o169 - f456 sequence
Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.
| ATG | AAG | GGA | GAG | GAA | AAG | ATG | CCA | TCT | TTC | GAT | ATT | GTC | TCT | GAA | GTT | GAT | |
| CTT | CAG | GAA | GCA | CGT | AAC | GCG | GTC | GAT | AAC | GCG | AGC | CGC | GAA | GTG | GAG | TCC | |
| CGT | TTT | GAC | TTC | CGT | AAC | GTT | GAA | GCC | TCA | TTT | GAG | CTG | AAC | GAC | GCC | AGC | |
| AAA | ACC | ATC | AAA | GTG | TTG | AGC | GAG | TCC | GAT | TTC | CAG | GTC | AAT | CAG | TTG | CTG | |
| GAT | ATT | CTG | CGT | GCC | AAG | CTG | CTG | AAG | CGC | GGC | ATT | GAA | GGC | AGT | TCG | CTG | |
| GAT | GTA | CCG | GAG | AAT | ATC | GTT | CAT | AGC | GGT | AAA | ACC | TGG | TTT | GTG | GAA | GCG | |
| AAA | CTG | AAA | CAG | GGC | ATT | GAG | AGC | GCG | ACC | CAG | AAG | AAA | ATC | GTC | AAG | ATG | |
| ATC | AAA | GAC | AGC | AAA | CTG | AAA | GTG | CAG | GCG | CAA | ATT | CAG | GGC | GAT | GAA | ATC | |
| CGC | GTA | ACG | GGC | AAA | TCT | CGT | GAT | GAT | TTG | CAG | GCT | GTC | ATG | GCG | ATG | GTA | |
| CGT | GGT | GGC | GAT | CTC | GGT | CAG | CCG | TTC | CAG | TTC | AAA | AAC | TTC | CGC | GAT | TAA |
|
| TCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAA |
| AGGTTTGTAATTCAGAAACTTTGTAGGCCTGATAAGCGTAGCGCAGCAGGCAATTCGCCGC |
| GTTTT
|
| TTA | TGC | CTG | ACG | AAT | TGC | CTG | TTC | TAT | CTC | AAA | GCG | ATT | CGT | CAC | TTT | GCT | |
| GTC | GAT | TTT | CAC | ATA | AGC | TGA | ATG | TTC | TTC | TTC | TGC | AAT | CAA | CAC | TTC | TTT | |
| GAT | GCC | TTC | AGT | TTC | TAG | CAA | ACG | CAC | TTT | TAA | CGC | CTC | GTT | TGC | GGC | AAT | |
| GTT | CGC | CGG | GAT | TTC | AAT | GCG | CAA | ACT | GCT | GAC | ATA | CGG | CGG | TTC | TTT | CAT | |
| GGT | ACT | GGC | GAC | TGT | CAG | CCA | CAC | TGC | GGC | CAG | CAT | TGC | GCC | AGC | GAG | AAA | |
| TAC | CCC | CTG | ACC | GTC | AAA | CAT | GCC | GTT | AAT | CCA | GCC | GCC | CAG | CGA | ACC | GCC | |
| AAT | CGC | CAC | GCC | AAG | AAA | CTG | GCT | GGT | GGA | GTA | AAC | ACC | CAT | CGC | CGT | ACC | |
| TTT | GTA | ACC | TGC | TGG | CGA | CTC | TTT | ACT | GAT | AAG | TGA | GGG | CAG | GAG | GGC | TTC | |
| CAT | CAA | ATT | AAA | CGC | CAC | AAA | GAA | AAG | CTG | CAC | GCC | GAC | CAC | CAG | TTG | CCA | |
| GAA | CTG | CGT | TTG | CGC | GTT | CCA | CAA | CAC | AAT | TTC | CGC | AAC | CAC | GAT | CAA | CCC | |
| GAC | GCA | GAA | GAC | AAA | GAC | TTG | CTT | CAT | TTT | GCG | CTT | AAC | TTC | AGC | GTA | GAT | |
| AAT | GAA | AGG | CAC | GAC | CGA | GCC | AAA | GGC | GAT | TAG | CAT | TGT | CGC | CAG | ATA | GAC | |
| CTT | CCA | GTG | TTC | AGC | CGC | CGG | GAA | CCC | TGC | ATC | AGC | CAG | TTG | TCC | GGG | CAG | |
| GGC | AAC | AAA | CGT | CGA | CAT | CAG | CAA | AAT | ATG | CAG | ACA | CAT | AAT | GCC | AAA | GTT | |
| GAG | TTT | CAG | CAG | CCG | CGG | TTC | CGC | CAG | CAC | TTT | ACT | GAA | ACT | GCC | TTT | CAC | |
| CAT | TCC | GGA | CTC | ACG | ATT | AAG | TAC | GTG | AGT | GCT | ACT | GTT | GGG | CAC | AAC | CCA | |
| AAT | GGT | CAA | CGC | AAT | GCC | GGT | CGT | TGC | CAG | AAT | AGC | GAT | CAT | CCA | GAA | CAG | |
| CGC | GTG | CAG | CCC | AAG | TTT | GTG | AGT | GAT | GAT | CGG | GCC | AAG | CAC | CAT | CGC | AAT | |
| GGC | AAA | GGT | AAT | GCC | AAA | GCT | CAC | GCC | GAT | AAA | CGC | CAT | CGC | TTT | GGT | GCG | |
| GTT | TTG | TTC | GCG | CGT | GAG | ATC | GGA | AAG | CAG | CGC | CAT | AAC | GGC | GGC | GGC | AAT | |
| TGC | TCC | AGA | GCC | TTG | TAG | CGC | CCG | GCC | CAG | AAT | AAT | TCC | CCA | GAT | GGA | GTC | |
| GGA | AAG | CGC | AGC | GAT | AAC | GCT | ACC | GGC | GGC | AAA | CAC | CGC | CAG | CCC | ACC | GAC | |
| AAT | TAA | TGG | TTT | GCG | ACC | AAT | GCG | GTC | GGA | AAG | CAG | GCC | AAA | CGG | AAT | CTG | |
| AAA | AAC | GGC | CTG | AGT | CAG | ACC | ATA | AAT | ACC | AAT | GGC | AAT | ACC | GAT | TAA | TGC | |
| TTC | GCT | GGC | ACC | TTG | CAG | AGC | CAT | GCC | GTA | CGT | GGT | CAG | AAC | CGG | CAG | AAC | |
| CAT | AAA | CAT | GCC | CAG | CAT | GCG | CAA | CGA | GAA | TAC | GGT | CCC | TAA | ACC | CCA | GGT | |
| CGC | GCG | CCT | CTC | ACC | TGG | CGT | CAT | TTT | ATA | ATC | GTT | CAT | TAC | CAC |
|
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Please send questions and comments to Sophie.Bachellier@pasteur.fr.