(en cours d'acutalisation)


- Sauvage, V., J. Cheval, V. Foulongne, M. A. Gouilh, K. Pariente, J. C. Manuguerra, J. Richardson, O. Dereure, M. Lecuit, A. Burguiere, V. Caro, and M. Eloit. 2011. Identification of the first human Gyrovirus, a virus related to chicken anemia virus . J Virol 85:7948-7950. Pubmed

- Sabarly, V., O. Bouvet, J. Glodt, O. Clermont, D. Skurnik, L. Diancourt, D. De Vienne, E. Denamur, and C. Dillmann. 2011. The decoupling between genetic structure and metabolic phenotypes in Escherichia coli leads to continuous phenotypic diversity. J Evol Biol 24:1559-71.Pubmed

- Moutailler, S., B. Roche, J. M. Thiberge, V. Caro, F. Rougeon, and A. B. Failloux. 2011. Host alternation is necessary to maintain the genome stability of rift valley Fever virus. PLoS Negl Trop Dis 5:e1156.

- Mertens, E., A. Kajaste-Rudnitski, S. Torres, A. Funk, M. P. Frenkiel, I. Iteman, A. A. Khromykh, and P. Despres. 2011. Viral determinants in the NS3 helicase and 2K peptide that promote West Nile virus resistance to antiviral action of 2',5'-oligoadenylate synthetase 1b. Virology 399:176-85.

- Mahjoub-Messai, F., P. Bidet, V. Caro, L. Diancourt, V. Biran, Y. Aujard, E. Bingen, and S. Bonacorsi. 2011. Escherichia coli Isolates Causing Bacteremia via Gut Translocation and Urinary Tract Infection in Young Infants Exhibit Different Virulence Genotypes. J Infect Dis 203:1844-9.

- Leclercq, A., V. Chenal-Francisque, H. Dieye, T. Cantinelli, R. Drali, S. Brisse, and M. Lecuit. 2011. Characterization of the novel Listeria monocytogenes PCR serogrouping profile IVb-v1. Int J Food Microbiol 147:74-7.

- Grandadam, M., V. Caro, S. Plumet, J. M. Thiberge, Y. Souares, A. B. Failloux, H. J. Tolou, M. Budelot, D. Cosserat, I. Leparc-Goffart, and P. Despres. 2011. Chikungunya virus, southeastern France. Emerg Infect Dis 17:910-3.

- Coulibaly-N'Golo, G. M., E. Ekaza, B. Coulibaly, N. Aka, K. N'Guessan R, J. M. Thiberge, V. Caro, S. Brisse, and M. Bretin-Dosso. 2011. Multilocus VNTR analysis of Mycobacterium ulcerans strains isolated in Cote d'Ivoire. J Infect Dev Ctries 5:59-63.

- Clermont, O., M. Olier, C. Hoede, L. Diancourt, S. Brisse, M. Keroudean, J. Glodt, B. Picard, E. Oswald, and E. Denamur. 2011. Animal and human pathogenic Escherichia coli strains share common genetic backgrounds. Infect Genet Evol 11:654-62.

- Clermont, O., D. M. Gordon, S. Brisse, S. T. Walk, and E. Denamur. 2011. Characterization of the cryptic Escherichia lineages: rapid identification and prevalence. Environ Microbiol.

- Cheval, J., V. Sauvage, L. Frangeul, L. Dacheux, G. Guigon, N. Dumey, K. Pariente, C. Rousseaux, F. Dorange, N. Berthet, S. Brisse, I. Moszer, H. Bourhy, J. C. Manuguerra, M. Lecuit, A. Burguiere, V. Caro, and M. Eloit. 2011. Evaluation of High Throughput Sequencing for identifying known and unknown viruses in biological samples. J Clin Microbiol.

- Chenal-Francisque, V., J. Lopez, T. Cantinelli, V. Caro, C. Tran, A. Leclercq, M. Lecuit, and S. Brisse. 2011. Worldwide distribution of major clones of Listeria monocytogenes. Emerg Infect Dis 17:1110-12.

- Breurec, S., R. Michel, A. Seck, S. Brisse, D. Come, F. B. Dieye, B. Garin, M. Huerre, M. Mbengue, C. Fall, D. N. Sgouras, J. M. Thiberge, D. Dia, and J. Raymond. 2011. Clinical relevance of cagA and vacA gene polymorphisms in Helicobacter pylori isolates from Senegalese patients. Clin Microbiol Infect.

- Breurec, S., B. Guillard, S. Hem, S. Brisse, F. B. Dieye, M. Huerre, C. Oung, J. Raymond, T. Sreng Tan, J. M. Thiberge, S. Vong, D. Monchy, and B. Linz. 2011. Evolutionary History of Helicobacter pylori Sequences Reflect Past Human Migrations in Southeast Asia. PLoS One 6:e22058.

- Barbier, F., D. Lebeaux, D. Hernandez, A. S. Delannoy, V. Caro, P. Francois, J. Schrenzel, E. Ruppe, K. Gaillard, M. Wolff, S. Brisse, A. Andremont, and R. Ruimy. 2011. High prevalence of the arginine catabolic mobile element in carriage isolates of methicillin-resistant Staphylococcus epidermidis. J Antimicrob Chemother 66:29-36.


- Thiberge, J. M., C. Boursaux-Eude, P. Lehours, M. A. Dillies, S. Creno, J. Y. Coppee, Z. Rouy, A. Lajus, L. Ma, C. Burucoa, A. Ruskone-Foumestraux, A. Courillon-Mallet, H. De Reuse, I. G. Boneca, D. Lamarque, F. Megraud, J. C. Delchier, C. Medigue, C. Bouchier, A. Labigne, and J. Raymond. 2010. From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma. BMC Genomics 11:368.

- Leclercq, I., N. Berthet, C. Batejat, C. Rousseaux, P. Dickinson, I. G. Old, K. Kong, G. C. Kennedy, S. T. Cole, and J. C. Manuguerra. 2010. Use of consensus sequences for the design of high density resequencing microarrays: the influenza virus paradigm. BMC Genomics 11:586.

- Enache-Angoulvant, A., M. Bourget, S. Brisse, C. Stockman-Pannier, L. Diancourt, N. Francois, D. Rimek, C. Fairhead, D. Poulain, and C. Hennequin. 2010. Multilocus microsatellite markers for molecular typing of Candida glabrata: application to the analysis of genetic relationships between bloodstream and digestive isolates. J Clin Microbiol.

- Dacheux, L., N. Berthet, G. Dissard, E. C. Holmes, O. Delmas, F. Larrous, G. Guigon, P. Dickinson, O. Faye, A. A. Sall, I. G. Old, K. Kong, G. C. Kennedy, J. C. Manuguerra, S. T. Cole, V. Caro, A. Gessain, and H. Bourhy. 2010. Application of broad-spectrum resequencing microarray for genotyping rhabdoviruses. J Virol 84:9557-74.

- Casalegno, J. S., M. Bouscambert-Duchamp, V. Caro, I. Schuffenecker, M. Sabatier, A. Traversier, M. Valette, B. Lina, O. Ferraris, and V. Escuret. 2010. Oseltamivir-resistant influenza A(H1N1) viruses in south of France, 2007/2009. Antiviral Res 87:242-8.ct.

- Breurec, S., C. Fall, R. Pouillot, P. Boisier, S. Brisse, F. Diene-Sarr, S. Djibo, J. Etienne, M. C. Fonkoua, J. D. Perrier-Gros-Claude, C. E. Ramarokoto, F. Randrianirina, J. M. Thiberge, S. B. Zriouil, B. Garin, and F. Laurent. 2010. Epidemiology of methicillin-susceptible Staphylococcus aureus lineages in five major African towns: high prevalence of Panton-Valentine leukocidin genes. Clin Microbiol Infect.

- Berthet, N., A. Deletoile, V. Passet, G. C. Kennedy, J. C. Manuguerra, S. T. Cole, and S. Brisse. 2010. Reconstructed ancestral sequences improve pathogen identification using resequencing DNA microarrays. PLoS One 5:e15243.

 - Czeher C, Labbo R, Vieville G, Arzika I, Bogreau H, Rogier C, Diancourt L, Brisse S, Ariey F, Duchemin JB. 2010 Population genetic structure of Anopheles gambiae and Anopheles arabiensis in Niger. J Med Entomol. 47(3):355-66. PubMed

- Di Popolo A, Giannouli M, Triassi M, Brisse S, Zarrilli R. 2010 Molecular epidemiology of multidrug-resistant Acinetobacter baumannii strains in four Mediterranean countries using a multilocus sequence typing scheme. Clin Microbiol Infect.

- Diancourt L, Passet V, Nemec A, Dijkshoorn L, Brisse S. The population structure of Acinetobacter baumannii: expanding multiresistant clones from an ancestral susceptible genetic pool. PLoS One. 2010 Apr 7;5(4):e10034. PLoS One

- Breurec S, Zriouil SB, Fall C, Boisier P, Brisse S, Djibo S, Etienne J, Fonkoua MC, Perrier-Gros-Claude JD, Pouillot R, Ramarokoto CE, Randrianirina F, Tall A, Thiberge JM, Laurent F, Garin B. Epidemiology of methicillin-resistant Staphylococcus aureus lineages in five major African towns: emergence and spread of atypical clones. Clin Microbiol Infect. 2010 Mar 13. PMID: 20298267. PubMed

- Giannouli M, Cuccurullo S, Crivaro V, Di Popolo A, Bernardo M, Tomasone F, Amato G, Brisse S, Triassi M, Utili R, Zarrilli R. 2010. Molecular epidemiology of multidrug-resistant Acinetobacter baumannii in a tertiary care hospital in Naples, Italy, shows the emergence of a novel epidemic clone. J Clin Microbiol. Apr;48(4):1223-30.

- Coyne S, Guigon G, Courvalin P, Périchon B. Screening and quantification of the expression of antibiotic resistance genes in Acinetobacter baumannii with a microarray. Antimicrob Agents Chemother. 2010 Jan;54(1):333-40. PubMed PMID: 19884373

- Delétoile A, Passet V, Aires J, Chambaud I, Butel MJ, Smokvina T, Brisse S. 2010. Species delineation and clonal diversity in four Bifidobacterium species as revealed by multilocus sequencing. Res Microbiol. 2010 Mar;161(2):82-90.

- Elhani D, Bakir L, Aouni M, Passet V, Arlet G, Brisse S, Weill FX. 2010. Molecular epidemiology of extended-spectrum beta-lactamase-producing Klebsiella pneumoniae strains in a university hospital in Tunis, Tunisia, 1999-2005. Clin Microbiol Infect. 2010 Feb;16(2):157-64.


- Monfort, L., V. Caro, Z. Devaux, A. S. Delannoy, S. Brisse, and P. Sednaoui. 2009. First Neisseria gonorrhoeae genotyping analysis in France: identification of a strain cluster with reduced susceptibility to ceftriaxone. J Clin Microbiol 47:3540-5.

- Vincent Enouf, Maude Bouscambert-Duchamp,Martine Valette, Ana Burgière, Valérie Caro, Jean-Claude Manuguerra, Bruno Lina, Sylvie van der Werf. 2009. Le point sur le virus de la nouvelle grippe A(H1N1)v. BEH 29 juin 2009

- Bui, T. N., C. Verniere, P. Jarne, S. Brisse, F. Guerin, S. Boutry, L. Gagnevin, and O. Pruvost. 2009. From local surveys to global surveillance: three high-throughput genotyping methods for epidemiological monitoring of Xanthomonas citri pv. citri pathotypes. Appl Environ Microbiol 75:1173-84. PubMed

- Pagès F, Peyrefitte CN, Mve MT, Jarjaval F, Brisse S, Iteman I, Gravier P, Nkoghe D, Grandadam M. Aedes albopictus mosquito: the main vector of the 2007 Chikungunya outbreak in Gabon. PLoS ONE. 2009;4(3):e4691.

- Bui Thi Ngoc, L., C. Verniere, K. Vital, F. Guerin, L. Gagnevin, S. Brisse, N. Ah-You, and O. Pruvost. 2009. Development of 14 minisatellite markers for the citrus canker bacterium, Xanthomonas citri pv. citri. Mol Ecol Resources 9:125-127.

- Brisse, S
., C. Fevre, V. Passet, S. Issenhuth-Jeanjean, R. Tournebize, L. Diancourt, and P. Grimont. 2009. Virulent clones of Klebsiella pneumoniae: Identification and evolutionary scenario based on genomic and phenotypic characterization. PLoS ONE. 2009;4(3):e4982.

- Ah-You, N., L. Gagnevin, P. A. Grimont, S. Brisse, X. Nesme, F. Chiroleu, L. Bui Thi Ngoc, E. Jouen, P. Lefeuvre, C. Verniere, and O. Pruvost. 2009. Polyphasic characterization of xanthomonads pathogenic to members of the Anacardiaceae and their relatedness to species of Xanthomonas. Int J Syst Evol Microbiol. 2009 Feb;59(Pt 2):306-18. PMID: 19196770 [PubMed - in process] PubMed

- Moodley Y, Linz B, Yamaoka Y, Windsor HM, Breurec S, Wu JY, Maady A, Bernhöft S, Thiberge JM, Phuanukoonnon S, Jobb G, Siba P, Graham DY, Marshall BJ, Achtman M. The Peopling of the Pacific from a Bacterial Perspective. Science. 2009 Jan  23;323(5913) : 527-530.PMID: 19164753 [PubMed - as supplied by publisher] PubMed

- Brisse, S., C. Pannier, A. Angoulvant, T. de Meeus, L. Diancourt, O. Faure, H. Muller, J. Peman, A. M. Viviani, R. Grillot, B. Dujon, C. Fairhead, and C. Hennequin. Accepted. Uneven distribution of mating types among genotypes of Candida glabrata from clinical samples. Eukaryot Cell. 2009 Mar;8(3):287-95. Epub 2009 Jan 16.PMID: 19151326 [PubMed - in process] full text

- Deletoile, A., D. Decre, S. Courant, V. Passet, J. Audo, P. Grimont, G. Arlet, and S. Brisse. Phylogeny and identification of Pantoea species and typing of Pantoea agglomerans strains by multilocus gene sequencing J. Clin Microbiol. 2009 Feb;47(2):300-10. Epub 2008 Dec 3. PMID: 19052179 [PubMed - indexed for MEDLINE] PubMed


- Brisse, S. 2008. L’espèce bactérienne: nécessaire, mais pas suffisante. [The bacterial species: necessary, but not sufficient]. Bull. Soc. Franç. Microbiol. 23:164-174.

- Jaureguy, F., L. Landraud, V. Passet, L. Diancourt, E. Frapy, G. Guigon, E. Carbonnelle, O. Lortholary, O. Clermont, E. Denamur, B. Picard, X. Nassif, and S. Brisse. Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains. BMC Genomics. 2008 Nov 26; 9 (1) : 560. PMID: 19036134 [Epub ahead of print] [PubMed - as supplied by publisher] full text

- Njamkepo, E., T. Cantinelli, G. Guigon, and N. Guiso. 2008. Genomic analysis and comparison of Bordetella pertussis isolates circulating in low and high vaccine coverage areas. Microbes Infect. Oct 17 PubMed

- S. Vimont, B. Mnif, C. Fevre and S. Brisse. 2008 Oct. Comparison of PFGE and multilocus sequence typing for analysis of Klebsiella pneumoniae isolates. J Med Microbiol ; 57: 1308-10. PMID: 18809566 PubMed

- Wirth, T., F. Hildebrand, C. Allix-Beguec, F. Wolbeling, T. Kubica, K. Kremer, D. van Soolingen, S. Rusch-Gerdes, C. Locht, S. Brisse, A. Meyer, P. Supply, and S. Niemann. 2008. Origin, Spread and Demography of the Mycobacterium tuberculosis Complex. PLoS Pathog 4:e1000160. full text

- Berthet N, Reinhardt AK, Leclercq I, van Ooyen S, Batéjat C, Dickinson P, Stamboliyska R, Old IG, Kong KA, Dacheux L, Bourhy H, Kennedy GC, Korfhage C, Cole ST, Manuguerra JC. Phi29 polymerase based random amplification of viral RNA as an alternative to random RT-PCR. BMC Mol Biol. 2008 Sep 4;9:77. PMID: 18771595 PubMed

- Ragon, M., T. Wirth, F. Hollandt, R. Lavenir, M. Lecuit, A. Le Monnier, and S. Brisse. 2008. A new perspective on Listeria monocytogenes evolution. PLoS Pathogens vol 4 (9): e1000146. full text

- Paauw A, Caspers MP, Schuren FH, Leverstein-van Hall MA, Delétoile A, Montijn RC, Verhoef J, Fluit AC. 2008. Genomic diversity within the Enterobacter cloacae complex. PLoS ONE. Aug 21;3(8):e3018. full text

- Natalang O, Bischoff E, Deplaine G, Proux C, Dillies MA, Sismeiro O, Guigon G, Bonnefoy S, Patarapotikul J, Mercereau-Puijalon O, Coppee JY, David PH. Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate. BMC Genomics. 2008 Aug 18;9(1):388. full text

- Bouchez V, Caro V, Levillain E, Guigon G, Guiso N. Genomic content of Bordetella pertussis clinical isolates circulating in areas of intensive children vaccination.
PLoS ONE. 2008 Jun 18;3(6):e2437. full text

- Blazquez S, Guigon G, Weber C, Syan S, Sismeiro O, Coppée JY, Labruyère E, Guillén N. Chemotaxis of Entamoeba histolytica towards the pro-inflammatory cytokine TNF is based on PI3K signalling, cytoskeleton reorganization and the Galactose/N-acetylgalactosamine lectin activity.Cell Microbiol. 2008 May 11. PubMed

- Guigon G,
Cheval J, Cahuzac R, Brisse S. MLVA-NET – a standardised web database for bacterial genotyping and surveillance. Euro Surveill. 2008;13(19):pii=18863 full text

- Nemec A, Krízová L, Maixnerová M, Diancourt L, van der Reijden TJ, Brisse S, van den Broek P, Dijkshoorn L. Emergence of carbapenem resistance in Acinetobacter baumannii in  the Czech Republic is associated with the spread of multidrug-resistant strains of European clone II.J Antimicrob Chemother. 2008 May 13. PubMed

- N.Berthet, P.Dickinson, I.Filliol, A K. Reinhardt, C. Batejat, T. Vallaeys, K A. Kong, C. Davies, W. Lee, S. Zhang, Y. Turpaz, B. Heym, G. Coralie, L. Dacheux, AM. Burguière, H. Bourhy, I G. Old, JC. Manuguerra, ST. Cole and GC. Kennedy. Massively parallel pathogen identification using high-density microarrays. Microbial Biotechnology (2008) 1(1), 79 86. full text

- J. Santi-Rocca, C. Weber, G. Guigon, O. Sismeiro, J. Y. Coppee, and N. Guillen. The lysine- and glutamic acid-rich protein KERP1 plays a role in Entamoeba histolytica liver abscess  pathogenesis. Cell Microbiol. 2008 Jan;10(1):202-17. PubMed


- Lecoeur, H., Buffet, P., Morizot, G., Goyard, S., Guigon, G., Milon, G., Lang, T. 2007. Optimization of Topical Therapy for Leishmania major Localized Cutaneous Leishmaniasis Using a Reliable C57BL/6 Model. PLoS Negl Trop Dis 1(2): e34. PubMed

- Brisse, S., I. Iteman, and I. Schuffenecker. 2007. Chikungunya outbreaks. New England J. Medicine 21:2650-2. pdf

- van Belkum, A., P. T. Tassios, L. Dijkshoorn, S. Haeggman, B. Cookson, N. K. Fry, V. Fussing, J. Green, E. Feil, P. Gerner-Smidt, S. Brisse, and M.  Struelens. 2007. Guidelines for the validation and application of typing methods for use in bacterial epidemiology. Clin Microbiol Infect 13 Suppl 3:1-46.PubMed


- Schuffenecker, I., I. Iteman, A. Michault, S. Murri , L. Frangeul, M.-C. Vaney, R. Lavenir, N. Pardigon, J.-M. Reynes, F. Pettinelli, L. Biscornet, L. Diancourt, S. Michel, S. Duquerroy, G. Guigon, M.-C. Frenkiel, A.-C. Bréhin, N. Cubito, P. Desprès, F. Kunst, F. A. Rey, H. Zeller, and S. Brisse. 2006. Genome microevolution of chikungunya viruses causing the Indian Ocean outbreak. PLoS Med 3:e263.

- V. Caro, D. Hot, G. Guigon, C. Hubans, M. Arrivé, G. Soubigou, G. Renauld-Mongénie, R. Antoine, C. Locht, Y. Lemoine, N. Guiso. Temporal analysis of French Bordetella pertussis isolates by comparative whole-genome hybridization.Microbes Infect. 2006 Jun 6. PubMed

- Blazquez, S., C. Zimmer, G. Guigon, J. C. Olivo-Marin, N. Guillen, and E. Labruyere. 2006. Human tumor necrosis factor is a chemoattractant for the parasite Entamoeba histolytica. Infect Immun 74:1407-11. PubMed

- Weber, C., G. Guigon, C. Bouchier, L. Frangeul, S. Moreira, O. Sismeiro, C. Gouyette, D. Mirelman, J. Y. Coppee, and N. Guillen. 2006. Stress by Heat Shock Induces Massive Down Regulation of Genes and Allows Differential Allelic Expression of the Gal/GalNAc Lectin in Entamoeba histolytica. Eukaryot Cell 5:871-5. PubMed


- Ralph, S. A., E. Bischoff, D. Mattei, O. Sismeiro, M. A. Dillies, G. Guigon, J. Y. Coppee, P. H. David, and A. Scherf. 2005. Transcriptome analysis of antigenic variation in Plasmodium falciparum--var silencing is not dependent on antisense RNA. Genome Biol 6:R93. PubMed

- Buffet, P. A., G. Milon, V. Brousse, J. M. Correas, B. Dousset, A. Couvelard, R. Kianmanesh, O. Farges, A. Sauvanet, F. Paye, M. N. Ungeheuer, C. Ottone, H. Khun, L. Fiette, G. Guigon, M. Huerre, O. Mercereau-Puijalon, and P. H. David. 2005. Ex-vivo perfusion of human spleens maintains clearing and processing functions. Blood. PubMed