Y. enterocolitica irp6 - ybtA sequence

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.

TTA TTG TCT TTC ATT TTC CAC CAC CTC TTC CTG TGT TCC ACC CGG CAC CCA

ATG CTG CGC CTG CTG ATA GTG TTG CCA GAG CCG TTG ATA CAG GCC GCC CTG

CGC CAA CAG TTG CGT ATG GTT CCC CAT TTC CCT GAG CTG TCC GTC GGA AAA

CAG CAA TAT CAC ATC GGC CTG AGT CAC CAT TGA GAG ACG ATG CGC GAC CAT

GAT GAC CGT CCG GCC GCG CAT GGC CGC CGC GAG CGC CTT GAT AAG CGC CGC

TTC GTT TTC CGG GTC AGC AAA CGC CGT CGC CTC ATC GAG CAC CAG GAT GGG

ACG ATC CTG CAA AAT CGC CCT GGC GAT AGT GAT GCG CTG CCG CTG GCC GCC

GGA GAG AAA TAC CCC ACG TTC CCC GAC TCG CGT GTT GTA ACC TTC TGG CAG

CGC GCT AAT AAA ATC ATG GGC CTG CGC CAC TCT GGC CGC CGC TAT TAC CGC

CTC CAG CGG CGT ATC CGG CGC GCC CAG ACG AAT GTT ATT GGC TAT CAT GTC

GGC AAA AAG GAA GTT GTC CTG AAA CAC AAA TGA GAG TTG CTT CAT CAG GGT

GTC CGT CTG CAT ATC GCG CAG ATC CAC GCC GCC AAT ACG GAT ATG GCC TTT

GTC CGG GTC GGC GTA ACG CAG CAG CAA GCG CGC TAC GGT GCT TTT TCC GGC

GCC GCT TGG CCC GAC CAG CGC CAC AAT TTG CCC GGC AGG CAC ATG AAA GCT

CAC CTC CTG CAA CGC GGC GCC AGT ACG CGC TTG CGG ATA ATG AAA GCT CAC

CTG CTC AAA GGT AAT GCT CGC CTC TTG CGG CTG CTG GTC AGA CTG CGG CAG

CGA TAA CTC CGG CAT CGC GAG AAC CTG ATA AAT ACG CTG AAT GCT TAA ACG

CGT TTG CGC GAC CAG GTT ATT GAG CAT CAT CAT TGG CAT TAC GGC TTC GGC

CAT TCC GCT GCC CAG CAG TAA AAC GGC CAC CCA CGC GAT AAA ATC GAG ACT

GCC ATA GTG CAA CAG GCC GTA TCC CGA CCA GAT CAG GAC AAA CAG GGT CGG

GAG AGG ATT CAG AAT CGA GAA GGA AAA ACG CGC TGA AAA ACC GGC TTT GCG

ATA CCA GGT TTT GAG CAC ATC GAC CCA CTC TTC AAG GGC GCG TGG ATA ACG

CAA AAA ACT GGT ACT GCC GCT ATC AAA CGT TCT CAC CAC GGG CAT GGC CTG

CAC GAA CTC AAT AAC CGC CGC ACT GAC CTG CTC GCG CGC CTT ATG ATA ACG

CTG AGC CAT ATC TTC CGA GCG CTG GCG GGC GAG CAC GAG AAC AAC CGA TCC

AAA CGC CAG TAC CCC CAA CGT CGC GAT TGC CAG CCG CCA GTC CAG CCA GAA

CAA GAT AAC GAT TGT CGC CAG CGG CAT GAT GAT CGC GCG GGC ATA GAG TGG

CGT GCT GTC AGC CAC AAA GAT ATG TAA CGA CTT CAC GTC ATC CAG CAT CAC

TTT CGC CAC TGA CCC GCT ACC CAT TTG CTG TAA CAC GCC AGG CGG AAG CTG

CAA TGC TTT ACG GGC TAA CCT ACT GCG CAT AAT GTT CTC CAG ATG AAA AGC

CGC GTA ATG AGA GGT ATT GAA CGC CTG CAA GCG CAG AAC AAA AGT TAA GAC

CAC GCA GCC GAT CAC GCC GCC CAG CAG CCA GAC CGG AAT AGT GTC AGG CGT

CGC GCG AAT GTC GCG CAG GCT CCA CGC CAG AAA AAG GAG CGC CCC CAG GCT

GGT TAA TGC CGC CAG CCC CGC CAG CGC CAT AGC TAA AAT AAC CTT CCT GCG

AAC CGG TTT AAT CAC CTG CCA GAG AGG AAA TCG GGA CAT CGA TTC AGT ATT

GGA TGA TTG AGA TAA CAT

GGGAGTAACTGAATTTCCTGATAAATTTTTACGGACACCAAAAGCGACAATTCAGGGTGGCG

TTCTGAGAATTAATGTGAATAATAACCATTATCAATAACTCATCTACCCCATTCGGTTCTAT

TTATACCCTAAATAGTTCGAGTTGCAGGAAGGCGGTAAGCGAGGGAAGCCCTAGGAACTTAC

AGAAGTAAGTGACTGGGGTGAGTGAGCGCAGCCAACGCACATGCAACTTGAAATATGACGGG

TATATGCACGCATTGGTCTAAGCCACAGGGAGATAACCAAGTC

ATG ACG GAG TCA CCG CAA ACG CAA TCC GAA ATC TCT ATT AAC CAG TTG GTG

GTC GGG AAA CCT GCA AAC GAT GGC AAT ATT CCT GCT CAG TGT GAA CTG CTG

CGC TGT TCG TTG CAG GAA GGT ATG GAT ATT TTG CTC TGG AGG GGC CAT TTT

GCG CGG CCT GAG ACG TTG CAG CTA CAC GAC GAT CTG GGC AGG ATT AAC TTC

TCG TGC ATC CTG GAA GGC ACA TCG CGC TTT GCG ATT CAG GGA CTC AGA CGC

CGC ACC GAC TGG GAG CTT GCG CGC AAT CGC CAT TAC ATT ACC CAT ACG CCA

GAC TGC CGT GGC AGC GCC TCC TAT TGT GGC CGA TTC GAG AGC ATT ACC CTC

TCC TTC AGC CCT GAA ACT CTC GCG CTG TGG GTG CCG GAT ATT AGC GCG GTC

ATT AAG AAT AAG ATC GAT TCC CAC TGC TGT TGC CTG CAG CAG CGT TGT AAT

GCT GAA ACC CAT TTA ACG GCT CAG GCT TTG CGT CAC GCG CTG ATG CGC ATG

CAC GGC GGC TTC AGC CAT GAA CAA AAG CCA TCG ACG CTA TGG TTG CAG GGG

CAA AGT CTG GTC ATG CTC AGT CTG GTG CTG GAT GAA CAT CGC GAA GAC GCC

AGT TGC CTC TCC TGC CAC TTC AAC CCG ATG GAA CGT CAG AAA CTG CTG CGG

GCG AAG GAT CTG CTG CTG GCT GAT CTG ACG CAA GCG CCG GGC GTC GCG GAG

CTG GCC AGA GAG TCC GGT CTG AGC GTT CTC AAA ATT AAG CGA GGC TTC CGC

GTT CTG TTC AAC AAC AGC GTC TAT GGC CTG TTT CAG GCT GAA CGA ATG CAG

GAA GCC AGA AGA CGC CTG GCT AAC GGC AAT ACC TCC GTC ATG ACG GTG GCG

GCC GAT CTG GGC TAT GCC AAC GCC AGT CAT TTC TCT GCC GCC TTC CAG AAA

CAG TTT GGC GTA ACC CCT TCG ACC TTT AAA CGC GTG ATG TAA

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Please send questions and comments to Sophie.Bachellier@pasteur.fr.

Y. enterocolitica irp6 - ybtA sequence

Intergenic regions are in italics. The following repeats are coloured : BOCEs and boxC, BIMEs and PUs , IRUs, RSAs and 29 bp repeats.

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.