Unité de Bioinformatique Structurale (Michael Nilges)

The structural bioinformatics (see our definition of bioinformatics)
research group was created in March 2001.
Our research focuses on the relationship between sequence,
three-dimensional structure, and function of proteins, using, among
others, modelling techniques and molecular dynamics simulations. We also
continue the development of software for automated NMR structure
calculations, and are collaborating with structural genomics projects
and the structure databases. We have established collaborations with
experimental groups at the Institut Pasteur and elsewhere, for example,
in atomic force spectroscopy, X-ray crystallography, and microscopy. Our
work is aimed at helping in the interpretation of experimental data, and
generating hypotheses that can be tested experimentally.
Here is a list of
Michael Nilges' articles (1998-2002).
An EMBO Practical Course on structure determination of biological
macromolecules by solution NMR was held at the
EMBL, Heidelberg, Germany, Sept 10-17, 2003.
Some material can be found at
EMBO course homepage
An EMBO Practical Course on Biomolecular Simulation was held
at the Institut Pasteur in July 2004.
EMBO course 2004
An EMBO Practical Course on Biomolecular Simulation was held
at the Institut Pasteur between June 28th and July 4th 2006.
EMBO course 2006
An EMBO Practical Course on Biomolecular Simulation was held
at the Institut Pasteur between July 1st and 8th 2008.
Announce at EMBO/
copy of the webserver used during the course.
Adress |
 |
Nilges Group
Institut Pasteur
Unité de Bioinformatique Structurale
25-28 rue du Dr Roux
F-75724 Paris CEDEX 15
France
Tel: +33-1-45 68 82 30
Fax: +33-1-45 68 87 19
Secretary: +33-1-44 38 91 09
ARIA (Ambiguous
Restraints in Iterative Assignment) |  |
ARIA is a software for automated NOE assignment and NMR structure calculation.
Here is a link to our
new ARIA homepage and
the previous ARIA homepage.
StarDOM |  |
StarDOM is a software package to transform data provided in the Self
Defining Text Archival and Retrieval (STAR) format
into XML.
The
StarDOM homepage
has been moved to the Institut Pasteur.
PH domain modeling |  |
Here is a link to our
PH domain page where you can find the results of
our extensive homology modeling study.
X-PLOR |  |
Our
X-PLOR site
Our
X-PLOR site contains a tutorial and a local copy of the manual.
NMR protocols
We provide some
NMR protocols for X-PLOR.
ftp server |  |
Our
ftp server contains more protocols for XPLOR and CNS, our force fields etc.
Course material |  |
You can find here some
course material of past seminars and workshops.
Group members |  |
Previous group members |  |
Local information
(only for internal use) |  |
Some information for group members,
and our intranet web server.
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Last modified: October 4th, 2006
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