proX - o88 sequence
Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.
| ATG | CGA | CAT | AGC | GTA | CTT | TTT | GCG | ACA | GCG | TTT | GCC | ACG | CTT | ATC | TCT | ACA | |
| CAA | ACT | TTT | GCT | GCC | GAT | CTG | CCG | GGC | AAA | GGC | ATT | ACT | GTT | AAT | CCA | GTT | |
| CAG | AGC | ACC | ATC | ACT | GAA | GAA | ACC | TTC | CAG | ACG | CTG | CTG | GTC | AGT | CGT | GCG | |
| CTG | GAG | AAA | TTA | GGT | TAT | ACC | GTC | AAC | AAA | CCC | AGC | GAA | GTA | GAT | TAC | AAC | |
| GTT | GGC | TAC | ACC | TCG | CTT | GCT | TCC | GGC | GAT | GCA | ACC | TTC | ACC | GCC | GTG | AAC | |
| TGG | ACG | CCA | CTG | CAT | GAC | AAC | ATG | TAC | GAA | GCT | GCC | GGT | GGC | GAT | AAG | AAA | |
| TTT | TAT | CGT | GAA | GGG | GTA | TTT | GTT | AAC | GGC | GCG | GCA | CAG | GGT | TAC | CTG | ATC | |
| GAT | AAG | AAA | ACC | GCC | GAC | CAG | TAC | AAA | ATC | ACC | AAC | ATC | GCA | CAA | CTG | AAA | |
| GAT | CCG | AAG | ATC | GCC | AAA | CTG | TTC | GAT | ACC | AAC | GGC | GAC | GGA | AAA | GCG | GAT | |
| TTA | ACC | GGT | TGT | AAC | CCT | GGC | TGG | GGC | TGC | GAA | GGT | GCG | ATC | AAC | CAC | CAG | |
| CTT | GCC | GCG | TAT | GAA | CTG | ACC | AAC | ACC | GTG | ACG | CAT | AAT | CAG | GGG | AAC | TAC | |
| GCA | GCG | ATG | ATG | GCC | GAC | ACC | ATC | AGT | CGC | TAC | AAA | GAG | GGC | AAA | CCG | GTG | |
| TTT | TAT | TAC | ACC | TGG | ACG | CCG | TAC | TGG | GTG | AGT | AAC | GAA | CTG | AAG | CCG | GGC | |
| AAA | GAT | GTC | GTC | TGG | TTG | CAG | GTG | CCG | TTC | TCC | GCA | CTG | CCG | GGC | GAT | AAA | |
| AAC | GCC | GAT | ACC | AAA | CTG | CCG | AAT | GGT | GCG | AAT | TAT | GGC | TTC | CCG | GTC | AGC | |
| ACC | ATG | CAT | ATC | GTT | GCC | AAC | AAA | GCC | TGG | GCC | GAG | AAA | AAC | CCG | GCA | GCA | |
| GCG | AAA | CTG | TTT | GCC | ATT | ATG | CAG | TTG | CCA | GTG | GCA | GAT | ATT | AAC | GCC | CAG | |
| AAC | GCC | ATT | ATG | CAT | GAC | GGC | AAA | GCC | TCA | GAA | GGC | GAT | ATT | CAG | GGA | CAC | |
| GTT | GAT | GGT | TGG | ATC | AAA | GCC | CAC | CAG | CAG | CAG | TTC | GAT | GGC | TGG | GTG | AAT | |
| GAG | GCG | CTG | GCA | GCG | CAG | AAG | TAA |
|
| TTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGAT |
| GCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTT |
| TCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAA |
| CAAAAATA
|
| ATG | ACT | AAA | CCT | AAT | CAT | GAG | CTT | AGC | CCG | GCG | CTG | ATC | GTG | CTG | ATG | TCT | |
| ATC | GCC | ACC | GGT | CTG | GCG | GTA | GCC | AGT | AAC | TAT | TAC | GCC | CAG | CCA | TTG | CTC | |
| GAC | ACC | ATC | GCG | CGT | AAC | TTT | TCC | CTT | TCC | GCC | AGT | TCG | GCA | GGC | TTT | ATT | |
| GTT | ACC | GCC | GCG | CAG | TTG | GGC | TAT | GCC | GCA | GGT | CTA | CTG | TTT | CTT | GTT | CCC | |
| CTC | GGT | GAT | ATG | TTT | GAA | CGC | CGC | CGC | CTG | ATT | GTC | TCG | ATG | ACC | TTA | CTG | |
| GCG | GCA | TGT | TGA |
|
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Please send questions and comments to Sophie.Bachellier@pasteur.fr.