E. coliK-12 IRUs (ERICs)

 To display the regions alphabetically

Coordinates Flanking genes Structure Accession number
127755 - 127881 aceF - lpdA < IRU AE000121
190613 - 190739 rpsB - tsf < IRU AE000126
253337 - 253465 yafP - o88 < IRU AE000132
437374 - 437500 yajO - dxs IRU > AE000148
596203 - 596327 cusC - o110 IRU > AE000162
638731 - 638857 ahpC - ahpF IRU > AE000166
802545 - 802671 ybhI - ybhJ IRU > AE000179
1278575 - 1278700 narK - narG < IRU AE000220
1360538 - 1360664 ycjC - aldH < IRU AE000228
1766796 - 1766921 ydiJ - o370 < IRU AE000264
1946637 - 1946763 ntpA - aspS IRU > AE000280
2432776 - 2432814 dedA - truA IRU' > AE000320
2654429 - 2654555 pepB - yfhJ < IRU AE000339
3069291 - 3069417 fba  - pgk IRU > AE000376
3576453 - 3576579 gntR - yhhW < IRU AE000420
3782087 - 3782210 grxC - yibN < IRU AE000439
3961842 - 3961968 gppA - rhlB IRU > AE000454
4010643 - 4010620 metR - metE IRU > AE000458
4177227 - 4177352 rplA - rplJ < IRU AE000472
4456923 - 4457049 pmbA - cybC < IRU AE000494/95
4580688 - 4580814 hsdM - hsdR < IRU AE000505

Other E. colistrains

Strains Flanking genes Structure Accession number Comments
E. coliW hpaC - cts1 IRU > Z37980  
E. coli172 orf - orf IRU > AF041809  
E. coliF362 waaR - waaO IRU > AF019375  
E. coliE2348/69 rOrf1 - orf1 IRU > AF022236  
E. coliEDL933 yadD - panC IRU > AE005189 IRU interrupted by a 68 bp element, also found within other IRUs.
E. coliEDL933 rpsB - tsf < IRU AE005193  
E. coliEDL933 yafP - o88 < IRU AE005201  
E. coliEDL933 ybhI - ybhJ IRU > AE005254/55  
E. coliEDL933 ydiJ - o370 < IRU AE005391/92  
E. coliEDL933 ntpA - aspS IRU > AE005408/09  
E. coliEDL933 pepB - yfhJ < IRU AE005482  
E. coliEDL933 fba  - pgk IRU > AE005522/23  
E. coliEDL933 gntR - yhhW < IRU AE005567  
E. coliEDL933 grxC - yibN < IRU AE005588  
E. coliEDL933 z5140 - z5142 < IRU AE005597 In a O157:H7 specific island
E. coliEDL933 gppA - rhlB IRU > AE005609  
E. coliEDL933 metR - metE IRU > AE005614  
E. coliEDL933 pmbA - cybC < IRU AE005655/56  

Salmonella typhimurium
Flanking genes Structure Accession number Comments
ahpC - ahpF IRU > J05478  
orf  - cysJ IRU > M23007  
glnA - glnL < IRU J01803  
livJ - livK IRU > - 30 - < Z1 D00478  
infB - rfbA IRU > - 6 - < Z1 AJ002552  
metE - metR < IRU M17356  
mviM - mviN < IRU - 59 - < Z2 - 5 - Y > AJ002552 Central part of the element missing
orf  - pepB IRU> AF201078 IRU interrupted by a 68 bp element, also found within other IRUs
yjeI - orf < IRU AF120078  
nirD - nirC < IRU M64606 IRU interrupted by a 68 bp element, also found within other IRUs
deoB - orf IRU > - 21 - < Z1 AF003833  
entC - orf IRU > AF094917  
pepM - orf Z2> - 9 - < IRU - 1 - < Y AJ002552  
pexB - gln < IRU U73111  
rpsU - dnaG < IRU M14427  
sdhA - ratC IRU > AF140550  
tdk  - osmZ IRU -  
topA - cysB IRU > M15040 IRU interrupted by 75 bp.
ygdF - lgt < IRU L13259 truncated IRU
orf  - napB < IRU AF132131  
ugtL - pcgL IRU > AF120672 truncated IRU
orf  - sucA IRU > AF093783 IRU incompletly sequenced
ilvE - ilvD < IRU AF233324  
rrlB - rrfB < IRU AF170176  
clpP - clpX IRU > AB033628  
orf  - pepB IRU > AF201078 IRU interrupted by a 68 bp element, also found within other IRUs.


Klebsiella sp.
Flanking genes Structure Accession number Comments
malE - malF IRU> X95300 K. oxytoca. BIME in K. pneumoniae.
mrkA - orf IRU> M20720 K. pneumoniae
pddC - orf <IRU D45071 K. oxytoca. IRU interrupted by a 68 bp element, also found within other IRUs.
orf  - xylA IRU> X61059 K. pneumoniae


Citrobacter sp.
Flanking genes Structure Accession number Comments
vexE - orf IRU> AF316551 C. freundii


Erwinia sp.
Flanking genes Structure Accession number Comments
hns  - orf IRU> X89444 E. chrysanthemi.
indB - indC <IRU AJ277403 E. chrysanthemi. IRU interrupted by a 68 bp element, also found within other IRUs.
kduI - kduD <IRU X62073 E. chrysanthemi. Central deletion.
orf  - crp <IRU X89443 E. chrysanthemi. Central deletion.
orf  - echR IRU> U45854 E. chrysanthemi.
orf  - outC <IRU L02214 E. chrysanthemi.
orf  - prt IRU > M36651 E. carotovora.
pehS - orf IRU > AF022772 E. carotovora. Central deletion.


Pectobacterium chrysanthemi
Flanking genes Structure Accession number Comments
idgB - idgC <IRU AF265211            


Proteus mirabiblis
Flanking genes Structure Accession number Comments
flgA - flgM <IRU U82214  


Hafnia alvei
Flanking genes Structure Accession number Comments
gor  - ampR IRU> AF180952  


Serratia marcescens
Flanking genes Structure Accession number Comments
aspA - orf2 <IRU D13252  


Vibrio cholerae
Flanking genes Structure Accession number Comments
hapR - orf <IRU AF000716  
lap  - orf <IRU D84215  
orf  - fur <IRU M85154  
orf  - hlyA <IRU Y00557  
orf  - orf IRU> AF047974  
sulA - orf <IRU X61383 IRU in the 5' end of the reading frame.
orf  - viuA IRU > U11759  
recG - orf <IRU AF260247  
rpoH - udhA IRU> U44432  
z45f - orf IRU> AJ231103  
z70r - orf IRU> AJ231130  

Yersinia sp.
Flanking genes Structure Accession number Comments
fepC - orf <IRU AF082879 Y. enterocolitica.
irp6 - ybtA <IRU AJ132668 Y. enterocolitica.
orf  - blaA <IRU X57074 Y. enterocolitica. IRU with a central deletion.
cysQ - cpdB <IRU X85742 Y. enterocolitica.
orf  - invA <IRU M17448 Y. pseudotuberculosis.
orf  - pel <IRU M19399 Y. pseudotuberculosis.
phoH - orf23 IRU> AL031866 Y. pestis.
sodA - orf <IRU X96852 Y. enterocolitica. IRU with a central deletion.
ureB - ureC <IRU L24101 Y. enterocolitica. IRU with a 5' end deletion.
ypsI - orf 'IRU> AF079973 Y. pseudotuberculosis. truncated IRU

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