| X-PLOR file | Description |
|---|---|
| MDSA-SO-WDMR-1.0 | A conformational search protocol designed to begin with a well-defined monomer structure; from O'Donoghue et al. (1996). |
| MDSA-SO-WDMR-1.1 | Later version of the above protocol; uses rigid body dynamics for the initial search; in some cases more efficient than 1.0. |
| MDSA-SO-WDO-1.0 | Used to re-anneal symmetric oligomer structures produced by the above protocols. |
| GenerateDistanceSymmetryTbl | Used to set up distance symmetry restraints in the above protocols; works for any oligomer up to a hexamer |
| BuildOligomer | Used in the above protocols to construct the oligomer from monomer coordinates. |
| DefineEquivalentSubunits | Used in the above protocols for the NCS restraint to define equivalent subunits. |
| rmsd | Used in the above protocols to monitor the progress of the calculation. |