Image Analysis for biology
Statistical detection
- B. Zhang, J. Enninga, J-C. Olivo-Marin and C. Zimmer: Automated super-resolution detection of Fluroescent Rods in 2D, Proc. IEEE International Symposium on Biomedical Imaging (ISBI
2006), April 6-9, 2006, Arlington, Virginia,
USA, pp.
1296-1299. [IEEE
Xplore]
Deformable models for cell
tracking
- J. Pécréaux, C. Zimmer,
J-C. Olivo-Marin, Biophysical active contours for cell tracking I: tension and bending, accepted for publication in IEEE International Conference on Image
Processing, Atlanta,
USA,
October 8-11, 2006.
- C. Zimmer, B. Zhang, A. Dufour,
A. Thébaud, S. Berlemont,
V. Meas-Yedid and J-C. Olivo-Marin, On the
digital trail of mobile cells, IEEE
Signal Processing Magazine, Special Issue on Molecular and Cellular Bioimaging, vol. 23, nb. 5,
pp. 54-62, May, 2006. [IEEE
Xplore]
- A. Dufour, V. Shinin, S. Tajbakhsh, N. Guillén, J-C. Olivo-Marin and C. Zimmer, Segmenting
and tracking fluorescent cells in dynamic 3D microscopy with coupled
active surfaces, IEEE Transactions
on Image Processing, Special Issue on Molecular and Cellular Bioimaging, 14,
9, 1396-1410, September, 2005.[PubMed] [IEEE
Xplore]
- C. Zimmer and J-C. Olivo-Marin,
Coupled parametric active contours, IEEE
Transactions on Pattern Analysis and Machine Intelligence, 27, 11, November, 2005.[PubMed] [IEEE
Xplore]
- C. Zimmer, B. Zhang, S. Blazquez, E. Labruyère, F. Frischknecht, R. Ménard, N. Guillén, and J-C. Olivo-Marin, "Automated cell
tracking tools for quantitative motility studies", American Institute of Physics
Conference Proceedings, vol. 755,
pp. 177-184, ISIS
International Symposium on Interdisciplinary Science, Natchitoches,
Louisiana (USA), 6-8 October 2004. [AIP abstract]
- B. Zhang,
C. Zimmer, J-C. Olivo-Marin : Tracking fluorescent cells with coupled
geometric active contours, Proc.
IEEE International Symposium on Biomedical Imaging (ISBI 2004), pp.
1223-1226, 2004.[IEEE Xplore]
- C. Zimmer, E. Labruyère, V. Meas-Yedid, N.
Guillén and J-C. Olivo-Marin. Segmentation and
tracking of migrating cells in videomicroscopy
with parametric active contours: a tool for cell-based drug testing, IEEE Transactions on Medical Imaging,
vol. 21, no. 10, 2002.[PubMed] [IEEE
Xplore]
Deconvolution
- N. Dey, L. Blanc-Feraud,
C. Zimmer, Z. Kam, P. Roux, J-C. Olivo-Marin,
and J. Zerubia, Richardson-Lucy algorithm with
Total Variation Regularization for 3D Confocal
Microscope Deconvolution, Microscopy Research and Techniques, Apr 3, 69 (4), pp. 260-266, 2006. [PubMed]
- N. Dey, L. Blanc-Féraud, C. Zimmer, Z. Kam,
J.-C. Olivo-Marin and J. Zerubia, A deconvolution method for confocal
microscopy with total variation regularization, Proc. IEEE International Symposium on Biomedical Imaging (ISBI
2004), pp. 476-479, 2004. [IEEE
Xplore]
Biology
- Cabal, G., Genovesio, A.,
Rodriguez-Navarro, S., Zimmer, C., Gadal, O., Lesne,
A., Buc, H., Feuerbach-Fournier,
F., Olivo-Marin, J.-C., Hurt, E.C., and Nehrbass, U. SAGA interacting
factors confine sub-diffusion of transcribed genes to the nuclear
envelope. Nature, 441, 770-3, 2006. [PubMed]
- Blazquez S, Zimmer C, Guigon G, Olivo-Marin JC, Guillen
N, Labruyere E., Human tumor necrosis factor is a chemoattractant
for the parasite Entamoeba histolytica.,
Infect. Immun.,74 (2), 1407-11, 2006. [PubMed]
- E. Coudrier, F. Amblard, C. Zimmer, P. Roux, J-C. Olivo-Marin,
M-C. Rigothier and N. Guillén, Myosin II and the Gal-GalNAc
lectin play a crucial role in tissue invasion by
Entamoeba histolytica,
Cellular Microbiology, 7 (1),
19-27, 2005.[PubMed]
- F. Frischknecht, P. Baldacci, B.
Martin, C. Zimmer, S. Thiberge,
J-C. Olivo-Marin, S. Shorte, R. Ménard, Imaging movement of malaria parasites during
transmission by Anopheles mosquitoes, Cellular
Microbiology, 6 (7), 687-694, 2004.[PubMed]
- E. Labruyère, C. Zimmer, V. Galy,
J-C. Olivo-Marin,
and N. Guillén. EhPAK,
a member of the 21-activated kinase family, is
involved in the control of Entamoeba histolytica migration and phagocytosis,
Journal of Cell Science, 116, 61-71, 2003.[PubMed]
- V. Das, B. Nal, A. Roumier, V. Meas-Yedid, C. Zimmer, J-C. Olivo-Marin, P. Roux, P.
Ferrier, A. Dautry-Varsat, A. Alcover, Membrane-cytoskeleton interactions during the
formation of the immunological synapse and subsequent T-cell activation, Immunological Reviews, 189, 123-135,
2002.[PubMed]
Astrophysics
- K. Ferrière, C. Zimmer,
M. Blanc, Quasi-interchange modes and interchange instability in rotating
magnetospheres, Journal of
Geophysical Research, 106,
327-343, 2001.
- P. Louarn, B.H. Mauk, M.G.Kivelson, W.S. Kurth, A.
Roux, C. Zimmer, D.A. Gurnett, and D.J.
Williams, A multi-instrument study of a jovian magnetospheric disturbance, Journal of Geophysical Research, 106, 29883-29898, 2001.
- C. Zimmer, K.
K. Khurana, M.G. Kivelson,
Subsurface oceans on Europa and Callisto: constraints from Galileo magnetometer
observations, Icarus,
147, 329-347, 2000.[ScienceDirect]
- M.G. Kivelson, K.K. Khurana, C.T.
Russell, M. Volwerk, R.J. Walker, and C. Zimmer,
Galileo magnetometer measurements strengthen the case for a subsurface
ocean at Europa, Science, 289,
1340-1343, 2000.[PubMed]
- K. Ferrière, C. Zimmer, M. Blanc, Magnetohydrodynamic
waves and gravitational/centrifugal instability in rotating systems, Journal of Geophysical Research, 17, 17335-17356, 1999.
- M.G. Kivelson, K.K. Khurana, D.J.
Stevenson, L. Bennett, S. Joy, C.T. Russell, R.J. Walker,
C. Zimmer, and C. Polanskey, Europa and Callisto :
Induced or intrinsic fields in a periodically varying plasma environment, Journal of Geophysical Research, 104, 4609-4625, 1999.