mrr - yjiA sequence
Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.
| ATG | ACG | GTT | CCT | ACC | TAT | GAC | AAA | TTT | ATT | GAA | CCT | GTT | CTG | CGT | TAT | CTG | |
| GCA | ACA | AAA | CCG | GAA | GGT | GCA | GCC | GCG | CGT | GAT | GTT | CAT | GAG | GCT | GCC | GCG | |
| GAT | GCA | TTA | GGA | CTG | GAT | GAC | AGC | CAG | CGA | GCG | AAA | GTC | ATT | ACC | AGC | GGA | |
| CAA | CTT | GTT | TAT | AAA | AAT | CGT | GCA | GGC | TGG | GCG | CAT | GAC | CGT | TTA | AAA | CGT | |
| GCC | GGG | TTG | TCG | CAA | AGT | TTG | TCG | CGT | GGC | AAA | TGG | TGC | CTG | ACT | CCT | GCG | |
| GGT | TTT | GAC | TGG | GTT | GCG | TCT | CAT | CCC | CAG | CCA | ATG | ACG | GAG | CAG | GAG | ACG | |
| AAC | CAT | CTG | GCC | TTC | GCT | TTT | GTG | AAT | GTC | AAA | CTT | AAG | TCA | CGG | CCG | GAT | |
| GCC | GTC | GAT | TTA | GAT | CCG | AAA | GCC | GAC | TCT | CCC | GAT | CAT | GAA | GAA | CTT | GCA | |
| AAG | AGC | AGC | CCG | GAC | GAT | CGG | TTA | GAT | CAG | GCG | CTA | AAA | GAG | CTT | CGT | GAT | |
| GCG | GTG | GCT | GAT | GAG | GTT | CTG | GAA | AAC | TTA | TTG | CAG | GTT | TCT | CCT | TCG | CGC | |
| TTT | GAA | GTC | ATT | GTT | CTG | GAT | GTT | TTG | CAT | CGC | CTG | GGG | TAT | GGC | GGC | CAC | |
| CGT | GAT | GAT | TTG | CAG | CGT | GTT | GGC | GGT | ACT | GGA | GAT | GGT | GGC | ATC | GAT | GGT | |
| GTG | ATA | TCG | CTT | GAT | AAA | CTT | GGC | CTG | GAG | AAA | GTT | TAT | GTT | CAG | GCA | AAA | |
| CGT | TGG | CAG | AAT | ACT | GTA | GGC | AGG | CCA | GAA | TTA | CAG | GCA | TTT | TAC | GGC | GCA | |
| CTG | GCT | GGG | CAA | AAA | GCG | AAA | CGT | GGG | GTG | TTT | ATT | ACC | ACT | TCT | GGA | TTT | |
| ACT | TCT | CAG | GCG | CGT | GAC | TTT | GCC | CAA | TCC | GTC | GAG | GGT | ATG | GTG | TTG | GTT | |
| GAT | GGG | GAA | CGC | CTG | GTG | CAC | TTA | ATG | ATC | GAA | AAC | GAA | GTA | GGG | GTT | TCT | |
| TCA | CGT | TTG | TTG | AAG | GTG | CCG | AAA | CTG | GAT | ATG | GAC | TAT | TTT | GAG | TGA |
|
| AATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCC
|
| TTA | CTT | CCT | CAA | CCC | CGC | AAA | CGC | AGC | CCG | AAT | CTC | TTC | CTC | CGG | CAG | CTG | |
| GAT | CCC | GAT | AAA | CAC | CAT | CGT | GCT | ATG | CGG | TTT | TTC | ATC | GCC | CCA | CGG | CCT | |
| GTC | CCA | GTC | GGC | GCT | GTA | GAG | GCG | CTG | GAC | GCC | CTG | GAA | CAG | CAG | GCG | GTT | |
| AGG | TTC | GCC | GTC | AAT | CCA | CAG | CAT | CCC | TTT | GTA | ACG | TAG | CAG | TTT | ATC | CGC | |
| CGA | CTC | CAG | CAG | CAG | GTT | TTC | CAT | CAC | GCG | GGA | AAC | TTC | GCT | GAT | ATC | TAC | |
| CGG | GTA | ATC | CAG | TTC | CAC | CAC | AAT | CGA | CGA | AAT | ATC | GTT | TTG | TTT | ATC | TGC | |
| GAT | AAA | GTG | GAA | ACG | CGG | TTT | GGT | GCT | GAC | GAC | GTT | TTC | TTC | CAG | CAT | AAA | |
| ACC | GTT | GGT | GTT | GAA | CAG | CAG | GCC | CAG | ATC | GAT | GTC | GCC | GTG | GGT | GAC | GGT | |
| GTA | GAC | CGG | TGC | GCG | GGC | GTT | GAT | GCG | CGC | CAG | GCG | TTC | ATG | CAG | TTT | TTC | |
| TGC | TTC | GCC | TGC | GAC | GTC | GGT | TTT | GGT | CAG | CAG | AAT | GCG | GTC | GGC | GTA | GCC | |
| AAC | CTG | TGA | CTG | GGC | GAT | GGT | GAA | CTG | GTT | CAT | CTG | CTC | ATC | GGC | ATG | TAC | |
| CGC | ATC | CAC | CAG | CGC | AAT | CAC | GCC | GTC | CAG | CAG | ATA | ACG | CTG | GCA | TAA | AAC | |
| TTC | ATG | GGA | GAA | AAA | GGT | CTG | AAT | AAT | CGG | GCC | GGG | ATC | GGC | CAT | GCC | GGT | |
| GCA | TTC | AAT | GAC | CAG | ACG | GTC | GAA | CTG | AAT | ATT | GCC | CTT | GTC | GAG | ATT | GTC | |
| CAG | CAG | GTC | GAG | TAG | CGC | GTC | CTC | CAG | CTC | GTT | GGA | GCG | CGA | ACA | ACA | GAT | |
| GCA | GCC | GTT | GGT | CAG | CGT | TTT | GAT | CTG | CGT | GGC | GCG | GTC | GCC | AAT | CAG | TTG | |
| ATC | ATC | AAC | AGA | GAC | TTC | GCC | GAA | TTC | GTT | TTC | AAT | CAC |
|
Back to the table of contents
Please send questions and comments to Sophie.Bachellier@pasteur.fr.