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*Domain*	*Species*
*Archaea*	Aeropyrum pernix K1 Archaeoglobus fulgidus Haloarcula marismortui ATCC 43049 Halobacterium sp. NRC-1 Methanococcus jannaschii Methanococcus maripaludis S2 Methanopyrus kandleri AV19 Methanosarcina acetivorans C2A Methanosarcina mazei Go1 Methanothermobacter thermautotrophicus Nanoarchaeum equitans Kin4-M Pyrobaculum aerophilum Pyrococcus abyssi Pyrococcus furiosus DSM 3638 Pyrococcus horikoshii Sulfolobus solfataricus Sulfolobus tokodaii Thermoplasma acidophilum Thermoplasma volcanium
*Chloroplast*	Anthoceros formosae chloroplast Chlorella vulgaris Chloroplast Cyanidioschyzon merolae strain 10D chloroplast Cyanidium caldarium strain RK1 chloroplast Eimeria tenella apicoplast Marchantia polymorpha Chloroplast Odontella sinensis Chloroplast Porphyra purpurea Chloroplast
*Cyanelle*	Cyanophora paradoxa cyanelle
*Eubacteria*	Acinetobacter sp. ADP1 Agrobacterium tumefaciens str. C58 (Cereon) Agrobacterium tumefaciens str. C58 (Dupont) Anaplasma marginale str. St. Maries Aquifex aeolicus Azoarcus sp. EbN1 Bacillus anthracis str. Ames Bacillus anthracis str. Ames Ancestor Bacillus anthracis str. Sterne Bacillus cereus ATCC 10987 Bacillus cereus E33L Bacillus halodurans Bacillus licheniformis ATCC 14580 Bacillus subtilis 168 Bacillus thuringiensis serovar konkukian str. 97-27 Bacteroides fragilis YCH46 Bacteroides thetaiotaomicron VPI-5482 Bartonella henselae str. Houston-1 Bartonella quintana str. Toulouse Bdellovibrio bacteriovorus HD100 Bifidobacterium longum NCC2705 Bordetella bronchiseptica RB50 Bordetella parapertussis Bordetella pertussis Tohama I Borrelia burgdorferi Borrelia garinii PBi Bradyrhizobium japonicum USDA 110 Brucella melitensis 16M Brucella suis 1330 Buchnera aphidicola str. Bp (Baizongia pistaciae) Buchnera aphidicola str. Sg Buchnera sp. APS Burkholderia mallei ATCC 23344 Burkholderia pseudomallei K96243 Campylobacter jejuni NCTC 11168 Candidatus Blochmannia floridanus Caulobacter crescentus Chlamydia muridarum Chlamydia trachomatis Chlamydophila caviae GPIC Chlamydophila pneumoniae AR39 Chlamydophila pneumoniae CWL029 Chlamydophila pneumoniae J138 Chlamydophila pneumoniae TW-183 Chlorobium tepidum TLS Chromobacterium violaceum ATCC 12472 Clostridium acetobutylicum Clostridium perfringens str. 13 Clostridium tetani E88 Corynebacterium diphtheriae Corynebacterium efficiens YS-314 Corynebacterium glutamicum ATCC 13032 Coxiella burnetii RSA 493 Deinococcus radiodurans Desulfotalea psychrophila LSv54 Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough Enterococcus faecalis V583 Erwinia carotovora subsp. atroseptica SCRI1043 Erwinia pyrifoliae plasmid pEP36 Escherichia coli CFT073 Escherichia coli K-12 Escherichia coli O157:H7 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Geobacillus kaustophilus HTA426 Geobacter sulfurreducens PCA Gloeobacter violaceus PCC 7421 Haemophilus ducreyi 35000HP Haemophilus influenzae Rd Helicobacter hepaticus ATCC 51449 Helicobacter pylori 26695 Helicobacter pylori J99 Idiomarina loihiensis L2TR Lactobacillus johnsonii NCC 533 Lactobacillus plantarum WCFS1 Lactococcus lactis subsp. lactis IL1403 Legionella pneumophila str. Lens Legionella pneumophila str. Paris Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Leifsonia xyli subsp. xyli str. CTCB07 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 Leptospira interrogans serovar Lai str. 56601 Listeria innocua Listeria monocytogenes EGD Listeria monocytogenes str. 4b F2365 Mannheimia succiniciproducens MBEL55E Mesoplasma florum L1 Mesorhizobium loti MAFF303099 Methylococcus capsulatus str. Bath Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium bovis AF2122/97 Mycobacterium leprae Mycobacterium tuberculosis Mycoplasma gallisepticum R Mycoplasma genitalium Mycoplasma hyopneumoniae 232 Mycoplasma mobile 163K Mycoplasma mycoides subsp. mycoides SC Mycoplasma penetrans HF-2 Mycoplasma pneumoniae Mycoplasma pulmonis Neisseria meningitidis Nitrosomonas europaea ATCC 19718 Nocardia farcinica IFM 10152 Nostoc sp. PCC 7120 Oceanobacillus iheyensis HTE831 Onion yellows phytoplasma OY-M Parachlamydia sp. UWE25 Pasteurella multocida PM70 Photobacterium profundum SS9 Photorhabdus luminescens subsp. laumondii TTO1 Picrophilus torridus DSM 9790 Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9313 Prochlorococcus marinus subsp. marinus str. CCMP1375 Prochlorococcus marinus subsp. pastoris str. CCMP1986 Propionibacterium acnes KPA171202 Pseudomonas aeruginosa PAO1 Pseudomonas putida KT2440 Pseudomonas resinovorans plasmid pCAR1 Pseudomonas syringae pv. tomato str. DC3000 Ralstonia solanacearum Rhodopirellula baltica SH 1 Rhodopseudomonas palustris CGA009 Rickettsia conorii Rickettsia prowazekii Rickettsia typhi str. Wilmington Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC Salmonella enterica subsp. enterica serovar Typhi Ty2 Salmonella enterica subsp. enterica serovar Typhi strain CT18 Salmonella typhimurium LT2 Shewanella oneidensis MR-1 Shigella flexneri 2a str. 2457T Shigella flexneri 2a str. 301 Sinorhizobium meliloti Staphylococcus aureus Staphylococcus epidermidis ATCC 12228 Streptococcus agalactiae 2603V/R Streptococcus agalactiae NEM316 Streptococcus mutans UA159 Streptococcus pneumoniae R6 Streptococcus pneumoniae TIGR4 Streptococcus pyogenes M1 GAS Streptococcus pyogenes MGAS10394 Streptococcus pyogenes MGAS315 Streptococcus pyogenes SSI-1 Streptococcus thermophilus CNRZ1066 Streptococcus thermophilus LMG 18311 Streptomyces avermitilis MA-4680 Streptomyces coelicolor A3(2) Symbiobacterium thermophilum IAM 14863 Synechococcus sp. WH 8102 Synechocystis sp. PCC6803 Thermoanaerobacter tengcongensis Thermosynechococcus elongatus BP-1 Thermotoga maritima Thermus thermophilus HB27 Thermus thermophilus HB8 Treponema denticola ATCC 35405 Treponema pallidum Tropheryma whipplei TW08/27 Tropheryma whipplei str. Twist Ureaplasma urealyticum Vibrio cholerae N16961 Vibrio parahaemolyticus Vibrio vulnificus CMCP6 Vibrio vulnificus YJ016 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis Wolbachia endosymbiont of Drosophila melanogaster Wolinella succinogenes Xanthomonas axonopodis pv. citri str. 306 Xanthomonas campestris pv. campestris str. ATCC 33913 Xylella fastidiosa Xylella fastidiosa Temecula1 Yersinia pestis CO92 Yersinia pestis KIM Yersinia pestis biovar Microtus str. 91001 Yersinia pseudotuberculosis IP 32953
*Eukaryotes*	Arabidopsis thaliana Ashbya gossypii ATCC 10895 Caenorhabditis elegans Candida glabrata CBS138 Debaryomyces hansenii CBS767 Drosophila melanogaster Encephalitozoon cuniculi Kluyveromyces lactis NRRL Y-1140 Plasmodium falciparum 3D7 Saccharomyces cerevisiae Yarrowia lipolytica CLIB122
*Megaplasmids*	Agrobacterium rhizogenes plasmid pRi1724 Agrobacterium tumefaciens Plasmid Ti Agrobacterium tumefaciens plasmid pTi-SAKURA Agrobacterium tumefaciens str. C58 plasmid AT (Cereon) Agrobacterium tumefaciens str. C58 plasmid AT (Dupont) Agrobacterium tumefaciens str. C58 plasmid Ti (Cereon) Arthrobacter nicotinovorans pAO1 plasmid Azoarcus sp. EbN1 plasmid 2 Bacillus thuringiensis serovar israelensis plasmid pBtoxis Citrobacter freundii plasmid pCTX-M3 Clostridium acetobutylicum megaplasmid pSOL1 Clostridium perfringens str. 13 plasmid pCP13 Clostridium tetani plasmid pE88 Cupriavidus necator H16 megaplasmid pHG1 Deinococcus radiodurans plasmid MP1 Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough plasmid pDV Enterococcus faecalis V583 plasmid pTEF1 Enterococcus faecalis V583 plasmid pTEF2 Enterococcus faecalis plasmid pEF1071 Escherichia coli megaplasmid pO113 Haloarcula marismortui ATCC 43049 plasmid pNG500 Haloarcula marismortui ATCC 43049 plasmid pNG600 Haloarcula marismortui ATCC 43049 plasmid pNG700 Halobacterium sp. NRC-1 plasmid pNRC200 Legionella pneumophila str. Paris plasmid pLPP Listeria innocua plasmid pLI100 Listonella anguillarum plasmid pEIB1 Listonella anguillarum plasmid pJM1 Nostoc sp. PCC 7120 plasmid pCC7120alpha Nostoc sp. PCC 7120 plasmid pCC7120gamma Pseudomonas sp. ADP plasmid pADP-1 Ruegeria sp. PR1b plasmid pSD20 Ruegeria sp. PR1b plasmid pSD25 Ruegeria sp. PR1b plasmid pSD25 Salmonella enterica subsp. enterica serovar Typhi CT18 plasmid pHCM2 Salmonella enterica subsp. enterica serovar Typhi strain CT18 plasmid pHCM2 Serratia marcescens plasmid R478 Shewanella oneidensis MR-1 megaplasmid Sinorhizobium meliloti plasmid pSymA Sinorhizobium meliloti plasmid pSymB Staphylococcus aureus subsp. aureus MSSA476 plasmid pSAS Staphylococcus epidermidis pSE-12228-05 Staphylococcus epidermidis pSE-12228-06 Staphylococcus sciuri pSCFS1 plasmid Staphylococcus warneri plasmid pPI-1 Streptomyces rochei plasmid pSLA2-L Thermus thermophilus HB27 plasmid pTT27 Thermus thermophilus HB8 plasmid pTT27 Yersinia pestis biovar Microtus str. 91001 plasmid pMT1 Yersinia pestis plasmid pMT1 Zymomonas mobilis ZM4 plasmid 1
*Mitochondrion*	Brassica napus mitochondrion Chara vulgaris mitochondrion Malawimonas jakobiformis Mitochondrion Oryza sativa mitochondrion Reclinomonas americana Mitochondrion Zea mays strain NB mitochondrion
*Virus*	Acanthamoeba polyphaga mimivirus Amsacta moorei entomopoxvirus Chlorella virus CVK2

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