Recherche / Départements scientifiques / Biologie cellulaire et infection / Unités et groupes / Unité Analyse d’images quantitative / Publications
Publications
Journals
1. Zhang, B., Zerubia, J., and Olivo-Marin, J.-C. (2007) Gaussian approximations of fluorescence microscope point-spread function models, Applied Optics, 46, 10, pp. 1819-1829
3. Glory, E., Derocle, G., Ollivier, N., Meas-Yedid, V., Stamon, G., Pinset, C., and Olivo-Marin, J.-C. (2007) An automatic image analysis approach to quantify stained cell cultures, Cellular and Molecular Biology, 53, 9, pp. 20-27
4. Arhel, N., Genovesio, A., Kim, K-A., Miko, S., Perret, E., Olivo-Marin, J.-C., Shorte, S. and Charneau, P. (2006) Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes, Nature Methods, 3, 10, pp. 817-824
5. Alonso, M., Viollet, C., Gabellec, M.M., Meas-Yedid, V, Olivo-Marin, J.-C., and Lledo, PM. (2006) Olfactory discrimination learning increases the survival of adult-born neurons in the olfactory bulb, Journal of Neuroscience, 26, 41, pp. 10508-10513.
6. Cabal, G., Genovesio, A., Rodriguez-Navarro, S., Zimmer, C., Gadal, O., Lesne, A., Buc, H., Feuerbach-Fournier, F., Olivo-Marin, J.-C., Hurt, E.C., and Nehrbass, U. (2006) SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope, Nature, 441, pp. 770-773
7. Mairey, E., Genovesio, A., Donnadieu, E., Bernard, C., Jaubert, F., Pinard, E., Seylaz, J., Olivo-Marin, J.-C., Nassif, X., and Dumenil, G. (2006) Cerebral microcirculation shear stress levels determine Neisseria meningitidis attachment sites along the blood-brain barrier, Journal of Experimental Medicine, 203, 8, pp. 1939-1950
8. Genovesio, A., Liedl, T., Emiliani, V., Parak, W., Coppey-Moisan, M. and Olivo-Marin, J.-C. (2006) Multiple particle tracking in 3D+t microscopy : method and application to the tracking of endocytozed Quantum Dots, IEEE Trans. Image Processing, 15, 5, pp. 1062-1070
9. Zimmer, C., Zhang, B., Dufour, A., Thébaud, A., Berlemont, S., Meas-Yedid, V., and Olivo-Marin, J.-C (2006) On the digital trail of mobile cells, IEEE Signal Processing Mag., 23, 3, pp. 54-62
10. Dey, N., Blanc-Feraud, L., Zimmer, C., Roux, P., Kam, Z., Olivo-Marin, J.-C., and Zerubia, J. (2006) Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution, Microscopy Research and Techniques, 69, 4, pp. 260-266
11. Blazquez, S., Zimmer, C, Guigon, G., Olivo-Marin, J.-C., Guillen, N., and Labruyere E. (2006) Human Tumor Necrosis Factor is a Chemoattractant for the Parasite Entamoeba histolytica, Infection and Immunity, 74, 2, pp. 1407-1411
12. Therizols, P., Fairhead, C., Cabal, GG., Genovesio, A., Olivo-Marin, J.-C., Dujon, B., and Fabr,e E. (2006) Telomere tethering at the nuclear periphery is essential for efficient DNA double strand break repair in subtelomeric region, Journal of Cell Biology, 172, 2, pp. 189-199
13. Meas-Yedid, V., Servais, A., Noël, L.H., Brousse, N., Patey, N., Landais, P., Kreis, H., Olivo-Marin, J.-C., and Morelon, E. (2006) L’apport des techniques de quantification de la fibrose pour l’examen anatomopatholoqgiue en transplantation rénale, Le Courrier de la Transplantation, 6, pp. 86-92
14. Zimmer, C. and Olivo-Marin, J.-C (2005) Coupled parametric active contours, IEEE Trans. Pattern Analysis and Machine Intelligence, 27, 11, pp. 1838-1842
15. Dufour, A., Shinin, V., Tajbakhsh, S., Guillén, N., Olivo-Marin, J.-C. and Zimmer, C. (2005) Segmenting and tracking fluorescent cells in 4D microscopy with coupled active surfaces, IEEE Trans. Image Processing, 14, 9, pp. 1396-1410
16. Peltekian, C., Gordien, E., Garreau, F., Meas-Yedid, V., Soussan, P., Willams, V., Chaix, M.-L., Olivo-Marin, J.-C., Bréchot, C., and Kremsdorf, K. (2005) Human MxA protein participates to the interferon-related inhibition of hepatitis B virus replication in female transgenic mice, Journal of Hepatology, 43, 6, pp. 965-972
17. Lemasson, M., Saghatelyan, A., Olivo-Marin, J.-C., and Lledo, P.-M. (2005) Neonatal and adult neurogenesis provide two distinct populations of newborn neurons to the mouse olfactory bulb, Journal of Neuroscience, 25, pp. 6816-6825
18. Coudrier, E., Amblard, F., Zimmer, C., Olivo-Marin, J.-C., and Guillen, N. (2005) Myosin II and the Gal-GalNAc lectin play a crucial role in tissue invasion by Entamoeba histolytica, Cellular Microbiology, 7, 1, pp. 19-27
19. Bougnères, L., Girardin, S.E., Weed, S.A., Karginov, A.V., Olivo-Marin, J.-C., Parsons, J.T., Sansonetti, P.J., Tran Van Nhieu, G. (2004) Cortactin and Crk cooperate to trigger actin polymerization during Shigella invasion of epithelial cells, Journal of Cell Biology, 166, pp. 225-235
20. Frishneck, F., Baldacci, P., Martin, B., Zimmer, C., Thiberge, S., Olivo-Marin, J.-C., Shorte, S.L., and Ménard, R. (2004) Imaging movement of malaria parasites during transmission by Anopheles mosquitoes, Cellular Microbiology, 6, 7, pp.687-694
21. Fernandez, M.I., Pedron, T., Tournebize, R., Olivo-Marin, J.-C., Sansonetti, P., and Phalipon, A. (2003) Anti-inflammatory role for intracellular dimeric immunoglobulin A by neutralization of lipopolysaccharide in epithelial cells, Immunity, 18, 6, pp. 739-749
22. Fourgeaud, L, Bessis, A.S., Rossignol, F, Pin, JP, Olivo-Marin, J.-C., Hemar, A.(2003) The metabotropic glutamate receptor mGluR5 is endocytosed by a clathrin independent pathway, Journal of Biological Chemistry, 278, 14, pp. 12222-12230
23. Labruyere, E, Zimmer, C, Galy, V, Olivo-Marin, J.-C., Guillen, N. (2003) EhPAK, a member of the p21-activated kinase family, is involved in the control of Entamoeba histolytica migration and phagocytosis, Journal of Cell Science, 116, 1, pp.61-71
24. Zimmer, C., Labruyère, E., Meas-Yedid, V., Guillén, N. and Olivo-Marin, J.-C. (2002) Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours : a tool for cell-based drug testing, IEEE Trans. on Medical Imaging, 21, 10, pp. 1212-1221
25. Olivo-Marin, J.-C. (2002) Extraction of spots in biological images using multiscale products, Pattern Recognition, 35, 9, pp. 1989-1996
26. Das, V, Nal, B, Roumier, A, Meas-Yedid, V, Zimmer, C, Olivo-Marin, J.-C., Roux, P, Ferrier, P, Dautry-Varsat, A, Alcover, A (2002) Membrane-cytoskeleton interactions during the formation of the immunological synapse and subsequent T-cell activation, Immunological Reviews, 189, 11, pp. 123-35.
27. Figueiredo, L., Freitas-Junior, L., Olivo-Marin, J.-C.,.and Scherf, A. (2002) A central role for Plasmodium falciparum subtelomeric regions in spatial positioning and telomere length regulation, EMBO Journal, 21, 4, pp. 815-824
28. Feuerbach, F., Galy, V., Treelles-Stricken, E., Fromont-Racine, M.,Jacquier, A., Gilson, E., Olivo-Marin, J.-C., Scherthan, H., and Nerhbass,U. (2002) Yeast telomers control transcriptional states by spatial positioning, Nature Cell Biology, 4, pp 214-221
29. Roumier, A., Olivo-Marin, J.-C., Arpin, M., Michel, F., Martin, M., Mangeat, P., Acuto, O., Dautry-Varsat, A. and Alcover, A. (2001) The membrane-microfilament linker ezrin is involved in the formation of the immunological synapse and in T cell activation, Immunity, 15, pp. 715-728
30. Murphy, C., Saffrich, R, Olivo-Marin, J.-C., Giner, A., Ansorge, W., Fotsis, T. and Zerial, M. (2001) Dual function of RhoD in vesicular movement and cell motility, European Journal of Cell Biology, 80, 6, pp. 391-398
31. Galy, V., Olivo-Marin, J.-C., Scherthan, H., Doyle, V., Rascalou, N.and Nerhbass, U. (2000) Nuclear pore complexes in the organization of silent telomeric chromatin, Nature, 403, pp. 108-112
32. Voigt, H., Olivo, J.-C., Sansonetti, P., and Guillen, N. (1999) Myosin IB from Entamoeba histolytica is involved in phagocytosis of human erythrocytes, Journal of Cell Science , 112, 8, pp. 1191-1201
2. Servais, A., Meas-Yedid, V., Buchler, M., Morelon, E., Olivo-Marin, J.-C., Lebranchu, Y., Legendre, C. and Thervet, E. (2007) Quantification of interstitial fibrosis by image analysis on routine renal biopsy in patients receiving cyclosporine, Transplantation, 84, 12, pp. 1595-1601
3. Glory, E., Derocle, G., Ollivier, N., Meas-Yedid, V., Stamon, G., Pinset, C., and Olivo-Marin, J.-C. (2007) An automatic image analysis approach to quantify stained cell cultures, Cellular and Molecular Biology, 53, 9, pp. 20-27
4. Arhel, N., Genovesio, A., Kim, K-A., Miko, S., Perret, E., Olivo-Marin, J.-C., Shorte, S. and Charneau, P. (2006) Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes, Nature Methods, 3, 10, pp. 817-824
5. Alonso, M., Viollet, C., Gabellec, M.M., Meas-Yedid, V, Olivo-Marin, J.-C., and Lledo, PM. (2006) Olfactory discrimination learning increases the survival of adult-born neurons in the olfactory bulb, Journal of Neuroscience, 26, 41, pp. 10508-10513.
6. Cabal, G., Genovesio, A., Rodriguez-Navarro, S., Zimmer, C., Gadal, O., Lesne, A., Buc, H., Feuerbach-Fournier, F., Olivo-Marin, J.-C., Hurt, E.C., and Nehrbass, U. (2006) SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope, Nature, 441, pp. 770-773
7. Mairey, E., Genovesio, A., Donnadieu, E., Bernard, C., Jaubert, F., Pinard, E., Seylaz, J., Olivo-Marin, J.-C., Nassif, X., and Dumenil, G. (2006) Cerebral microcirculation shear stress levels determine Neisseria meningitidis attachment sites along the blood-brain barrier, Journal of Experimental Medicine, 203, 8, pp. 1939-1950
8. Genovesio, A., Liedl, T., Emiliani, V., Parak, W., Coppey-Moisan, M. and Olivo-Marin, J.-C. (2006) Multiple particle tracking in 3D+t microscopy : method and application to the tracking of endocytozed Quantum Dots, IEEE Trans. Image Processing, 15, 5, pp. 1062-1070
9. Zimmer, C., Zhang, B., Dufour, A., Thébaud, A., Berlemont, S., Meas-Yedid, V., and Olivo-Marin, J.-C (2006) On the digital trail of mobile cells, IEEE Signal Processing Mag., 23, 3, pp. 54-62
10. Dey, N., Blanc-Feraud, L., Zimmer, C., Roux, P., Kam, Z., Olivo-Marin, J.-C., and Zerubia, J. (2006) Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution, Microscopy Research and Techniques, 69, 4, pp. 260-266
11. Blazquez, S., Zimmer, C, Guigon, G., Olivo-Marin, J.-C., Guillen, N., and Labruyere E. (2006) Human Tumor Necrosis Factor is a Chemoattractant for the Parasite Entamoeba histolytica, Infection and Immunity, 74, 2, pp. 1407-1411
12. Therizols, P., Fairhead, C., Cabal, GG., Genovesio, A., Olivo-Marin, J.-C., Dujon, B., and Fabr,e E. (2006) Telomere tethering at the nuclear periphery is essential for efficient DNA double strand break repair in subtelomeric region, Journal of Cell Biology, 172, 2, pp. 189-199
13. Meas-Yedid, V., Servais, A., Noël, L.H., Brousse, N., Patey, N., Landais, P., Kreis, H., Olivo-Marin, J.-C., and Morelon, E. (2006) L’apport des techniques de quantification de la fibrose pour l’examen anatomopatholoqgiue en transplantation rénale, Le Courrier de la Transplantation, 6, pp. 86-92
14. Zimmer, C. and Olivo-Marin, J.-C (2005) Coupled parametric active contours, IEEE Trans. Pattern Analysis and Machine Intelligence, 27, 11, pp. 1838-1842
15. Dufour, A., Shinin, V., Tajbakhsh, S., Guillén, N., Olivo-Marin, J.-C. and Zimmer, C. (2005) Segmenting and tracking fluorescent cells in 4D microscopy with coupled active surfaces, IEEE Trans. Image Processing, 14, 9, pp. 1396-1410
16. Peltekian, C., Gordien, E., Garreau, F., Meas-Yedid, V., Soussan, P., Willams, V., Chaix, M.-L., Olivo-Marin, J.-C., Bréchot, C., and Kremsdorf, K. (2005) Human MxA protein participates to the interferon-related inhibition of hepatitis B virus replication in female transgenic mice, Journal of Hepatology, 43, 6, pp. 965-972
17. Lemasson, M., Saghatelyan, A., Olivo-Marin, J.-C., and Lledo, P.-M. (2005) Neonatal and adult neurogenesis provide two distinct populations of newborn neurons to the mouse olfactory bulb, Journal of Neuroscience, 25, pp. 6816-6825
18. Coudrier, E., Amblard, F., Zimmer, C., Olivo-Marin, J.-C., and Guillen, N. (2005) Myosin II and the Gal-GalNAc lectin play a crucial role in tissue invasion by Entamoeba histolytica, Cellular Microbiology, 7, 1, pp. 19-27
19. Bougnères, L., Girardin, S.E., Weed, S.A., Karginov, A.V., Olivo-Marin, J.-C., Parsons, J.T., Sansonetti, P.J., Tran Van Nhieu, G. (2004) Cortactin and Crk cooperate to trigger actin polymerization during Shigella invasion of epithelial cells, Journal of Cell Biology, 166, pp. 225-235
20. Frishneck, F., Baldacci, P., Martin, B., Zimmer, C., Thiberge, S., Olivo-Marin, J.-C., Shorte, S.L., and Ménard, R. (2004) Imaging movement of malaria parasites during transmission by Anopheles mosquitoes, Cellular Microbiology, 6, 7, pp.687-694
21. Fernandez, M.I., Pedron, T., Tournebize, R., Olivo-Marin, J.-C., Sansonetti, P., and Phalipon, A. (2003) Anti-inflammatory role for intracellular dimeric immunoglobulin A by neutralization of lipopolysaccharide in epithelial cells, Immunity, 18, 6, pp. 739-749
22. Fourgeaud, L, Bessis, A.S., Rossignol, F, Pin, JP, Olivo-Marin, J.-C., Hemar, A.(2003) The metabotropic glutamate receptor mGluR5 is endocytosed by a clathrin independent pathway, Journal of Biological Chemistry, 278, 14, pp. 12222-12230
23. Labruyere, E, Zimmer, C, Galy, V, Olivo-Marin, J.-C., Guillen, N. (2003) EhPAK, a member of the p21-activated kinase family, is involved in the control of Entamoeba histolytica migration and phagocytosis, Journal of Cell Science, 116, 1, pp.61-71
24. Zimmer, C., Labruyère, E., Meas-Yedid, V., Guillén, N. and Olivo-Marin, J.-C. (2002) Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours : a tool for cell-based drug testing, IEEE Trans. on Medical Imaging, 21, 10, pp. 1212-1221
25. Olivo-Marin, J.-C. (2002) Extraction of spots in biological images using multiscale products, Pattern Recognition, 35, 9, pp. 1989-1996
26. Das, V, Nal, B, Roumier, A, Meas-Yedid, V, Zimmer, C, Olivo-Marin, J.-C., Roux, P, Ferrier, P, Dautry-Varsat, A, Alcover, A (2002) Membrane-cytoskeleton interactions during the formation of the immunological synapse and subsequent T-cell activation, Immunological Reviews, 189, 11, pp. 123-35.
27. Figueiredo, L., Freitas-Junior, L., Olivo-Marin, J.-C.,.and Scherf, A. (2002) A central role for Plasmodium falciparum subtelomeric regions in spatial positioning and telomere length regulation, EMBO Journal, 21, 4, pp. 815-824
28. Feuerbach, F., Galy, V., Treelles-Stricken, E., Fromont-Racine, M.,Jacquier, A., Gilson, E., Olivo-Marin, J.-C., Scherthan, H., and Nerhbass,U. (2002) Yeast telomers control transcriptional states by spatial positioning, Nature Cell Biology, 4, pp 214-221
29. Roumier, A., Olivo-Marin, J.-C., Arpin, M., Michel, F., Martin, M., Mangeat, P., Acuto, O., Dautry-Varsat, A. and Alcover, A. (2001) The membrane-microfilament linker ezrin is involved in the formation of the immunological synapse and in T cell activation, Immunity, 15, pp. 715-728
30. Murphy, C., Saffrich, R, Olivo-Marin, J.-C., Giner, A., Ansorge, W., Fotsis, T. and Zerial, M. (2001) Dual function of RhoD in vesicular movement and cell motility, European Journal of Cell Biology, 80, 6, pp. 391-398
31. Galy, V., Olivo-Marin, J.-C., Scherthan, H., Doyle, V., Rascalou, N.and Nerhbass, U. (2000) Nuclear pore complexes in the organization of silent telomeric chromatin, Nature, 403, pp. 108-112
32. Voigt, H., Olivo, J.-C., Sansonetti, P., and Guillen, N. (1999) Myosin IB from Entamoeba histolytica is involved in phagocytosis of human erythrocytes, Journal of Cell Science , 112, 8, pp. 1191-1201
International conferences with review committee
1. Zhang, B., Fahdili, J., Starck, J.-L. and Olivo-Marin, J.-C. (2007) Multiscale variance-stabilizing transform for mixed-Poisson-Gaussian processes and its applications in bioimaging, IEEE Intern. Conf. on Image Processing 2007, San Antonio, Sept. 2007
2. Berlemont, S., Bensimon, A. and Olivo-Marin, J.-C. (2007) Feature-Adapted Fast Slant Stack, IEEE Intern. Conf. on Image Processing 2007, San Antonio, Sept. 2007
3. Pankajakshan, P., Zhang, B., Blanc-F´eraud, L., Kam, Z., Olivo-Marin, J.-C., and Zerubia, J. (2007) Parametric Blind Deconvolution for Confocal Laser Scanning Microscopy, IEEE Intern. Conf. on Engineering in Biology and Medicine 2007, Lyon, August. 2007, pp. 6531-6534
4. Berlemont, S., Bensimon, A. and Olivo-Marin, J.-C. (2007) Detection of curvilinear objects in biological noisy images using Feature-Adapted Fast Slant Stack, SPIE, International Conference on Wavelets XII 2007, San Diego, August 2007
5. Berlemont, S., Bensimon, A. and Olivo-Marin, J.-C. (2007) Detection of Curvilinear objects in Noisy Image using Feature-Adapted Beamlet Transform, IEEE Intern. Conf. on Acoustics, Speech, and Signal Processing, ICASSP 2007, Honolulu, April 2007
6. Pécréaux, J., Zimmer, C. and Olivo-Marin, J.-C. (2006) Biophysicall active contours for cell tracking I : Tension and bending, IEEE Intern. Conf. on Image Processing 2006, Atlanta, Oct. 2006
7. Olivo-Marin, J.-C. (2006) An overview of image analysis in multidimensional biological microscopy, IEEE Intern. Conf. on Acoustics, Speech, and Signal Processing, ICASSP 2006, Toulouse, May 2006
8. Glory, E., Meas-Yedid, V., Pinset, C., Stamon, G., and Olivo-Marin, J.-C. (2006) Automated image-based screening of cell cultures for cell therapy, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2006, Arlington, April 2006, pp. 259-262
9. Zhang, B., Enninga, J., Olivo-Marin, J.-C., and Zimmer, C .(2006) Automated super-resolution detection of fluorescent rods in 2D, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2006, Arlington, April 2006, pp. 1296–1299
10. Zhang, B., Zerubia, J., and Olivo-Marin, J.-C. (2006) A study of Gaussian approximations of microscopic PSF, SPIE, 3D and Multidimensional Microscopy, San Jose, January 2006, 6090
11. Glory, E., Meas-Yedid, V., Pinset, C., Olivo-Marin, J.-C. and Stamon, G. (2005) A quantitative criterion to evaluate color segmentations application to cytological images, Advanced Concepts for Intelligent Vision Systems, ACIVS 2005, Antwerp, Belgium, September 20-23, 2005, pp. 227-232
12. Zimmer, C., Zhang, B., Blazquez, S. Labruyère, E. Frischknecht, F., Ménard, R., Guillén, N. and Olivo-Marin, J.-C. (2004) Automated cell tracking tools for quantitative motility studies, ISIS International Symposium On Interdisciplinary Science, Natchitoches, Louisiana (USA), 6-8 October 2004, AIP Conference Proceedings Vol. 755, pp. 177-184
13. Genovesio, A., Belhassine, Z. and Olivo-Marin, J.-C. (2004) Adaptive gating in gaussian bayesian multi-target tracking, IEEE Intern. Conf. on Image Processing 2004, Singapore, Oct. 2004
14. Meas-Yedid, V., Glory, E., Morelon, E., Pinset, C., Stamon, G. and Olivo-Marin, J.-C. (2004) Automatic color space selection for biological image segmentation, IAPR Intern. Conf. on Pattern Recogn. ICPR 2004 , Cambridge, Aug. 2004
15. Genovesio, A., and Olivo-Marin, J.-C. (2004) Split and merge data association filter for dense multi-target tracking, IAPR Intern. Conf. on Pattern Recogn. ICPR 2004 , Cambridge, Aug. 2004
16. Zhang, B., Zimmer, C., and Olivo-Marin, J.-C. (2004) Tracking fluorescent cells with coupled geometric active contours, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2004 , Arlington, April 2004, pp.476-479
17. Genovesio, A., Zhang, B. and Olivo-Marin, J.-C. (2004) Interacting multiple model based method to track moving fluorescent biological spots, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2004, Arlington, April 2004, pp. 1239-1242
18. Dey, N., Blanc-Fraud, L., Zimmer, C., Kam, Z., Olivo-Marin, J.-C. and Zerubia, J. (2004) A deconvolution method for confocal microscopy with total variation regularization, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2004, Arlington, April 2004, pp. 1223-1226
19. Genovesio, A., Zhang, B. and Olivo-Marin, J.-C. (2004) Suivi de multiples taches fluorescentes par interaction de differents modèles de mouvement en vidéomicroscopie, Congrès Reconnaissance des Formes et Intelligence Artificielle, RFIA 2004, Toulouse, janvier 2004
20. Genovesio, A., Zhang, B. and Olivo-Marin, J.-C. (2003) Tracking of multiple fluorescent biological objects in three dimensional video microscopy, IEEE Intern. Conf. on Image Processing 2003, Barcelona, Sept. 2003, I, pp. 1105-1108
21. Genovesio, A., and Olivo-Marin, J.-C. (2003) Tracking fluorescent spots in biological video microscopy, SPIE, 3D and Multidimensional Microscopy, San Jose, January 2003, 4964, pp. 100-111
22. Féral, M., Zimmer, C., and Olivo-Marin, J.-C. (2003) Cell tracking: explicit versus implicit active contour methods, SPIE, 3D and Multidimensional Microscopy, San Jose, January 2003, 4964, pp. 69-77
23. Zimmer, C., Labruyère, E., Meas-Yedid, V., Guillén, N. and Olivo-Marin, J.-C. (2002) Improving active contours for segmentation and tracking of motile cells in videomicroscopy, IAPR Intern. Conf. on Pattern Recogn. ICPR 2002, Québec, Aug. 2002, II, pp. 286-289
24. Meas-Yedid, V., Tilie, S. and Olivo-Marin, J.-C. (2002) Color image segmentation based on Markov Random Field Clustering for histological image analysis, IAPR Intern. Conf. on Pattern Recogn. ICPR 2002, Québec, Aug. 2002, I, pp. 796-799
25. Zimmer, C., Labruyère, E., Meas-Yedid, V., Guillén, N. and Olivo-Marin, J.-C. (2002) Quantitative analysis of cellular shape and motility parameters with improved active contours, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2002 , Whashington DC, July. 2002, pp. 859-862
26. Zimmer, C., Meas-Yedid, V., Glory, E., Labruyère, E., Guillén, N. and Olivo-Marin, J.-C. (2002) Analyse de la forme et du mouvement cellulaires par les contours actifs, Congrès Reconnaissance des Formes et Intelligence Artificielle, RFIA 2002, Angers, janvier 2002, II, pp. 435-442
27. Cuartero, G., Meas-Yedid, V., Galy, V., Nehrbass, U. and Olivo-Marin, J.-C. (2001) Three dimensional spot detection by multiscale analysis, IEEE Intern. Conf. on Image Processing 2001, Oct. 2001, I, pp. 317-320
28. Zimmer, C., Meas-Yedid, V., Labruyère, E., Guillen, N., and Olivo-Marin, J.-C. (2001)Active contours applied to the shape and motion analysis of amoeba, SPIE, Mathematical Modelling, Vision Geometry X, San Diego, August 2001, pp. 124-134
29. Meas-Yedid, V., Cloppet, F., Roumier, A., Alcover, A., Olivo-Marin, J.-C. and Stamon, G. (2001) Quantitative microscopic image analysis by active contours, Visual Interface, VI’2001, Ottawa, June 2001, pp. 277-284
30. Meas-Yedid, V., Zimmer, C. and Olivo-Marin, J.-C. (2001) Active contours for the motility analysis in biological microscopy images, Intern. Conf. on Image and Signal Processing, ICISP’2001, Morrocco, May 2001, pp. 230-239
31. Meas-Yedid, V. and Olivo-Marin, J.-C. (2000) Active contours for the movement and motility analysis of biological objects, IEEE Intern. Conf. on Image Processing 2000, I, pp. 172-175
2. Berlemont, S., Bensimon, A. and Olivo-Marin, J.-C. (2007) Feature-Adapted Fast Slant Stack, IEEE Intern. Conf. on Image Processing 2007, San Antonio, Sept. 2007
3. Pankajakshan, P., Zhang, B., Blanc-F´eraud, L., Kam, Z., Olivo-Marin, J.-C., and Zerubia, J. (2007) Parametric Blind Deconvolution for Confocal Laser Scanning Microscopy, IEEE Intern. Conf. on Engineering in Biology and Medicine 2007, Lyon, August. 2007, pp. 6531-6534
4. Berlemont, S., Bensimon, A. and Olivo-Marin, J.-C. (2007) Detection of curvilinear objects in biological noisy images using Feature-Adapted Fast Slant Stack, SPIE, International Conference on Wavelets XII 2007, San Diego, August 2007
5. Berlemont, S., Bensimon, A. and Olivo-Marin, J.-C. (2007) Detection of Curvilinear objects in Noisy Image using Feature-Adapted Beamlet Transform, IEEE Intern. Conf. on Acoustics, Speech, and Signal Processing, ICASSP 2007, Honolulu, April 2007
6. Pécréaux, J., Zimmer, C. and Olivo-Marin, J.-C. (2006) Biophysicall active contours for cell tracking I : Tension and bending, IEEE Intern. Conf. on Image Processing 2006, Atlanta, Oct. 2006
7. Olivo-Marin, J.-C. (2006) An overview of image analysis in multidimensional biological microscopy, IEEE Intern. Conf. on Acoustics, Speech, and Signal Processing, ICASSP 2006, Toulouse, May 2006
8. Glory, E., Meas-Yedid, V., Pinset, C., Stamon, G., and Olivo-Marin, J.-C. (2006) Automated image-based screening of cell cultures for cell therapy, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2006, Arlington, April 2006, pp. 259-262
9. Zhang, B., Enninga, J., Olivo-Marin, J.-C., and Zimmer, C .(2006) Automated super-resolution detection of fluorescent rods in 2D, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2006, Arlington, April 2006, pp. 1296–1299
10. Zhang, B., Zerubia, J., and Olivo-Marin, J.-C. (2006) A study of Gaussian approximations of microscopic PSF, SPIE, 3D and Multidimensional Microscopy, San Jose, January 2006, 6090
11. Glory, E., Meas-Yedid, V., Pinset, C., Olivo-Marin, J.-C. and Stamon, G. (2005) A quantitative criterion to evaluate color segmentations application to cytological images, Advanced Concepts for Intelligent Vision Systems, ACIVS 2005, Antwerp, Belgium, September 20-23, 2005, pp. 227-232
12. Zimmer, C., Zhang, B., Blazquez, S. Labruyère, E. Frischknecht, F., Ménard, R., Guillén, N. and Olivo-Marin, J.-C. (2004) Automated cell tracking tools for quantitative motility studies, ISIS International Symposium On Interdisciplinary Science, Natchitoches, Louisiana (USA), 6-8 October 2004, AIP Conference Proceedings Vol. 755, pp. 177-184
13. Genovesio, A., Belhassine, Z. and Olivo-Marin, J.-C. (2004) Adaptive gating in gaussian bayesian multi-target tracking, IEEE Intern. Conf. on Image Processing 2004, Singapore, Oct. 2004
14. Meas-Yedid, V., Glory, E., Morelon, E., Pinset, C., Stamon, G. and Olivo-Marin, J.-C. (2004) Automatic color space selection for biological image segmentation, IAPR Intern. Conf. on Pattern Recogn. ICPR 2004 , Cambridge, Aug. 2004
15. Genovesio, A., and Olivo-Marin, J.-C. (2004) Split and merge data association filter for dense multi-target tracking, IAPR Intern. Conf. on Pattern Recogn. ICPR 2004 , Cambridge, Aug. 2004
16. Zhang, B., Zimmer, C., and Olivo-Marin, J.-C. (2004) Tracking fluorescent cells with coupled geometric active contours, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2004 , Arlington, April 2004, pp.476-479
17. Genovesio, A., Zhang, B. and Olivo-Marin, J.-C. (2004) Interacting multiple model based method to track moving fluorescent biological spots, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2004, Arlington, April 2004, pp. 1239-1242
18. Dey, N., Blanc-Fraud, L., Zimmer, C., Kam, Z., Olivo-Marin, J.-C. and Zerubia, J. (2004) A deconvolution method for confocal microscopy with total variation regularization, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2004, Arlington, April 2004, pp. 1223-1226
19. Genovesio, A., Zhang, B. and Olivo-Marin, J.-C. (2004) Suivi de multiples taches fluorescentes par interaction de differents modèles de mouvement en vidéomicroscopie, Congrès Reconnaissance des Formes et Intelligence Artificielle, RFIA 2004, Toulouse, janvier 2004
20. Genovesio, A., Zhang, B. and Olivo-Marin, J.-C. (2003) Tracking of multiple fluorescent biological objects in three dimensional video microscopy, IEEE Intern. Conf. on Image Processing 2003, Barcelona, Sept. 2003, I, pp. 1105-1108
21. Genovesio, A., and Olivo-Marin, J.-C. (2003) Tracking fluorescent spots in biological video microscopy, SPIE, 3D and Multidimensional Microscopy, San Jose, January 2003, 4964, pp. 100-111
22. Féral, M., Zimmer, C., and Olivo-Marin, J.-C. (2003) Cell tracking: explicit versus implicit active contour methods, SPIE, 3D and Multidimensional Microscopy, San Jose, January 2003, 4964, pp. 69-77
23. Zimmer, C., Labruyère, E., Meas-Yedid, V., Guillén, N. and Olivo-Marin, J.-C. (2002) Improving active contours for segmentation and tracking of motile cells in videomicroscopy, IAPR Intern. Conf. on Pattern Recogn. ICPR 2002, Québec, Aug. 2002, II, pp. 286-289
24. Meas-Yedid, V., Tilie, S. and Olivo-Marin, J.-C. (2002) Color image segmentation based on Markov Random Field Clustering for histological image analysis, IAPR Intern. Conf. on Pattern Recogn. ICPR 2002, Québec, Aug. 2002, I, pp. 796-799
25. Zimmer, C., Labruyère, E., Meas-Yedid, V., Guillén, N. and Olivo-Marin, J.-C. (2002) Quantitative analysis of cellular shape and motility parameters with improved active contours, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2002 , Whashington DC, July. 2002, pp. 859-862
26. Zimmer, C., Meas-Yedid, V., Glory, E., Labruyère, E., Guillén, N. and Olivo-Marin, J.-C. (2002) Analyse de la forme et du mouvement cellulaires par les contours actifs, Congrès Reconnaissance des Formes et Intelligence Artificielle, RFIA 2002, Angers, janvier 2002, II, pp. 435-442
27. Cuartero, G., Meas-Yedid, V., Galy, V., Nehrbass, U. and Olivo-Marin, J.-C. (2001) Three dimensional spot detection by multiscale analysis, IEEE Intern. Conf. on Image Processing 2001, Oct. 2001, I, pp. 317-320
28. Zimmer, C., Meas-Yedid, V., Labruyère, E., Guillen, N., and Olivo-Marin, J.-C. (2001)Active contours applied to the shape and motion analysis of amoeba, SPIE, Mathematical Modelling, Vision Geometry X, San Diego, August 2001, pp. 124-134
29. Meas-Yedid, V., Cloppet, F., Roumier, A., Alcover, A., Olivo-Marin, J.-C. and Stamon, G. (2001) Quantitative microscopic image analysis by active contours, Visual Interface, VI’2001, Ottawa, June 2001, pp. 277-284
30. Meas-Yedid, V., Zimmer, C. and Olivo-Marin, J.-C. (2001) Active contours for the motility analysis in biological microscopy images, Intern. Conf. on Image and Signal Processing, ICISP’2001, Morrocco, May 2001, pp. 230-239
31. Meas-Yedid, V. and Olivo-Marin, J.-C. (2000) Active contours for the movement and motility analysis of biological objects, IEEE Intern. Conf. on Image Processing 2000, I, pp. 172-175