aefA (kefA) - setA sequence

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.
Direct repeats bracketing BIMEs are underlined.

ATG ACT ATG TTC CAG TAT TAC AAA CGA TCA CGG CAT TTT GTT TTT TCA GCA

TTT ATT GCT TTT GTT TTT GTC TTG TTA TGC CAG AAC ACG GCG TTT GCG CGG

GCG TCA TCG AAT GGT GAT CTG CCG ACA AAA GCG GAC CTG CAG GCG CAA CTT

GAC TCA CTA AAT AAA CAA AAA GAT CTT TCT GCT CAG GAC AAA CTG GTG CAG

CAG GAT CTG ACA GAT ACA TTA GCC ACC CTC GAT AAA ATC GAT CGC ATA AAA

GAA GAG ACA GTT CAG CTA CGG CAA AAA GTC GCT GAA GCG CCG GAA AAA ATG

CGC CAG GCG ACC GCG GCG TTA ACA GCA CTT AGC GAT GTC GAT AAC GAC GAA

GAA ACG CGC AAA ATT CTG AGC ACG CTG TCG TTG CGC CAG CTG GAA ACT CGC

GTT GCC CAG GCG CTG GAC GAT TTG CAA AAC GCA CAA AAC GAT CTG GCG TCT

TAT AAC AGC CAG CTG GTT TCG TTA CAG ACG CAG CCC GAA CGC GTG CAA AAT

GCG ATG TAT AAC GCT TCG CAG CAG CTG CAA CAA ATT CGC AGT CGT CTG GAT

GGG ACT GAT GTC GGC GAG ACA GCC TTA CGT CCC AGC CAG AAA GTG TTA ATG

CAG GCC CAG CAG GCG TTG CTG AAT GCG GAG ATT GAC CAG CAG CGT AAA AGC

CTG GAA GGG AAC ACC GTC TTG CAG GAT ACC TTG CAA AAG CAA CGT GAT TAC

GTG ACG GCG AAC AGC GCT CGT CTG GAG CAC CAG TTA CAA CTG TTG CAA GAA

GCG GTA AAC AGC AAG CGC CTG ACT TTA ACC GAA AAA ACG GCG CAG GAA GCC

GTC TCC CCG GAT GAA GCC GCG CGT ATT CAG GCT AAT CCG CTG GTG AAG CAG

GAA CTG GAA ATT AAC CAG CAG TTA AGT CAG CGT CTG ATT ACC GCG ACT GAA

AAC GGT AAT CAG TTG ATG CAG CAA AAC ATT AAA GTC AAA AAC TGG CTG GAG

CGG GCG CTG CAA TCG GAA CGC AAT ATT AAA GAG CAG ATT GCC GTC CTG AAG

GGC AGC CTG CTG TTG TCT CGT ATC CTT TAC CAG CAA CAA CAA ACG CTG CCC

TCG GCG GAT GAA CTG GAA AAC ATG ACC AAC CGC ATC GCG GAT TTG CGT CTC

GAA CAG TTT GAA GTT AAC CAG CAG CGT GAT GCA CTC TTC CAG AGC GAT GCG

TTC GTC AAC AAA CTG GAA GAA GGT CAC ACC AAC GAA GTC AAC AGC GAA GTT

CAC GAT GCG TTA TTG CAA GTG GTT GAT ATG CGT CGC GAA TTG CTG GAT CAA

CTC AAC AAA CAG TTG GGT AAC CAG CTG ATG ATG GCC ATT AAC CTG CAA ATC

AAC CAG CAG CAG TTA ATG AGT GTG TCG AAA AAC CTG AAA TCC ATC CTG ACT

CAG CAA ATC TTT TGG GTG AAC AGT AAC CGT CCA ATG GAC TGG GAC TGG ATC

AAA GCG TTC CCG CAA AGC CTG AAA GAT GAA TTT AAG TCG ATG AAA ATC ACG

GTG AAC TGG CAA AAA GCC TGG CCC GCC GTT TTT ATC GCT TTC CTC GCT GGT

TTG CCG CTG CTG TTG ATT GCC GGG CTG ATC CAC TGG CGT CTG GGC TGG CTG

AAA GCG TAT CAA CAA AAA CTG GCT TCC GCT GTG GGT TCC CTG CGT AAC GAC

AGC CAG CTC AAC ACA CCA AAA GCG ATC CTT ATC GAC CTG ATC CGT GCG CTG

CCG GTG TGC CTG ATT ATT CTC GCG GTT GGC CTG ATT CTG TTG ACC ATG CAG

CTC AAC ATC AGC GAA CTG CTA TGG TCG TTC AGC AAA AAA CTG GCG ATA TTC

TGG CTG GTG TTT GGC CTG TGC TGG AAG GTA CTG GAG AAA AAC GGC GTT GCC

GTA CGT CAC TTC GGC ATG CCG GAA CAG CAG ACC AGC CAC TGG CGT CGG CAA

ATT GTC CGC ATC AGT CTC GCA TTG CTG CCT ATC CAT TTC TGG TCT GTG GTG

GCA GAA CTT TCC CCG CTG CAT CTG ATG GAT GAT GTG CTG GGG CAA GCG ATG

ATT TTC TTC AAC CTG CTG CTG ATT GCC TTC CTG GTA TGG CCG ATG TGC CGC

GAA AGC TGG CGT GAT AAA GAG TCG CAC ACC ATG CGA CTG GTC ACC ATT ACC

GTG CTG TCG ATA ATC CCG ATT GCG CTG ATG GTG CTG ACT GCT ACA GGC TAC

TTC TAC ACT ACG CTG CGT CTG GCA GGA CGC TGG ATT GAA ACC GTT TAT CTG

GTG ATC ATC TGG AAC CTG CTG TAC CAG ACG GTA CTG CGT GGC TTA AGC GTA

GCG GCG CGG CGT ATC GCC TGG CGT CGT GCG CTG GCG CGT CGG CAG AAT CTG

GTG AAA GAG GGC GCA GAA GGT GCT GAA CCG CCG GAA GAA CCC ACC ATT GCA

CTG GAG CAA GTT AAC CAG CAG ACG CTG CGT ATT ACC ATG TTG CTG ATG TTT

GCG CTG TTC GGT GTC ATG TTC TGG GCA ATT TGG TCC GAT TTG ATC ACC GTG

TTC AGC TAT CTC GAC AGC ATC ACG CTC TGG CAT TAC AAC GGC ACT GAA GCT

GGC GCT GCG GTG GTG AAA AAC GTC ACC ATG GGC AGT CTG TTG TTT GCG ATT

ATC GCC TCA ATG GTG GCC TGG GCG TTG ATT CGC AAC CTG CCT GGT TTA CTG

GAA GTG CTG GTG CTC TCG CGA CTG AAT ATG CGC CAG GGC GCG TCG TAT GCC

ATT ACT ACC ATC CTT AAC TAC ATC ATT ATT GCT GTT GGT GCG ATG ACG GTG

TTC GGA TCG CTG GGC GTC TCT TGG GAT AAA CTC CAG TGG CTG GCC GCA GCA

TTA TCC GTA GGT CTT GGT TTT GGT TTA CAA GAA ATT TTC GGT AAC TTC GTC

TCC GGT TTG ATC ATT CTA TTC GAA CGT CCG GTG CGT ATT GGC GAT ACG GTA

ACC ATT GGT AGC TTC TCG GGG ACG GTA AGT AAG ATC CGT ATT CGT GCG ACA

ACG ATT ACC GAT TTC GAT CGC AAA GAA GTG ATC ATC CCG AAC AAA GCG TTT

GTT ACC GAG CGT CTG ATC AAC TGG TCG TTG ACT GAC ACT ACT ACG CGT CTG

GTG ATC CGT CTC GGC GTG GCC TAT GGC TCC GAT CTG GAA AAA GTG CGT AAA

GTG TTA CTG AAG GCG GCG ACT GAG CAC CCA AGG GTG ATG CAC GAA CCA ATG

CCG GAA GTC TTC TTT ACG GCA TTT GGT GCC AGC ACG TTG GAT CAT GAG CTG

CGT CTG TAT GTG CGT GAA CTG CGT GAC CGT AGT CGT ACT GTC GAT GAG CTG

AAC CGT ACT ATC GAT CAG CTG TGC CGT GAA AAC GAC ATC AAC ATT GCC TTT

AAC CAG CTT GAA GTG CAT CTG CAC AAC GAG AAG GGC GAT GAG GTG ACG GAA

GTA AAA CGC GAC TAC AAA GGC GAT GAC CCG ACG CCA GCG GTA GGG TAA

AAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCATG

CCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAACCGCAAGAATTCAATATATTGCAG

GAGCGGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGCCCGCAACCTTA

GGGGACATTTAGCGACCCCATTTATTTC

TCA CTT TTC CGC CTC ATC ATC GCG CGT TAA TTT CTT TTC ATA ATC ACG CTT

TAC AAT ATC CAG CGC GCG CAG CAC GGT ACT GGC AGG GAT CTG ATT TTC CTC

CAG CAG CAC AAT CAA ATC GAC AGC CAG TTT GAC ATC GTC AGG GGC ATT TTC

CAG TGA CAT

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Please send questions and comments to Sophie.Bachellier@pasteur.fr.

aefA (kefA) - setA sequence

Intergenic regions are in italics. The following repeats are coloured : BOCEs and boxC, BIMEs and PUs , IRUs, RSAs and 29 bp repeats. Direct repeats bracketing BIMEs are underlined.

Intergenic regions are in italics. The following repeats are coloured :
BOCEs and boxC,
BIMEs and PUs ,
IRUs,
RSAs and 29 bp repeats.
Direct repeats bracketing BIMEs are underlined.