| Extraction of Protein-Protein Interactions from Text |
| Orateur: Ulf Leser |
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Humboldt Universität zu Berlin Information Extraction, i.e., the automatic extraction of facts from scientific papers, has become an important topic in bioinformatics, given the enormous amount of new publications flooding researchers desks on a daily basis. The talk will give a short overview of the main applications and techniques in the field and report on recent results in extracting protein-protein interactions on a large scale. |
| Lieu: Salle Jules Bordet, rdc du bâtiment Metchnikoff - Le Vendredi 30 Juillet 2010 à 11 h 30 Contact: Benno Schwikowski (benno@pasteur.fr) |
| Identification and characterization of Cri1, a locus controlling mortality during Citrobacter rodentium infection of mice |
| Orateur: Samantha GRUENHEID, Assistant Professor |
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Department of Microbiology and Immunology,
McGill Life Sciences Complex Séminaire du Département de Biologie Cellulaire et Infection |
| Lieu: Amphithéâtre Jacques Monod, sous-sol bâtiment Jacques Monod - Le Lundi 30 Août 2010 à 12 h 00 Contact: Pascale Cossart et Serge Mostowy (serge.mostowy@pasteur.fr) |
| PHOSPHOINOSITIDE 4-KINASES AT THE CROSSROAD OF CELLULAR TRAFFICKING AND SIGNALING |
| Orateur: Tamas BALLA ,M.D., Ph.D |
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Head, Section on Molecular Signal Transduction
Program for Developmental Neuroscience,
NICHD, National Institutes of Health Séminaire du Département de Biologie Cellulaire et Infection Summary of research: Phosphorylation of phosphatidylinositol (PtdIns) at various positions on its inositol ring generates a variety of phosphoinositides (PIs). These minute amounts of phospholipids are arguably the most versatile regulatory molecules that control almost every function of a cell that involves cellular membranes. PtdIns 4-kinases (PI4Ks) catalyze the first step in the synthesis of polyPIs, and have been known for a long time as the activity required for the generation and maintenance of the plasma membrane pool of PIs, mainly PtdIns(4,5)P2. Studies in the last ten years have revealed the existence of four different genes encoding PI4Ks and established PtdIns4P as a regulatory molecule on its own right in addition to being a precursor for PtdIns(4,5)P2. Since PIs exert their effects in a highly compartmentalized manner often with short half lives and high turnover rates, new methods have been developed to visualize and manipulate PI dynamics in live cells. Our group has been conducting research on the regulatory roles of the individual PI4Ks and constantly pursues new avenues to learn more about compartmentalized PI regulation. In this presentation we will give an overview of the cellular trafficking and signaling processes controlled by PI4Ks and feature some of the new approaches that we developed to study the highly versatile and dynamic roles of PIs in cellular regulation. |
| Lieu: Amphithéâtre Jacques Monod, sous-sol bâtiment Jacques Monod - Le Lundi 6 Septembre 2010 à 12 h 00 Contact: Andrea Puhar et Philippe Sansonetti (andrea.puhar@pasteur.fr) |
| Etudes Structurales et fonctionnelles du complexe pr/E des virus de la fièvre jaune |
| Orateur: Eric Crampon |
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Université Paris VII - Denis Diderot - ED IViv Unité de Virologie Structurale, IP |
| Lieu: Salle Jules Bordet, rdc du bâtiment Metchnikoff - Le Mardi 7 Septembre 2010 à 14 h 00 Contact: Felix Rey (rey@pasteur.fr) |
| Rôle de l’immunité innée maternelle dans le contrôle de la transmission mère-enfant in utero du VIH-1 |
| Orateur: Romain MARLIN |
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Université Paris 7, Denis Diderot - Unité Régulation des Infections Rétrovirales |
| Lieu: Amphithéâtre Jacques Monod, sous-sol bâtiment Jacques Monod - Le Mercredi 8 Septembre 2010 à 14 h 30 Contact: Elisabeth Menu (elisabeth.menu@pasteur.fr) |
| Regulatory B cells update: more questions than answers |
| Orateur: Claudia MAURI |
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Centre For Rheumatology Research - University College London SEMINAIRE DU DEPARTEMENT D'IMMUNOLOGIE |
| Lieu: Salle Jules Bordet, rdc du bâtiment Metchnikoff - Le Vendredi 10 Septembre 2010 à 12 h 00 Contact: Richard Lo-Man et Claude Leclerc (richard.lo-man@pasteur.fr) |
| A microscopic view of macroscopic changes: how do subcellular forces shape embryos? |
| Orateur: Pierre-François LENNE |
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Institut de Biologie du Développement de Marseille-Luminy,
Université Aix-Marseille II, CNRS, UMR 6216,
Campus de Luminy case 907,
Publications : Séminaire du Département de Biologie Cellulaire et Infection |
| Lieu: Amphithéâtre Jacques Monod, sous-sol bâtiment Jacques Monod - Le Lundi 13 Septembre 2010 à 11 h 00 Contact: Sandrine Etienne-Manneville (sandrine.etienne-manneville@pasteur.fr) |
| Molecular dissection of early stages in autophagosomes biogenesis |
| Orateur: Dr. Zvulun (Zevi) ELAZAR |
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Department of Biological Chemistry Séminaire du Département de Biologie Cellulaire et Infection |
| Lieu: Amphithéâtre Jacques Monod, sous-sol bâtiment Jacques Monod - Le Mardi 14 Septembre 2010 à 12 h 00 Contact: Chiara Zurzolo (zurzolo@pasteur.fr) |
| " Nucleotidyl Cyclase Acivity of Bacterial "Adenylyl" Cyclase Toxins " |
| Orateur: Prof. Roland SEIFERT |
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Director, Institute of Pharmacology, Medical School of Hannover ( ** Séminaire du Département de Biologie Structurale et Chimie / DBSC ** ) |
| Lieu: Amphithéâtre Jacques Monod, sous-sol bâtiment Jacques Monod - Le Vendredi 17 Septembre 2010 à 12 h 00 Contact: Daniel Ladant (daniel.ladant@pasteur.fr) |
| Genome stability: Vertical and Horizontal Views |
| Orateur: Prof. Martin KUPIEC |
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Dept. of Molecular Microbiology & Biotechnology, Tel Aviv University, Israel. SÉMINAIRE DU DÉPARTEMENT GÉNOMES ET GÉNÉTIQUE Telomeres are essential for chromosomal stability and integrity, as they prevent chromosome ends from being recognized as double strand breaks. In somatic cells, telomerase activity is repressed; thus telomeres of all differentiated somatic cells and tissues shorten with replicative age and donor age, leading to a finite life span. When telomere size becomes shorter than a certain threshold length the cells senesce; telomere length regulation can thus be considered a tumor-suppressing mechanism. Conversely, reactivation of telomerase in cultured cells results in extended life span leading to their apparent immortalization. Thus, deciphering how telomere length is monitored is critical to our understanding of the regulatory and signaling mechanisms controlling cellular life span. We have carried out a systematic, genome-wide search for genes that, when mutated, affect telomere length. Our efforts have uncovered a large number (~350) of such genes, which we call TLM (Telomere Length Maintenance) genes. We are currently carrying out small-scale and large-scale experiments to organize the TLM genes into functional categories. Both vertical (molecular biology) and horizontal (systems biology) strategies for understanding telomere length maintenance and signal transduction integration will be presented. In addition, we are studying the effect that external stresses have on telomere length. Our results have very significant medical implications concerning our ability to control aging and to fight cancer. |
| Lieu: Salle Jean-Paul Aubert, rdc du bâtiment Fernbach - Le Lundi 20 Septembre 2010 à 10 h 30 Contact: Emmanuelle FABRE (emmanuelle.fabre@pasteur.fr) |
| Neglected Protozoan Diseases |
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Prevention, Treatment and Control of Leishmaniasis, Trypanosomiasis and Chagas disease |
| Lieu: Institut Pasteur - Le Vendredi 24 Septembre 2010 Contact: Chrystèle Blin (cblin@pasteur.fr) http://www.pasteur.fr/eu-conference-neprodi (in english) |
| Decoding Human Epigenomes |
| Orateur: Keji ZHAO |
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Immunology Center - National Heart, Lung and Blood Institute, NIH - Bethesda SEMINAIRE DU DEPARTEMENT D'IMMUNOLOGIE |
| Lieu: Salle Jules Bordet, rdc du bâtiment Metchnikoff - Le Vendredi 24 Septembre 2010 à 12 h 00 Contact: Lars Rogge (lrogge@pasteur.fr) |
| Post-Translational Modifications: Biophysics and Evolution |
| Orateur: Dr Koby LEVY |
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The Weizmann Institute of Science Séminaire du Département de Biologie Cellulaire et Infection Co-Invité par le Conseil Pasteur-Weizmann Summary of research: Post-translational modifications (PTMs) are ubiquitous in the cell and well acknowledged as a means to regulate the function of proteins and provide a mechanism for increasing the diversity of protein structures. It is often believed that PTMs regulate protein activity by changing the protein surface and introducing new functional groups that act as a signaling tag for binding to other molecules. We propose that PTMs may also control a protein function by modulating the protein biophysical characteristics. PTMs, therefore, can enrich the repertoire of protein characteristics beyond that dictated by their sequence and can be viewed as an economical way to introduce larger diversity to the proteins encoded in the genome. In our research, we focus on the effect of glycosylation [1, 2] and ubiquitination [3] on the biophysical properties of proteins. It is likely that PTMs affect the protein energy landscapes (by affecting the enthalpy or entropy of the folded or the unfolded states) in a way that supports their bioactivity. Using computational and theoretical approaches we show that PTM may modulate the protein characteristics such as thermodynamic stability, kinetics, local dynamics, and structure and some of these new characteristics are likely to be coupled with the function associated with that particular PTM. Understanding the cross-talks between the protein and the conjugates at the molecular level may assist in tailoring the biophysical properties of proteins in general and modulating their cellular function.
Publications: 2. Dalit Shental and Yaakov Levy, Folding of glycoproteins: toward understanding the biophysics of the glycosylation code, Current Opinion Structural Biology, 19, 524-533, (2009). 3. Tzachi Hagai and Yaakov Levy, Ubiquitin serves not only as a tag, but also assists degradation by inducing protein unfolding, Proc. Natl. Acad. Sci. USA, 107, 2001-2006, (2010). |
| Lieu: Salle 014-015, rdc du bâtiment Lwoff - Le Mercredi 29 Septembre 2010 à 12 h 00 Contact: Nancy Guillén (nguillen@pasteur.fr) |
| Mechanisms of axonal guidance and degeneration |
| Orateur: Dr. Avraham YARON |
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The Weizmann Institute of Science Séminaire du Département de Biologie Cellulaire et Infection Co-Invité par le Conseil Pasteur-Weizmann |
| Lieu: Amphithéâtre Jacques Monod, sous-sol bâtiment Jacques Monod - Le Lundi 11 Octobre 2010 à 12 h 00 Contact: Nancy Guillén (nguillen@pasteur.fr) |
| 20ème Journée d'Ethique Médicale Maurice RAPIN |
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Auditorium du CIS |
| Lieu: Institut Pasteur - Le Mardi 9 Novembre 2010 http://www.institutmauricerapin.org/s2/article.php3?id_article=54 (en français) |
| 8th Louis Pasteur Conference |
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Nosocomial or hospital-acquired infections are increasingly recognized as a major threat in the complex environment of modern hospitals. In spite of efforts aimed at rationalizing the construction of care-delivery structures, implementing demanding hygiene standards among medical personnel, and achieving controlled use of antibiotics, a significant percentage of hospitalized patients still remain concerned by nosocomial infections. Due to the frequent severity of the cases, these infections collectively represent a huge burden on the health system. The complexity of hospital infrastructures, in particular the air and water delivery systems, the invasive medical and surgical procedures, the increasing number of immunosuppressed patients and the aging of the populations are just some of the factors that contribute to the infectious risk in hospitals. The 8th Louis Pasteur Conference (CLP8) will overview the major features of nosocomial infections, such as the mechanisms of microbial transmission, the establishment of infections, the antibiotic resistance capacities of microbe communities, the unbalance between pathogenic and commensal microorganisms upon immunosuppression, and the occurrence of infectious catastrophes such as septic shock. The goal of the Conference is to integrate, in a multidisciplinary approach, the most recent epidemiological concepts with up to date molecular and cellular analysis of the pathogenesis of nosocomial microbes. CLP8 should be a unique opportunity to understand how research can help controlling the threat of nosocomial infections. |
| Lieu: Institut Pasteur - Du Mercredi 17 Novembre 2010 au Vendredi 19 Novembre 2010 Contact: Chrystèle Blin (cblin@pasteur.fr) http://www.pasteur.fr/clp8 (en français) http://www.pasteur.fr/clp8 (in english) |
| Biofilms in Nosocomial Fungal Infections |
| Lieu: Institut Pasteur - Du Lundi 31 Janvier 2011 au Mardi 1 Février 2011 http://www.sfm.asso.fr/congres/congresfm.php?ok=0&co=136&deb=1&pa=&lieu=0&datc=1&ti=0 (en français) |
Liste mise à jour le Jeudi 29 Juillet 2010 à 10 h 45