cdd - sanA sequence
Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.
| ATG | CAT | CCA | CGT | TTT | CAA | ACC | GCT | TTT | GCC | CAA | CTT | GCG | GAT | AAC | TTG | CAA | |
| TCT | GCA | CTG | GAA | CCT | ATT | CTG | GCA | GAC | AAG | TAC | TTC | CCC | GCT | TTG | TTG | ACC | |
| GGG | GAG | CAA | GTC | TCA | TCG | CTG | AAG | AGC | GCA | ACG | GGG | CTG | GAC | GAA | GAC | GCG | |
| CTG | GCA | TTC | GCA | CTA | CTT | CCG | CTG | GCG | GCG | GCC | TGT | GCG | CGT | ACG | CCA | TTG | |
| TCG | AAT | TTT | AAT | GTT | GGC | GCA | ATT | GCG | CGC | GGT | GTG | AGC | GGA | ACC | TGG | TAT | |
| TTC | GGT | GCC | AAT | ATG | GAA | TTT | ATT | GGT | GCG | ACA | ATG | CAG | CAA | ACC | GTT | CAT | |
| GCC | GAA | CAA | AGC | GCG | ATC | AGC | CAC | GCC | TGG | TTG | AGT | GGT | GAA | AAA | GCG | CTT | |
| GCA | GCC | ATC | ACC | GTT | AAC | TAC | ACG | CCT | TGT | GGT | CAC | TGC | CGT | CAG | TTT | ATG | |
| AAT | GAA | CTG | AAC | AGC | GGT | CTG | GAT | CTG | CGT | ATT | CAT | CTG | CCG | GGC | CGC | GAG | |
| GCA | CAC | GCG | CTG | CGT | GAC | TAT | CTG | CCA | GAT | GCC | TTT | GGG | CCG | AAA | GAT | CTG | |
| GAG | ATT | AAA | ACG | CTG | CTG | ATG | GAC | GAA | CAG | GAT | CAC | GGC | TAT | GCG | CTG | ACG | |
| GGT | GAT | GCG | CTT | TCT | CAG | GCA | GCG | ATT | GCG | GCG | GCA | AAC | CGT | TCG | CAC | ATG | |
| CCT | TAC | AGT | AAG | TCG | CCA | AGC | GGT | GTC | GCG | CTG | GAA | TGT | AAA | GAC | GGT | CGT | |
| ATT | TTC | AGT | GGC | AGC | TAC | GCT | GAA | AAC | GCC | GCA | TTC | AAC | CCG | ACT | CTG | CCA | |
| CCG | TTG | CAG | GGA | GCG | TTA | ATT | CTG | TTG | AAT | CTC | AAG | GGT | TAT | GAT | TAC | CCG | |
| GAT | ATC | CAG | CGC | GCG | GTT | CTG | GCA | GAA | AAA | GCC | GAT | GCG | CCG | TTG | ATT | CAG | |
| TGG | GAT | GCC | ACC | TCC | GCA | ACG | CTG | AAA | GCT | CTC | GGC | TGT | CAC | AGT | ATC | GAC | |
| CGA | GTG | CTT | CTC | GCT | TAA |
|
| GCCTGGTGCCGGATGCGGCGTGAACGCCTTGTCCGGCTTGCCAGCCCTCTCCTGGTGTCGA |
| AATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGG |
| AAATTTTCCTTAGATCGAGTCTCCTGC
|
| ATG | TTA | AAG | CGC | GTG | TTC | CTC | AGC | CTG | TTA | GTC | CTG | ATC | GGC | TTG | CTG | CTG | |
| TTG | ACT | GTG | CTC | GGC | CTC | GAT | CGC | TGG | ATG | AGC | TGG | AAA | ACC | GCG | CCT | TAT | |
| ATC | TAC | GAC | GAA | TTG | CAG | GAT | CTC | CCC | TAC | CGC | CAG | GTC | GGT | GTG | GTG | CTC | |
| GGA | ACA | GCA | AAA | TAT | TAT | CGT | ACT | GGC | GTA | ATT | AAT | CAG | TAT | TAT | CGC | TAC | |
| CGC | ATT | CAA | GGA | GCG | ATT | AAT | GCC | TAT | AAC | AGC | GGT | AAG | GTA | AAT | TAT | CTA | |
| TTA | CTG | AGC | GGC | GAT | AAC | GCA | TTG | CAA | AGT | TAT | AAT | GAG | CCG | ATG | ACC | ATG | |
| CGC | AAA | GAT | TTA | ATC | GCT | GCT | GGT | GTC | GAC | CCA | TCA | GAT | ATT | GTT | CTC | GAT | |
| TAC | GCA | GGC | TTT | CGT | ACG | CTG | GAT | TCC | ATC | GTG | CGT | ACA | CGC | AAA | GTT | TTC | |
| GAT | ACT | AAT | GAT | TTC | ATT | ATT | ATC | ACC | CAA | CGT | TTC | CAC | TGT | GAG | CGA | GCA | |
| TTA | TTT | ATT | GCG | CTG | CAT | ATG | GGG | ATT | CAG | GCT | CAG | TGT | TAT | GCC | GTA | CCG | |
| TCA | CCG | AAA | GAT | ATG | CTG | TCA | GTA | CGT | ATT | CGT | GAA | TTT | GCC | GCC | CGT | TTC | |
| GGT | GCG | CTG | GCT | GAC | CTT | TAT | ATT | TTT | AAA | CGT | GAA | CCG | CGT | TTT | TTA | GGG | |
| CCG | CTG | GTC | CCT | ATT | CCG | GCT | ATG | CAC | CAG | GTA | CCG | GAA | GAT | GCG | CAG | GGG | |
| TAT | CCC | GCC | GTC | ACA | CCC | GAA | CAG | TTA | CTT | GAA | TTA | CAA | AAG | AAA | CAA | GGA | |
| AAG | TAG |
|
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Please send questions and comments to Sophie.Bachellier@pasteur.fr.