appB - appA sequence

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.

ATG TTT GAT TAT GAA ACA TTG CGC TTC ATC TGG TGG CTG CTG ATT GGC GTG

ATC CTG GTG GTC TTT ATG ATC TCC GAC GGA TTT GAC ATG GGG ATC GGC TGT

CTG CTG CCG CTG GTG GCG CGT AAT GAT GAT GAA CGC CGG ATA GTG ATA AAC

AGC GTT GGT GCA CAC TGG GAA GGC AAC CAG GTC TGG TTG ATC CTC GCT GGT

GGG GCA TTA TTT GCC GCC TGG CCC AGA GTG TAT GCA GCG GCG TTT TCC GGC

TTT TAT GTG GCG ATG ATC CTG GTG CTG TGC TCA CTG TTC TTC CGC CCG CTG

GCC TTT GAT TAT CGC GGA AAA ATC GCC GAT GCA CGC TGG CGT AAA ATG TGG

GAC GCC GGT CTG GTC ATC GGC AGT CTG GTG CCG CCG GTA GTC TTC GGT ATC

GCC TTC GGC AAC TTG TTG CTC GGC GTG CCG TTT GCC TTC ACA CCG CAA TTA

CGC GTG GAG TAT CTC GGC AGC TTC TGG CAA CTG CTG ACG CCA TTC CCT TTA

TTG TGC GGA TTG CTC AGC CTT GGG ATG GTG ATT TTG CAA GGT GGC GTC TGG

TTA CAA CTG AAA ACT GTT GGT GTG ATT CAT CTG CGT TCA CAG CTG GCG ACC

AAA CGC GCT GCA CTG TTG GTG ATG CTG TGC TTT TTG CTG GCG GGT TAC TGG

CTG TGG GTC GGT ATT GAT GGC TTT GTA CTG CTC GCC CAG GAT GCT AAC GGT

CCT TCC AAT CCG TTA ATG AAA CTG GTG GCA GTG CTA CCT GGT GCC TGG ATG

AAT AAT TTT GTC GAG TCG CCC GTT TTG TGG ATC TTC CCG CTG CTG GGA TTC

TTC TGC CCA TTG CTG ACG GTG ATG GCG ATT TAT CGT GGT CGC CCG GGT TGG

GGA TTT TTG ATG GCA TCA TTG ATG CAA TTT GGC GTG ATT TTC ACG GCA GGC

ATC ACG CTG TTC CCC TTT GTC ATG CCG TCA AGC GTG AGT CCG ATC TCC AGC

CTG ACG TTG TGG GAC AGT ACT TCC AGT CAG CTG ACG CTG AGC ATT ATG TTG

GTA ATC GTG CTG ATA TTT TTG CCC ATT GTG TTG CTC TAC ACT CTC TGG AGC

TAC TAC AAA ATG TGG GGG CGC ATG ACA ACA GAA ACT CTC CGC CGT AAC GAA

AAC GAG TTG TAC TAA

GGAGCAGAAACAATGTGGTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCT

CCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATG

CGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATC

G

ATG AAA GCG ATC TTA ATC CCA TTT TTA TCT CTT CTG ATT CCG TTA ACC CCG

CAA TCT GCA TTC GCT CAG AGT GAG CCG GAG CTG AAG CTG GAA AGT GTG GTG

ATT GTC AGT CGT CAT GGT GTG CGT GCT CCA ACC AAG GCC ACG CAA CTG ATG

CAG GAT GTC ACC CCA GAC GCA TGG CCA ACC TGG CCG GTA AAA CTG GGT TGG

CTG ACA CCG CGC GGT GGT GAG CTA ATC GCC TAT CTC GGA CAT TAC CAA CGC

CAG CGT CTG GTA GCC GAC GGA TTG CTG GCG AAA AAG GGC TGC CCG CAG TCT

GGT CAG GTC GCG ATT ATT GCT GAT GTC GAC GAG CGT ACC CGT AAA ACA GGC

GAA GCC TTC GCC GCC GGG CTG GCA CCT GAC TGT GCA ATA ACC GTA CAT ACC

CAG GCA GAT ACG TCC AGT CCC GAT CCG TTA TTT AAT CCT CTA AAA ACT GGC

GTT TGC CAA CTG GAT AAC GCG AAC GTG ACT GAC GCG ATC CTC AGC AGG GCA

GGA GGG TCA ATT GCT GAC TTT ACC GGG CAT CGG CAA ACG GCG TTT CGC GAA

CTG GAA CGG GTG CTT AAT TTT CCG CAA TCA AAC TTG TGC CTT AAA CGT GAG

AAA CAG GAC GAA AGC TGT TCA TTA ACG CAG GCA TTA CCA TCG GAA CTC AAG

GTG AGC GCC GAC AAT GTC TCA TTA ACC GGT GCG GTA AGC CTC GCA TCA ATG

CTG ACG GAG ATA TTT CTC CTG CAA CAA GCA CAG GGA ATG CCG GAG CCG GGG

TGG GGA AGG ATC ACC GAT TCA CAC CAG TGG AAC ACC TTG CTA AGT TTG CAT

AAC GCG CAA TTT TAT TTG CTA CAA CGC ACG CCA GAG GTT GCC CGC AGC CGC

GCC ACC CCG TTA TTA GAT TTG ATC AAG ACA GCG TTG ACG CCC CAT CCA CCG

CAA AAA CAG GCG TAT GGT GTG ACA TTA CCC ACT TCA GTG CTG TTT ATC GCC

GGA CAC GAT ACT AAT CTG GCA AAT CTC GGC GGC GCA CTG GAG CTC AAC TGG

ACG CTT CCC GGT CAG CCG GAT AAC ACG CCG CCA GGT GGT GAA CTG GTG TTT

GAA CGC TGG CGT CGG CTA AGC GAT AAC AGC CAG TGG ATT CAG GTT TCG CTG

GTC TTC CAG ACT TTA CAG CAG ATG CGT GAT AAA ACG CCG CTG TCA TTA AAT

ACG CCG CCC GGA GAG GTG AAA CTG ACC CTG GCA GGA TGT GAA GAG CGA AAT

GCG CAG GGC ATG TGT TCG TTG GCA GGT TTT ACG CAA ATC GTG AAT GAA GCA

CGC ATA CCG GCG TGC AGT TTG TAA

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Please send questions and comments to Sophie.Bachellier@pasteur.fr.

appB - appA sequence

Intergenic regions are in italics. The following repeats are coloured : BOCEs and boxC, BIMEs and PUs , IRUs, RSAs and 29 bp repeats.

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.