Computational Imaging & Modeling Group
Selected publications
Wong, H., Marie-Nelly, H., Herbert, S., Carrivain, P., Koszul, R., Fabre, E., Zimmer, C.
A Predictive Computational Model of the Dynamic 3D Interphase Yeast Nucleus
Current Biology, 22, 20, 1881-1890 (2012).
M. Lelek, F. Di Nunzio, R. Henriques, P. Charneau, N. Arhel, and C. Zimmer
Superresolution imaging of HIV in infected cells with FlAsH-PALM
Proc Nat Acad Sci USA, 109 (22): 8564-9 (2012).
(highlighted in Nature Methods, Nature Biotechnology and New Scientist)
Chromosome arm length and nuclear constraints determine the dynamic relationship of yeast subtelomeres
Proc Nat Acad Sci USA, 107, 5, 2025-30 (2010).
3D real-time photoactivation nanoscopy image processing in ImageJ.
Nature Methods, 7, 339 - 340 (2010).
[Associated software and website]
Berger, A.B., Cabal, G.G., Fabre, E., Duong, T., Buc, H., Nehrbass, U., Olivo-Marin, J.C., Gadal, O., and Zimmer, C.
High-resolution statistical mapping reveals gene territories in live yeast
Nature Methods 5, 1031 - 1037 (2008).
[Associated software and website]
Other publications
S. Herbert, H. Soares, C. Zimmer, R. Henriques
C. Zimmer
From microbes to numbers: extracting meaningful quantitative data from images
Cellular Microbiology (2012), in press
Cournac A, Marie-Nelly H, Marbouty M, Koszul R, Mozziconacci J.
Normalization of a chromosomal contact map.
BMC Genomics. 2012 Aug 30;13(1):436.
S. Ehsani, J. C. Santos, C. D. Rodrigues, R. Henriques, L. Audry, C. Zimmer, P. Sansonetti, G. Tran Van Nhieu, J. Enninga
Hierarchies of host factor dynamics at the entry site of Shigella flexneri during host cell invasion
Infection and Immunity, Published ahead of print 23 April 2012
Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function.
Nature. 2012 Apr 11; 484(7393): 251-5.
Herbert S, Henriques R.
Enhanced epifluorescence microscopy by uniform and intensity optimized illumination.
Cytometry A. 2012 Apr;81(4):278-80.
C. Zimmer and E. Fabre
Principles of chromosomal organization: lessons from yeast.
J. Cell Biol., vol. 192 no. 5 723-733 (2011).
Izeddin I, Specht CG, Lelek M, Darzacq X, Triller A, Zimmer C and Dahan M
Super-Resolution Dynamic Imaging of Dendritic Spines Using a Low-Affinity Photoconvertible Actin Probe.
PLoS ONE 6(1): e15611 (2011)
Henriques R, Griffiths C, Hesper Rego E, Mhlanga MM.
PALM and STORM: unlocking live-cell super-resolution.
Biopolymers. 2011 May;95(5):322-31.
Kudlinski A, Lelek M, Barviau B, Audry L, Mussot A
Efficient blue conversion from a 1064 nm microchip laser in long photonic crystal fiber tapers for fluorescence microscopy.
Opt Express. 2010 Aug 2;18(16):16640-5.
Schauer K, Duong T, Bleakley K, Bardin S, Bornens M, Goud B.
Probabilistic density maps to study global endomembrane organization.
Nature Methods. 2010 Jul;7(7):560-6.
S. Mostowy, M. Bonazzi, M. A. Hamon, T. N. Tham, A. Mallet, M. Lelek, E. Gouin, C. Demangel, R. Brosch, C. Zimmer, A. Sartori, M. Kinoshita, M. Lecuit and P. Cossart
Entrapment of Intracytosolic Bacteria by Septin Cage-like Structures
Cell Host & Microbe, 8, 5, 433-444 (2010).
J.E. Chacón and T. Duong
Multivariate plug-in bandwidth selection with unconstrained pilot bandwidth matrices.
Test (2010) 19: 375–398
Wong H, Winn PJ, Mozziconacci J.
A molecular model of chromatin organisation and transcription: how a multi-RNA polymerase II machine transcribes and remodels the beta-globin locus during development.
Bioessays. 2009 Dec;31(12):1357-66.