EMBO 2008 course

Schedule (pdf version)

COFFEE : every day at 10:30 and at 16:00
LUNCH : every day at 12:30

Monday 30
19:30 drink / dinner "Aux Artistes", 63, rue Falguière, 75015 Paris

Tuesday 1
AM
9:00 presentation of participants
11:00 Richard Lavery : historical perspective, force fields
PM
14:00 Valerie Daggett : molecular dynamics and energy minimisation, analysis daggett_1.ppt daggett_2.ppt
16:00 Tru Huynh: Intro to computing environment
16:30 Markwick / Blondel / Huynh: Practical Amber I : setup
                                  all the files for the practicals
EVENING : poster session / buffet dinner

Wednesday 2
AM
9:00 Richard Lavery : Monte Carlo, coarse grain models
11:00 Alan Mark :  free energy calculations
PM
14:00 Markwick / Malliavin / Huynh: Practical Amber II :analysis
EVENING : poster session / buffet dinner

Thursday 3
AM
9:00 Alan Mark : research talk
11:00 Valerie Daggett : research talk
PM

14:00 Konrad Hinsen: normal modes, python programming (handouts) + practical 
2004 normal modes version
EVENING : free

Friday 4
AM

9:00 Tom Simonson : electrostatics, implicit solvent ( slides and text  ) 
11:00 Adrian Mulholland: QMMM
PM
14:00 Mulholland: practical QMMM
EVENING : Pizza Flora, 113-117, rue de Cambronne, 75015 Paris

Saturday 5
AM
9:00 Michael Nilges: modelling with experimental data
11:00 Anna Tramontano : homology modelling
PM
14:00 Practical homology modelling
EVENING : free

Sunday 6
AM
9:00 Rebecca Wade: Brownian Dynamics ( EMBO2008-UHBD.pdf , EMBO2008-BD.pdf )
11:00 Phineus Markwick: accelerated dynamics
PM
14:30 Excursion "bâteau mouche"
EVENING : free

Monday 7
AM
9:00 Leslie Kuhn: docking
11:00 Leslie Kuhn: practical docking

add the following line to your $HOME/.bashrc
SLIDE_DIR=/home/kuhn/slide_v3.0
export SLIDE_DIR
SLIDE_DATA_DIR=${HOME}/slide_data
export SLIDE_DATA_DIR
PATH=${SLIDE_DIR}/bin:$PATH
export PATH
then
. ~/.bashrc

PM 14:00 Leslie Kuhn: practical docking continued 16:30 round table EVENING : course dinner : L'Avel, 65, boulevard Pasteur