S. typhimurium ahpC - ahpF sequence

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.

ATG TCC TTA ATT AAC ACC AAA ATC AAA CCT TTC AAA AAC CAG GCG TTC AAA

AAC GGT GAA TTC ATT GAA GTC ACC GAG AAA GAT ACC GAA GGC CGC TGG AGC

GTC TTC TTC TTC TAC CCG GCC GAT TTT ACC TTT GTT TGC CCG ACT GAA CTG

GGT GAC GTT GCC GAC CAT TAC GAA GAA CTG CAG AAG CTG GGC GTA GAC GTT

TAT TCC GTC TCA ACC GAT ACT CAC TTC ACG CAC AAA GCA TGG CAC AGC AGC

TCT GAA ACT ATC GCA AAA ATC AAA TAT GCG ATG ATC GGC GAC CCG ACT GGC

GCC CTG ACC CGT AAC TTC GAC AAC ATG CGT GAA GAT GAA GGT CTG GCA GAC

CGT GCG ACC TTT GTT GTT GAC CCG CAG GGT ATC ATC CAG GCG ATC GAA GTT

ACC GCT GAA GGT ATC GGC CGT GAC GCG TCT GAC CTG CTG CGT AAA ATT AAA

GCA GCA CAG TAC GTT GCC GCT CAC CCA GGC GAA GTA TGC CCG GCG AAA TGG

AAA GAA GGC GAA GCG ACT CTG GCT CCA TCC TTA GAC CTG GTC GGT AAA ATC

TAA

ATTTCCGTCGTCTTTCACGCCATAGCTGCGTTGGCGTCGCCTGCTCACCCCGGTCACTTAC

TTCAGTAAGCTCCCGGGGATTCTCAGGCTAGCCGCCTTACTCTGACGTGAAATACTTTGGA

AATTGTTTCAGTCATGGGCGCACCCGCGCCCATTTCATTTCAGCACCATGACGCAAGTTGC

ATTAATGCAGTCCCGCGAAGTCGGCTTGCATGATGATGTTTTCAGAGAGGGAAGAAGA

ATG CTC GAC ACA AAT ATG AAA ACC CAG CTC AGG GCT TAC CTT GAG AAA CTG

ACC AAA CCT GTT GAG CTG ATT GCC ACG CTG GAT GAC AGC GCT AAA TCG GCG

GAA ATC AAG GAA CTG CTG GCT GAA ATC GCC GAG CTG TCC GAC AAA GTC ACG

TTT AAA GAA GAC AAT ACT CTG CCG GTG CGC AAG CCG TCT TTC CTG ATT ACG

AAT CCA GGT TCT CAG CAA GGG CCG CGC TTT GCC GGT TCT CCG CTG GGC CAC

GAA TTT ACC TCG CTG GTT TTG GCG CTG CTG TGG ACC GGC GGT CAT CCG TCA

AAA GAA GCG CAG TCG CTG CTG GAG CAG ATT CGC GAT ATT GAC GGC GAT TTT

GAA TTC GAA ACT TAT TAT TCA CTC TCC TGC CAT AAC TGC CCG GAC GTA GTG

CAG GCG CTG AAC CTG ATG GCG GTG CTG AAC CCG CGT ATT AAA CAT ACG GCA

ATT GAT GGC GGC ACC TTC CAG AAC GAA ATC ACC GAA CGT AAC GTG ATG GGC

GTT CCG GCG GTA TTT GTT AAC GGT AAA GAG TTC GGC CAG GGA CGT ATG ACT

CTG ACC GAG ATT GTC GCT AAA GTG GAT ACT GGC GCA GAA AAA CGC GCG GCG

GAA GCG CTG AAC AAA CGC GAT GCG TAT GAC GTA CTG ATT GTC GGC TCC GGC

CCG GCG GGC GCG GCG GCG GCG GTC TAC TCG GCG CGC AAA GGC ATC CGT ACC

GGT CTG ATG GGC GAG CGC TTC GGC GGT CAG GTG CTG GAT ACC GTG GAT ATC

GAA AAC TAT ATC TCG GTG CCG AAA ACC GAA GGC CAG AAA CTG GCG GGC GCG

CTG AAA GCG CAT GTC AGC GAT TAC GAC GTT GAC GTT ATC GAC AGC CAG AGC

GCA AGT AAA CTG GTT CCG GCC GCA ACA GAA GGC GGC TTG CAT CAG ATT GAA

ACG GCG TCC GGC GCA GTA TTG AAA GCG CGT AGT ATC ATC ATC GCC ACC GGC

GCG AAA TGG CGC AAT ATG AAT GTG CCG GGC GAG GAT CAG TAT CGC ACC AAA

GGC GTC ACC TAT TGT CCG CAC TGC GAC GGT CCG TTA TTT AAA GGG AAG CGT

GTG GCG GTC ATC GGC GGC GGC AAC TCT GGC GTT GAA GCG GCT ATC GAT CTG

GCA GGT ATT GTA GAA CAT GTT ACG TTG CTG GAG TTC GCG CCG GAG ATG AAG

GCG GAT CAG GTG CTA CAG GAC AAA GTG CGT AGT CTG AAA AAT GTC GAT ATC

ATT TTG AAT GCG CAA ACG ACA GAA GTG AAG GGC GAC GGT TCG AAA GTG GTG

GGA CTG GAG TAT CGT GAC CGT GTC AGC GGC GAT ATT CAT AGC GTC GCG CTG

GCA GGG ATT TTT GTG CAG ATT GGT CTG TTG CCG AAT ACC CAC TGG CTG GAA

GGC GCG CTT GAG CGT AAC CGC ATG GGC GAG ATC ATT ATT GAC GCC AAA TGT

GAA ACC AGC GTT AAG GGC GTC TTC GCC GCA GGC GAT TGC ACC ACC GTT CCT

TAC AAA CAG ATT ATC ATC GCC ACG GGC GAA GGG GCG AAA GCC TCG TTG AGC

GCC TTT GAT TAT CTG ATT CGC ACC AAA ATC GCA TAA

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Please send questions and comments to Sophie.Bachellier@pasteur.fr.

S. typhimurium ahpC - ahpF sequence

Intergenic regions are in italics. The following repeats are coloured : BOCEs and boxC, BIMEs and PUs , IRUs, RSAs and 29 bp repeats.

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.