Internet links in Rachid Maroun's booklets for the Institut Pasteur
course Biochimie des Proteines, 2002.
Cours B Prot 2002
Fasc1
General search sites and software
- AltaVista
- Yahoo - Science
- Bio Netbook
- EBI BioCatalog
- Virtual Library: Biosciences
- Oxford Centre for Molecular Sciences
- Harvard Dept of MCB - More Biology Links
- The National Center for Biotechnology Information
- ExPASy Molecular Biology Server
- PIR-International Protein Sequence Database
- NRL3D Text Search
- BLAST Search
- SDSC Biology
EMBL
- EMBL - European Molecular Biology Laboratory
- EMBL WWW Services
- The PredictProtein server
EBI
- EBI, the European Bioinformatics Institute (EMBL Outstation, Hinxton, UK) serving the bioinformatics community
- EMBL Dali: email server for 3-D protein structure database searches
- BIOcomputing unit, 3D modelling services
- DSSP: Database of Secondary Structure in Proteins
- EBI: FSSP database, fold classification based on structure-structure alignment of proteins
SCOP
- SCOP: Structural Classification of Proteins
TOPS
- Protein Topology home page
RCSB, 3DB Browser, PDBLite, NRL3D
- 3DB Browser at the EBI mirror site
- PDB mirror site
- RCSB Home Page
- PDBsum
Protein quality verification
- Biotech Validation Suite for Protein Structures
- PROCHECK - protein structure checks
- Protein-Protein Interaction Analysis Server
SwissProt
- ExPASy Molecular Biology Server
NCBI
- The National Center for Biotechnology Information
- Taxonomy (Homo sapiens)
Modeling
- SWISS-MODEL
- BIOMOLECULAR MODELLING LABORATORY, ICRF
- Server page
- Universal Molecular Modeling Software List
Courses Tutorials
- Module 2 - Basic Molecular Modelling
- Module 7 - Advanced Molecular Modelling
- CHB221 Molecular Modelling: Index
- CHB221 Molecular Modelling, General overview
- Statistical Mechanics
- Molecular Dynamics
- BCG Lecture 7: Protein structure/function prediction
- BCG: Four levels of protein structure description
- Tutorial-Introduction to Macromolecular Simulation
- Neural Nets by Kevin Gurney
Logiciels commerciaux
- ICM/MOLSOFT: Molecular modeling and computational chemistry ICM
- Accelrys - Life science simulation and analysis
Fasc3
- ExPASy Molecular Biology Server
- PIR-International Protein Sequence Database
- RCSB Home Page
- PDB SearchLite
- Appendix B - Brookhaven PDB file format
- mmCIF
- Send a new protein to be checked.
- PROCHECK Sample plots
- Protein Topology home page
Fasc5
- CATH database of structural domains
Fasc6
Prediction de la structure secondaire
- Submit to PredictProtein (expert)
- Jpred - A consensus secondary structure prediction server
Threading
- The PredictProtein server
- 3-D Structure analysis; threading: 123D
- UCLA-DOE Fold Recognition Server
- Cartan Login Page
- 3D-PSSM Protein Fold Recognition (Threading) Server
- FUGUE Profile Lib Search