Y. pestis phoH - orf23 sequence

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.

CTA TGA ATA AGC ATT TAA TGT TCG CTG ACA GAG TAC CGA ACG AAC ACA GTC

CTG TTT ATC AAA ACG GAT GAT GCC GAT CAT CTC ATC CTC AGT AAA ACG CTC

CAG TGC ATC GCT GAG ACC CGA TTT CAC GCC TCT AGG CAG ATC GCA TTG GGT

AAT ATC ACC ATT AAC GAT GAC CGT GAC ATT TTC ACC GAG GCG GGT CAG AAA

CAT CTT CAT TTG GCT GGC GGT TAC ATT TTG TGC CTC GTC GAG GAT CAC CAC

CGC ATT TTC AAA GGT ACG CCC GCG CAT ATA GGC GAA AGG CGC AAT CTC CAC

TTT ACC GAT TTC AGG TCG CAA GCA ATA TTG CAT AAA TGA CGA GCC CAG GCG

ACG CAG TAA GAT GTC ATA CAC CGG GCG GAA ATA AGG CGC AAA TTT CTC AGA

GAT ATC ACC GGG CAG AAA ACC CAG GTC TTC ATC TGC CTG TAG CAC AGG TCG

CGT GAC GAT GAT TCG ATC AAC TTC TTT ATG AAT TAA CGC TTC TGC TGC TTT

TGC AGC GCT GAT ATA GGT TTT ACC GCA CCC TGC TTC ACC GGT GGC GAA GAT

GAG CTG TTT ACT TTC TAT GGC TGA TAA GTA ATG ACC CTG AGC TTC CGT TCG

CGC CTG AAT AAC CGA GGT ATC ACG GCT ATC CCG CGC CAT ACC TAT GGA TTC

AAC ACC CCC CAT TTG TAC TAA CGA TGT CAC ACT TTC TTC CTC ACG TTG ACG

ATG ACT ACG TGA ATC ACG TCT AAT CAC GCG TTT CGC TTC ACG ACG CGC TTT

GAT CAC TGC TTT CTG TCT TCC CAT

TGTGGCACCTTACTGTTTGTTTCACCTACCGTAGCAGCCGTTGCTGGTACGATTATGTTTCA

CATACGGATGAGGTTTTGGCTTCCTTTGCAGCCAATAATAGCCAATGAAAAATGCGCATAGC

AATAAACACCAAAGCCGGGTATGGGCTTGGATGAAAACAGTATCGCAAGGGGAGTATTACGC

GCCATTAACGCAGAGAACAACCACAAAATATCAAAAGGAGATAATAAACGTACTGTAGGAAA

TTGAGTGCCGGAGAGGAAGCCCTCGTAACAACGAGTCGCTTGAGTCAATCTTTGATTTTGTT

TTAACAGCCCAATCACGGACTCTACCATTAGCAATCCCCGCAGTGATAACTCTATCCGCTAT

ACCCCAAATTGCATCTGCATTGGCTCTCTTCGTTCACCCTGGTCACTTGCTTATGTCAGCGC

CTGAGGATTCACTCCGTGGCCGTTTTTCTACAATTCGAACTATTTTAAGGTATACCAGCCTA

AACGTTGCACCGTGTGAAAAATACCGCCAGATGATTACAGTATAATGACACTGGCCAATTTC

GCGATTTTTGAGTGTAAAAAAATAATAACTTCACTTGCTCATTTTTTACACTCATTCCTTTT

TAACATGATGCTCCGCTATTAACGCCCCACCCTCTCCTTGCATGAAAAACGATAATGATTTC

GCCCTTACTTTTTTTCTTGGTTTCATCTGTAAAGGCGAAATATTTTTAATCTTTTAAAAAAA

TAAATAGCATTAGCTGTTAATGATATTCCAGA

TCA TGA GTG GCG GCC TCT TAG ATC TTG TAA GCG CAC TTT TTG CTT ACC TTG

GCT ATC AAA GTT TTC GGC CAT CAG CCA GTC CTT AAA TGC CTG CTT AAT TAA

TGG CCA ATC TTT ATC GAT AAT GGC ATA CCA GTT AGT GTC TCT ATT ACG TCC

TTT AGT GAC GAT AGC CTG CCG AAA TTG CCC TTC GTA CTG AAA ACC AAA ACG

GGC TGC TGC TGC ATT CGA TGA CTC ATT TAA GGA ATC ACA TTT CCA CTC ACA

GCG GCG ATA ACC TAA TTT ATC GAA GGC ATA GTG TAA TAG CAG ATA TAT TGC

TTC AGT CCC CGC AGT GTT ACG TTT TAA GCG GGG TGA CCA ATT AAC CGA ACC

AAT TTC AAT TAC GCC GTT TTT TTC ATC AAT GCG TTG TAA ACC AAC GGT ACC

CAA TGC ATG GCC TAA CTG AGG GTC AAC CGC CGT ATA ATG AAC AGC ATC ATT

TGC ATG GAT CAA TGT TTG CAG ATA ATG ATG GAA ATC ATC TTT ATT CTC AGG

ACG TTC ACA ATA AAA ATA TGT CCA ATC CTG CCC GTC ACT CAC CGC GTG ATA

AGC CTG ATA CAG TGA CGC TTC GTG CTT ATC AGC GCT CAC AGG TTC CAG AGA

ACA AAA ATG ACC GGG TAT AAT CTC CCT CTG AGG GGG CCG GGC CAA GTG CCA

ATA CGG TAA TTC CGC ACC AAT CGT TTG TCC AAA TGG GTT TTG TTT CAC GCT

ATG CTC CCG TTT TAT GTC ATC TGA AAA GTG ATA TCC ATT ATT GAG AAA TAA

CAG TAA CGC TGC AAA AAG CAT AGC AAT ATA TAT GAC GTT ATT ATA AAC AAC

AGC ACA CGT TGG GTA CTT CCC TTC CCA AAG CGC TCC CCG ATT CAT CTG ACC

CAA TAC GCC ATA ATA AGC TGC GTG TCC AAA CAT

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Please send questions and comments to Sophie.Bachellier@pasteur.fr.

Y. pestis phoH - orf23 sequence

Intergenic regions are in italics. The following repeats are coloured : BOCEs and boxC, BIMEs and PUs , IRUs, RSAs and 29 bp repeats.

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.