News :

October 2008: templates were slightly shortened to exclude terminal positions corresponding to primer sequences, and to create in-frame templates.

January 2009: the gmk template was shortened by 3 nucleotides in 3'

March 2009: the sodA template was shortened by 3 nucleotides in 3'


PF8
Genotyping of Pathogens and Public Health Platform
Institut Pasteur
25-28, Rue du Docteur Roux
75724 Paris Cedex 15

FRANCE

Tel + (33) 1 45 68 83 24
Fax + (33) 1 40 61 39 43

 

Clostridium difficile MLST Database

database not maintained after october 2009.

Access to New MLST scheme

 

The Clostridium difficile MLST website contains two linked databases - one for allelic profiles and sequences, the other for isolate information. This structure offers advantages over a single database system. Further details can be found here.

This MLST scheme was developped by Ludovic Lemée and colleagues

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Databases are maintained by Sylvain Brisse using software developed by Keith Jolley at Oxford (Jolley et al. 2004, BMC Bioinformatics, 5:86). Web managers : Ghislaine GUIGON and Jean-michel THIBERGE

This site is hosted by the technological platform Genotyping of Pathogens and Public Health of Institut Pasteur.