Some referecences

Observation (dating from 21/08/2000): This bibliography is far from being complete. All participants are quite welcome to send me other references should they wish to (or pointers to programs or web pages). Just send them to me at the address: Thanks in advance.

Bachellerie J. P., Cavaillé J., Qu L. H. (2000) Nucleotide modifications of eukaryotic rRNAs : the world of small nucleolar RNAs revisited. In Ribosome : Structure, function, antibiotics and cellular interactions, Garrett R., Douthwaite S., Liljas A., Matheson A., Moore P. B., Noller H. (eds), ASM Press, pages 191-203.

Chen J.-H., Le S.-Y., Shapiro B., Currey K. M. and Maizel J. V. Jr. (1990) A computational procedure for assessing the significance of RNA secondary structure. Comput. Appl. Biosci., 6:7-18.

Chen J.-H., Le S.-Y., and Maizel J. V. (2000) Prediction of common secondary structures of RNAs: A genetic algorithm approach. Nucleic Acids Res. 28(4):991-999.

Chen S.-L., Le S.-Y., Newton D. L., Maizel J. V. Jr., and Rybak S. M. (2000) A gender specific mRNA encoding a cytotoxic ribonuclease contains a 3'UTR of unusual length and structure. Nucleic Acis Res. 28(12):2375-2382.

Derreumaux P. (1999) From polypeptide sequences to structures using Monte Carlo simulations and an optimized potential. J. Chem. Phys. 111:2301-2310.

Derreumaux P. (2000) Predicting helical hairpins from sequences by Monte Carlo simulations. J. Comput. Chem. 21:582-589.

Derreumaux P. (2000) Generating ensemble averages for small proteins from extended conformations by Monte Carlo simulations. Phys. Rev. Lett. 85:206-209.

Gaspin C., Cavaille J., Erauso G., Bachellerie J. P. (2000) Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessonsfrom the Pyrococcus genomes. J. Mol. Biol. 297:895-906.

Jonassen I., Eidhammer I., Taylor W. R. (1999) Discovery of local packing motifs in protein structures. Proteins 34:206-219.

Knudsen B., Hein J. (1999) RNA Secondary Structure Prediction Using Stochastic Context-Free Grammars and Evolutionary History. Bioinformatics 15:446-454.

Le S.-Y., Chen J.-H., Currey K. M. and Maizel J. V. Jr. (1988) A program for predicting significant RNA secondary structures. Comput. Appl. Biosci. 4:153-159.

Le S.-Y., Chen K.-H., Braun M. J., Gonda M. A. and Maizel J. V. Jr. (1988) Stability of RNA stem loop structure and distribution of non-random structure in the human immunodeficiency virus (HIV-1). Nucleic Acids Res. 16:5153-5168.

Le S.-Y., Chen J.-H., Chatterjee D. and Maizel J.V. Jr. (1989) Sequence divergence and open regions of RNA secondary structures in the envelope regions of the seventeen human immunodeficiency virus isolates. Nucleic Acids Res. 17:3275-3288.

Le S.-Y., Chen J.-H. and Maizel J. V. Jr. (1990) Efficient searches for unusual folding regions in RNA sequences. in Sarma R. H. and Sarma M. H. (eds) Proceedings of the 6th Conversations in Biomolecular Stereodynamics 1:127-136, Adenine Press, New York.

Le S.-Y. and Maizel J. V. Jr. (1998) Evolution of a common structural core in the internal ribosome entry sites of picornavirus. Virus Genes 16(1):25-38.

Malim M. H., Hauber J., Le S.-Y., Maizel J. V. Jr. and Cullen B. R. (1989) The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA. Nature 338:254-257.

Other papers by A. K. Mazur (no titles, sorry), are :

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