gmhA - yafJ sequence
Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.
| ATG | TAC | CAG | GAT | CTT | ATT | CGT | AAC | GAA | CTG | AAC | GAA | GCG | GCG | GAA | ACG | CTG | |
| GCT | AAC | TTT | TTA | AAA | GAT | GAC | GCC | AAT | ATT | CAC | GCC | ATT | CAG | CGC | GCG | GCG | |
| GTC | CTG | TTA | GCA | GAC | AGC | TTT | AAA | GCC | GGT | GGC | AAA | GTG | CTT | TCC | TGC | GGC | |
| AAC | GGC | GGT | TCC | CAT | TGC | GAC | GCT | ATG | CAC | TTT | GCC | GAA | GAG | TTG | ACC | GGT | |
| CGC | TAC | CGT | GAA | AAC | CGT | CCG | GGC | TAC | CCG | GCG | ATT | GCT | ATT | TCT | GAC | GTT | |
| AGT | CAT | ATT | TCC | TGC | GTC | GGT | AAT | GAT | TTC | GGT | TTC | AAT | GAT | ATT | TTC | TCC | |
| CGC | TAC | GTT | GAA | GCG | GTA | GGT | CGC | GAA | GGC | GAT | GTA | CTG | CTG | GGG | ATC | TCC | |
| ACC | TCC | GGT | AAC | TCT | GCA | AAC | GTG | ATC | AAA | GCG | ATC | GCA | GCG | GCG | CGT | GAG | |
| AAG | GGA | ATG | AAA | GTG | ATC | ACC | CTG | ACC | GGT | AAA | GAC | GGC | GGC | AAA | ATG | GCT | |
| GGC | ACG | GCG | GAT | ATC | GAA | ATT | CGC | GTA | CCG | CAC | TTT | GGT | TAT | GCC | GAC | CGC | |
| ATT | CAG | GAG | ATT | CAC | ATT | AAA | GTG | ATC | CAT | ATC | CTG | ATC | CAG | TTG | ATT | GAA | |
| AAA | GAG | ATG | GTT | AAG | TAA |
|
| GTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGA |
| TGCGACGCTGACGCGTCTTATCATGCCTACAAATCTGTACGCGAACCGTAGGCCGAATAAT |
| GCGTTCACGCCGCATCCGACCTGAAAATTCTTAAATCAATCTTCGCCGGGGGCCATGCGCT |
| CCCGCTGTTGTGGAGGTTACCC
|
| ATG | TGC | GAA | TTG | CTC | GGG | ATG | AGC | GCC | AAC | GTC | CCT | ACC | GAT | ATC | TGC | TTT | |
| AGT | TTC | ACC | GGG | CTT | GTA | CAG | CGT | GGT | GGT | GGA | ACC | GGG | CCA | CAT | AAA | GAT | |
| GGC | TGG | GGC | ATT | ACC | TTT | TAC | GAA | GGT | AAA | GGC | TGT | CGC | ACA | TTT | AAA | GAT | |
| CCA | CAA | CCC | AGC | TTT | AAT | TCC | CCC | ATC | GCC | AAA | CTT | GTC | CAG | GAC | TAC | CCG | |
| ATA | AAA | TCC | TGT | TCG | GTG | GTG | GCT | CAT | ATT | CGC | CAG | GCT | AAT | CGG | GGC | GAG | |
| GTG | GCG | CTG | GAA | AAT | ACT | CAC | CCA | TTT | ACC | CGC | GAG | TTA | TGG | GGG | CGT | AAC | |
| TGG | ACT | TAT | GCC | CAT | AAC | GGA | CAA | CTG | ACG | GGC | TAC | AAA | TCA | CTG | GAA | ACC | |
| GGC | AAC | TTC | CGC | CCG | GTA | GGC | GAA | ACC | GAC | AGC | GAA | AAA | GCC | TTC | TGC | TGG | |
| CTC | CTG | CAT | AAA | TTA | ACG | CAG | CGT | TAC | CCG | CGC | ACA | CCG | GGC | AAC | ATG | GCG | |
| GCG | GTA | TTT | AAA | TAT | ATC | GCC | TCA | CTG | GCG | GAT | GAA | CTG | CGG | CAG | AAG | GGC | |
| GTT | TTC | AAC | ATG | CTG | CTT | TCG | GAC | GGG | CGC | TAT | GTA | ATG | GCG | TAT | TGC | TCG | |
| ACT | AAT | TTA | CAC | TGG | ATC | ACC | CGC | CGC | GCG | CCG | TTT | GGC | GTG | GCA | ACG | TTG | |
| CTG | GAT | CAG | GAT | GTG | GAA | ATC | GAC | TTC | AGC | TCG | CAG | ACC | ACA | CCG | AAT | GAT | |
| GTG | GTC | ACG | GTG | ATT | GCA | ACA | CAG | CCG | CTG | ACG | GGC | AAT | GAA | ACC | TGG | CAA | |
| AAG | ATT | ATG | CCA | GGC | GAA | TGG | CGC | TTA | TTT | TGC | CTC | GGG | GAG | CGT | GTA | GTT | |
| TGA |
|
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Please send questions and comments to Sophie.Bachellier@pasteur.fr.