codA - cynR sequence

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.
Direct repeats bracketing BIMEs are underlined.

GTG TCG AAT AAC GCT TTA CAA ACA ATT ATT AAC GCC CGG TTA CCA GGC GAA

GAG GGG CTG TGG CAG ATT CAT CTG CAG GAC GGA AAA ATC AGC GCC ATT GAT

GCG CAA TCC GGC GTG ATG CCC ATA ACT GAA AAC AGC CTG GAT GCC GAA CAA

GGT TTA GTT ATA CCG CCG TTT GTG GAG CCA CAT ATT CAC CTG GAC ACC ACG

CAA ACC GCC GGA CAA CCG AAC TGG AAT CAG TCC GGC ACG CTG TTT GAA GGC

ATT GAA CGC TGG GCC GAG CGC AAA GCG TTA TTA ACC CAT GAC GAT GTG AAA

CAA CGC GCA TGG CAA ACG CTG AAA TGG CAG ATT GCC AAC GGC ATT CAG CAT

GTG CGT ACC CAT GTC GAT GTT TCG GAT GCA ACG CTA ACT GCG CTG AAA GCA

ATG CTG GAA GTG AAG CAG GAA GTC GCG CCG TGG ATT GAT CTG CAA ATC GTC

GCC TTC CCT CAG GAA GGG ATT TTG TCG TAT CCC AAC GGT GAA GCG TTG CTG

GAA GAG GCG TTA CGC TTA GGG GCA GAT GTA GTG GGG GCG ATT CCG CAT TTT

GAA TTT ACC CGT GAA TAC GGC GTG GAG TCG CTG CAT AAA ACC TTC GCC CTG

GCG CAA AAA TAC GAC CGT CTC ATC GAC GTT CAC TGT GAT GAG ATC GAT GAC

GAG CAG TCG CGC TTT GTC GAA ACC GTT GCT GCC CTG GCG CAC CAT GAA GGC

ATG GGC GCG CGA GTC ACC GCC AGC CAC ACC ACG GCA ATG CAC TCC TAT AAC

GGG GCG TAT ACC TCA CGC CTG TTC CGC TTG CTG AAA ATG TCC GGT ATT AAC

TTT GTC GCC AAC CCG CTG GTC AAT ATT CAT CTG CAA GGA CGT TTC GAT ACG

TAT CCA AAA CGT CGC GGC ATC ACG CGC GTT AAA GAG ATG CTG GAG TCC GGC

ATT AAC GTC TGC TTT GGT CAC GAT GAT GTC TTC GAT CCG TGG TAT CCG CTG

GGA ACG GCG AAT ATG CTG CAA GTG CTG CAT ATG GGG CTG CAT GTT TGC CAG

TTG ATG GGC TAC GGG CAG ATT AAC GAT GGC CTG AAT TTA ATC ACC CAC CAC

AGC GCA AGG ACG TTG AAT TTG CAG GAT TAC GGC ATT GCC GCC GGA AAC AGC

GCC AAC CTG ATT ATC CTG CCG GCT GAA AAT GGG TTT GAT GCG CTG CGC CGT

CAG GTT CCG GTA CGT TAT TCG GTA CGT GGC GGC AAG GTG ATT GCC AGC ACA

CAA CCG GCA CAA ACC ACC GTA TAT CTG GAG CAG CCA GAA GCC ATC GAT TAC

AAA CGT TGA

ACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCT

ACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTG

ATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCA

TGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTG

AACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCA

GGCAATTCCAGCCGCAGACCTGTGTCAGCGG

CTA CCG TGA TTC ATT TCC GCC AAC AAC CGC GCA TTT ATC CAA CGC CAT GTG

CAA AAA TGC CTT CGC GGC GGC TGT CTG CCA GCT ATT TTT CCG CCG CAA CAA

AAC CGC CGT TCT CTC CAG TAG TGG CGG GGC AAG AGA AAT AGC TTT AAG CCC

GTC ATG TTG TGT GGC AAT CGC TGC TGG TAA CAA TGT GGA AAG GGA AGT GCG

GCG AAT CAG CTC CAG AAC CGC GCT AAT TGA GTT CGC CTC AAT GAC CAC CTG

TGG ATG TAG CCC CGC TTT CTC GCA GTA GTG GTC AAT TTG CTC TCT GGT GGC

AAA TTC CGC GCT GAG CAG GAC CAG TTT TTC ATC ATG CAA GCG ACT CAA CGC

CAC CTG TTC ATG GAC GGC CAG CGG ATG ATG TTG CGC CAC GAC TAA CGC TAA

ACT TTC TGT CAG TAA AGG AAT TGC CTC CAG CTC CGG CGA ATG CAC AGG CGC

GAA GGC AAT CCC AAC GTC CAA CTC GTC GCG GCA AAG CAT ATC CTC GAT TTT

CTC CTG CGA CAT TTC CTG TAG CTG GAG CGT GAT GCT GGG ATA GCG CGC ATA

GAA ATC CGC CAT TAA GGG GCC GAT AAA GTA GCT CGT AAA GGT GGG GGT GAC

GGC GAT ACG CAG CGA TCC TCG CGT CAG ATC GGC AAC ATC ATG AAT CGC CCG

TTT ACC CGC CCC CAG TTC CTG TAA CGC CCG GCT GGC GTA CTG TCG CCA GAC

TTC TCC TGC ATC AGT GAG ACG AAT CGT TCG CCC GCT ACG GTC AAA CAG CGG

CAC GCC TAA ACT CTC CTC TAA CTG GCG AAT CTG CTG GGA AAG CGC AGG TTG

GGA GAC GTG CAA CGC ACT GGC GGC ACG GGT GAA GCT GCC ATG TTC AGC CAC

GGC AAG AAA ATA ATT GAT ATG TCG AGA GAG CAT

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Please send questions and comments to Sophie.Bachellier@pasteur.fr.

codA - cynR sequence

Intergenic regions are in italics. The following repeats are coloured : BOCEs and boxC, BIMEs and PUs , IRUs, RSAs and 29 bp repeats. Direct repeats bracketing BIMEs are underlined.

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.
Direct repeats bracketing BIMEs are underlined.