCC GCC GAA ATG CGC ATG AAG AAC GTC AAC CAA CTG TTT AGC

TGG ATG ACG GAG ATG CTG GAA GGC AGT GAA CTG GAT GAG CCG ATG ACG CTC

ACC CAG GTG GTG ACG CGC TTT ACT TTG CGC GAC ATG ATG GAG CGT GGT GAG

AGT GAA GAA GAG CTG GAT CAG GTG CAA CTG ATG ACT CTC CAC GCG TCG AAA

GGG CTG GAG TTT CCT TAT GTC TAC ATG GTC GGT ATG GAA GAA GGG TTT TTG

CCG CAC CAG AGC AGC ATC GAT GAA GAT AAT ATC GAT GAG GAG CGG CGG CTG

GCC TAT GTC GGC ATT ACC CGC GCC CAG AAG GAA TTG ACC TTT ACG CTG TGT

AAA GAA CGC CGT CAG TAC GGC GAA CTG GTG CGC CCG GAG CCG AGC CGC TTT

TTG CTG GAG CTG CCG CAG GAT GAT CTG ATT TGG GAA CAG GAG CGC AAA GTG

GTC AGC GCC GAA GAA CGG ATG CAG AAA GGG CAA AGC CAT CTG GCG AAT CTG

AAA GCG ATG ATG GCG GCA AAA CGA GGG AAA TAA

TCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCA

TTA ATG CAC TTC CAG CGG CCA GTG GAC ATA GCT CTG CCA CTG GCT TTC CTG

AGC AAT AAT CTC TTT ACC CAG CGG ATG TTG GGT TAG CCA ACC TTG CGG AAG

CGT CAA GGT CAA CAG TTC ATG GTT AGC CTG TAA TGT CAT CTC TGG CAC GAG

ATC GTC ACG GCG ACG GCT GGC AAA AAT GAT GGC CAG GCG TAG TAA ACG GCA

GAG TTG TTC TGC GAG CCG CGG CGG TAC GGC ATT TTG CTG ATG CAG CGA TGA

GAG ATC GAC CGG ATT AGT CTG GTT GAG CAG TAG CGT CGC CAG CAA TTT TTT

CTG TGC GGG GGT AAA ACC GGG AAG ATC CAG ATT ACG CAC CAG ATA AGC AGC

GTG TTG CGG CGC TTG TTT GAA GTC AAC GCT CAG GCC GAT TTC ATG AAG CTG

ACA GGC GCT GAT GAG CAA ATC GCG GCT TAT TGC TTC AAG ATG CCA TTC GTT

TTC CAC CTG ATC GAA GAA GTT AGC CGC AAC TTT GGC TAC GCG CTG TGC CTG

ATC AAT ATC GAT CAT AAA GCG GCG TTG AAT ATT ACG CAG CGT ACG GCT GCG

AAT ATC CTG CTC GAC GGC CAG ATG CAA CAT GCC GTA GAC CAG GCC TTC ACG

CAG CGC ACC GCC CGC CAG GGT CAT ACA CTG AAT ATT CAG TTC GGT AAA AAT

GGC GAT CAG GAT CGC CAG ACC ACT CGG GAA CAC TAA CGC ACG TTC CAG CGT

CAG CCC GTC AAT CTC CAG TTC CTC CAG CCG ACC GCA ATG AAT GGC TCG CTG

TTT CAA TTG CTG CAA CTT TTC CAG GGT AAT GCG TTC ATC CAT CCC CTG TGC

CAT CAT GAT TTC CTG TAA CGC CTG CAC GGT GCC GGA AGC ACC AAC GCA CAC

TTT CCA GCC GTG ATA CCG TAA TTC ATC GGC AAC CGG ACG TAA CAC TTC GCG

TGC CGC TTT TTC TGC AGC ATC AAA ATT TTC CTG CCC CAG ATT ACG ATC GGC

AAA ATA GCG TTC CAG CCA GGT GAC GCA GCC CAT CGA CAG GCT GAA CAA CGA

GGT GGT TTG TGC ACC CGT GCC GGT TAC CAG TTC AGT ACT GGC TCC GCC TAT

ATC CAC CAC CAG GCG CTG ATC GGC ACC ACC AGT GGT GTG AGC AAC GCC CTG

ATA AAT CAG ACG TGC TTC CTC TTC ACC GCT GAT CAC CTG TAC CGG ACA ACC

GAG AAT TTC CTG CGC TTT GGC AAT AAA ATC ACC CGC ATT GAC GGC AAG GCG

TAA CCT CGC CGT AGC GAC AAC GCG AAT TTG CGA GGG AGG AAT ATC TTG CAG

ACG TTC AGC AAA CAG GCG CAA ACA TTG CCA ACC GCG CTC CAT TGC TTC ATT

GGA GAG GGC ATT TTC GCT ATT CAG GCC AGC AGC CAG ACG CAC TTT GCG TTT

TAT TCG CGT CAG CGT CTG GAT GCT TCC AGC CAC CTC GCG CAC AAC CAG CAT

ATG AAA ACT ATT CGA ACC GAG ATC AAT GGC TGC ATA CAG CGA CGA GGT GGA

ACC CAT

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Please send questions and comments to Sophie.Bachellier@pasteur.fr.

rep - gppA sequence

Intergenic regions are in italics. The following repeats are coloured : BOCEs and boxC, BIMEs and PUs , IRUs, RSAs and 29 bp repeats.

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.