ompG - ycjW sequence
Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.
| ATG | AAA | AAG | TTA | TTA | CCC | TGT | ACC | GCA | CTG | GTG | ATG | TGT | GCG | GGA | ATG | GCC | |
| TGC | GCA | CAG | GCC | GAG | GAA | AGG | AAC | GAC | TGG | CAC | TTT | AAT | ATC | GGC | GCG | ATG | |
| TAC | GAA | ATA | GAA | AAC | GTC | GAG | GGT | TAT | GGC | GAA | GAT | ATG | GAT | GGG | CTG | GCG | |
| GAG | CCT | TCA | GTC | TAT | TTT | AAT | GCC | GCC | AAC | GGG | CCG | TGG | AGA | ATT | GCT | CTG | |
| GCC | TAT | TAT | CAG | GAA | GGG | CCG | GTA | GAT | TAT | AGC | GCG | GGT | AAA | CGT | GGA | ACG | |
| TGG | TTT | GAT | CGC | CCG | GAG | CTG | GAG | GTG | CAT | TAT | CAG | TTC | CTC | GAA | AAC | GAT | |
| GAT | TTC | AGT | TTC | GGC | CTG | ACC | GGC | GGT | TTC | CGT | AAT | TAT | GGT | TAT | CAC | TAC | |
| GTT | GAT | GAA | CCG | GGT | AAA | GAC | ACG | GCG | AAT | ATG | CAG | CGC | TGG | AAA | ATC | GCG | |
| CCA | GAC | TGG | GAT | GTG | AAA | CTG | ACT | GAC | GAT | TTA | CGT | TTC | AAC | GGT | TGG | TTG | |
| TCG | ATG | TAT | AAA | TTT | GCC | AAC | GAT | CTG | AAC | ACT | ACC | GGT | TAC | GCT | GAT | ACC | |
| CGT | GTC | GAA | ACG | GAA | ACA | GGT | CTG | CAA | TAT | ACC | TTC | AAC | GAA | ACG | GTT | GCC | |
| TTG | CGA | GTG | AAC | TAT | TAT | CTC | GAG | CGC | GGC | TTC | AAT | ATG | GAC | GAC | AGC | CGC | |
| AAT | AAC | GGT | GAG | TTT | TCC | ACG | CAA | GAA | ATT | CGC | GCC | TAT | TTG | CCG | CTG | ACG | |
| CTC | GGC | AAC | CAC | TCG | GTG | ACG | CCG | TAT | ACG | CGC | ATT | GGG | CTG | GAT | CGC | TGG | |
| AGT | AAC | TGG | GAC | TGG | CAG | GAT | GAT | ATT | GAA | CGT | GAA | GGC | CAT | GAT | TTT | AAC | |
| CGT | GTA | GGT | TTA | TTT | TAC | GGT | TAT | GAT | TTC | CAG | AAC | GGA | CTT | TCC | GTT | TCG | |
| CTG | GAA | TAC | GCG | TTT | GAG | TGG | CAG | GAT | CAC | GAC | GAA | GGC | GAC | AGT | GAT | AAA | |
| TTC | CAT | TAT | GCA | GGT | GTC | GGC | GTA | AAT | TAC | TCG | TTC | TGA |
|
| TAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGATCTATAAATGTAGGCCGG |
| ATAAGATGCGCTAGCATCGCATCTGGCATTCAGGCAAGGTAGCTGGTAT
|
| TTA | TTT | CAG | CGT | CAT | ATG | CGT | GGC | AAC | GGT | AAT | ATT | CTG | TGG | TGA | CGG | TTT | |
| TCC | AGA | AAT | TAA | GCG | GAA | TAA | TAA | CTC | GCA | GCT | TTG | TTG | ACC | TAA | CTC | CTG | |
| CGT | CGG | AAC | ATC | GAT | GCC | GCC | CGG | TGC | AGG | CGT | TAA | AAT | AAA | TGA | CAG | CGT | |
| TTC | ATT | GCT | ATA | ACC | CAC | CAC | CGC | TAA | CTG | CTG | CGG | AAT | AGC | AAT | ATT | TTT | |
| CTC | TGC | TGC | CGC | ACG | ATA | AAT | GCT | CAT | TAA | TTT | CAG | GCT | GTC | AGT | GGC | AAA | |
| CAC | CGC | CTC | AGG | CAA | CGG | TGA | CTG | GCT | TAA | TAA | TTG | CCG | TGC | TGC | TTT | TAA | |
| TGC | AGT | TTC | ATG | GGT | ATA | ACC | GCC | ATC | AAC | AAT | CCA | TTC | ATC | ACG | CAC | TGC | |
| AAT | ATT | ATG | CGC | AGC | CAG | GCT | CTG | CTT | ATA | ACC | ATT | AAC | GCG | ATC | AAC | CGA | |
| AAC | ATG | GAC | ATC | AAG | CGG | AGC | ATG | CAG | GCA | GGC | AAT | ATT | TTG | ATG | CCC | ACT | |
| TTC | AAT | TAA | TGC | ATC | GGT | CAA | CGC | AAT | GCT | GTC | GCC | AAA | ATT | ATC | GGT | ATC | |
| GAC | AGA | ATA | AAC | ATG | GGC | ATA | TTG | ACC | TTC | AAC | TTT | GCC | AAT | CAC | CAC | CAC | |
| CGG | AAT | ATC | ATA | TTT | ATC | GAG | TTG | GGC | AAA | AAA | TGA | CTC | ATC | CGC | TGG | CGA | |
| ACT | GAG | CAT | AAT | AAT | GCC | TTT | AAT | CAT | TTT | CTG | CTT | AAT | TTT | GCT | TTC | GCA | |
| TTT | TTG | CAG | ATC | TTC | TGC | CGG | ATT | GTG | CGA | CGT | TTG | TAA | TAT | CAC | GTC | GAA | |
| ACC | TTC | TTC | TTC | AGC | TTT | GGC | GGT | GAT | GGC | ATG | CAA | AAC | TTC | AGA | GAA | AAA | |
| CGG | ATT | ACC | CGC | CGT | AGT | TTT | GGT | CGA | ACG | GGT | AGA | AAT | CAC | CAT | AAT | GGC | |
| ATC | AAA | ACC | CGA | AGA | GGT | CAG | CGC | GCG | GGC | CAG | CTT | GTT | TGG | CTG | ATA | CTG | |
| TAA | TTC | TTC | AAT | GGC | CCG | TAA | CAC | TTT | TTC | GCG | CGC | TTC | CGG | GGA | GAT | ATT | |
| AGT | TTG | CTT | ATT | CAG | CAC | GCG | TGA | TAC | GGT | GGA | TTT | TGA | TAC | GCC | TGC | AAC | |
| CCT | GGC | AAT | ATC | ATA | AAT | AGT | AGG | GGA | CAT |
|
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Please send questions and comments to Sophie.Bachellier@pasteur.fr.