cutF - yaeF sequence
Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.
| ATG | GTG | AAA | AAA | GCG | ATA | GTG | ACA | GCG | ATG | GCT | GTA | ATC | AGC | CTC | TTT | ACT | |
| CTG | ATG | GGA | TGT | AAT | AAT | CGG | GCC | GAA | GTC | GAT | ACG | CTT | TCT | CCG | GCG | CAG | |
| GCT | GCC | GAA | CTG | AAA | CCG | ATG | CCG | CAA | AGT | TGG | CGC | GGC | GTG | CTG | CCG | TGT | |
| GCC | GAT | TGC | GAA | GGA | ATC | GAA | ACC | TCT | CTG | TTC | CTC | GAA | AAA | GAC | GGA | ACA | |
| TGG | GTG | ATG | AAT | GAG | CGT | TAT | CTC | GGT | GCT | CGT | GAA | GAA | CCT | TCC | TCC | TTC | |
| GCT | TCC | TAC | GGT | ACA | TGG | GCG | CGA | ACC | GCT | GAC | AAG | CTG | GTA | TTA | ACC | GAC | |
| AGC | AAA | GGT | GAA | AAG | TCA | TAT | TAT | CGG | GCG | AAA | GGC | GAT | GCG | CTG | GAG | ATG | |
| CTC | GAT | CGT | GAA | GGC | AAT | CCG | ATT | GAA | TCG | CAG | TTC | AAC | TAT | ACG | CTG | GAA | |
| GCG | GCA | CAA | TCC | AGT | TTA | CCT | ATG | ACG | CCG | ATG | ACC | CTG | CGG | GGC | ATG | TAT | |
| TTT | TAT | ATG | GCT | GAT | GCG | GCG | ACC | TTC | ACT | GAT | TGC | GCG | ACC | GGA | AAA | CGT | |
| TTC | ATG | GTA | GCG | AAT | AAC | GCA | GAG | CTG | GAG | CGT | AGC | TAC | CTG | GCT | GCG | CGC | |
| GGT | CAC | AGT | GAA | AAA | CCG | GTG | TTA | CTG | TCA | GTA | GAA | GGT | CAC | TTT | ACG | CTT | |
| GAG | GGT | AAT | CCG | GAT | ACC | GGT | GCG | CCG | ACT | AAA | GTA | TTG | GCA | CCC | GAT | ACG | |
| GCA | GGG | AAA | TTT | TAC | CCC | AAC | CAG | GAT | TGC | AGT | AGT | TTG | GGG | CAG | TAA |
|
| CCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAA |
| TTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAAC |
| GCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGA |
| TAAGGCATTTACTTTA
|
| TCA | CCG | GGT | CAA | ACC | AAC | AAA | GCG | ACC | CGC | CTT | GAT | ATA | AAT | CCC | AGG | CTT | |
| CAG | GTG | CCC | AAC | ATA | CTG | TAA | CTG | CGT | TTC | TGG | CTT | AAA | CGC | AGA | GAC | ATC | |
| ACC | AAT | ACG | CAT | ATG | CAT | CAG | ATC | GGC | AGG | GCT | AAT | CCA | GCC | CGA | TTG | CGC | |
| CAG | TGT | AAG | TGG | ATG | CCC | GGC | TTT | GGC | AAA | GGC | ATC | CGT | GAC | AAA | TTC | CGA | |
| ACA | AAA | CCA | CGA | CTT | TTT | GTC | TCC | TTC | GCC | CAC | ACT | GCT | TAA | CTG | CGC | TTT | |
| CGC | CAG | GCC | GCT | GAC | GCA | CTG | TTG | GCG | AAA | ATC | CTC | GGA | GAA | CGG | ATT | CAG | |
| TGA | GCA | CAT | CTG | GCG | AGT | CAC | CAT | AAA | GGG | AAT | AAA | TTC | GAC | AAT | GCC | GCG | |
| ATA | GTT | ATA | ACC | GCT | ATC | TTT | GAT | TTT | ATT | GGC | AAA | CGC | GGT | GAT | ATC | TGT | |
| GGC | TTG | TTG | CGG | GGT | AAG | ATC | CGG | GAC | TCG | TAA | GAC | GAA | AAG | CTT | ATC | ACT | |
| ATG | CTT | CAT | CGC | TTT | TTT | AAG | GGA | AAC | GAT | CTG | GAC | GCC | AGC | GCC | TGT | CGC | |
| TTC | TGC | AAC | GTT | ATT | ATC | ACC | CAG | AAA | GAT | TGC | AAC | GTG | ACT | CAC | AGA | GGA | |
| AGT | GCT | GAA | GAC | GCG | GAT | TCC | AAA | TGA | GGT | TAC | CCC | AAG | GCT | TGA | GGA | GAA | |
| CAG | CAA | ATC | GCC | GGG | TTT | GAG | ATC | AGG | TGC | CGT | TAT | TTC | TTT | TAT | TGA | TTG | |
| TTC | GGT | GAA | AGA | GCT | TTG | ATG | CTG | GAA | TTT | GAC | AGC | CCA | TGT | TTT | TGC | CTC | |
| GGC | ATC | TAC | TGC | TGT | GGC | TGA | TGG | GTC | TGG | CTG | GCT | GAT | ATC | AAC | GGT | ACA | |
| AGC | CGA | AAG | TAA | AAG | AAA | GCT | GGG | GAG | AAA | CAG | GCG | GCA | GTA | CGC | CTT | TGG | |
| TTT | ATC | CAT | TTT | ATA | CAA | TCC | ATG | TAA | AAA | AAG | GGC | CCT | GAA | ATT | CAG | GAC | |
| CCT | TTC | TGG | CAT |
|
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Please send questions and comments to Sophie.Bachellier@pasteur.fr.