Publications

Jean-Christophe OLIVO-MARIN - Quantitative Image Analysis

1. Pop, S., Dufour, A., Le Garrec, J.-F., Ragni, C.V., Cimper, C., Meilhac, S.M., and Olivo-Marin, J.-C. (2013) Extracting 3D cell parameters from dense tissue environments: Application to the development of the mouse heart, Bioinformatics, doi: 10.1093/bioinformatics/btt027.

 

2. de Chaumont F, Dallongeville S, Chenouard N, Hervé N, Pop S, Provoost T, Meas-Yedid V, Pankajakshan P, Lecomte T, Le Montagner Y, Lagache T, Dufour A, and Olivo-Marin, J.-C. (2012) Icy: an open bioimage informatics platform for extended reproducible research, Nature Methods, 9, 7, pp. 690-6.

 

3. de Chaumont, F., Dos-Santos Coura, R., Serreau, P., Cressant, A., Chabout, J., Granon, S. and Olivo-Marin, J.-C. (2012) Computerized video analysis of social interactions between mice, Nature Methods, 9, 4, pp. 410-7.

 

4. Dufour, A., Thibeaux, R., Labruyere, E. Guillen, N., and Olivo-Marin, J.-C. (2011) 3D Active Meshes: fast discrete deformable models for cell tracking in 3D time-lapse microscopy, IEEE Trans. Image Processing, 20, 7, pp. 1925-37.

 

5. Marim, M., Atlan, M., Angelini, E., and Olivo-Marin, J.-C. (2010) Compressed Sensing with off-axis, frequency-shifting holography, Optics Letters, 35, 6, pp. 871-3.

 

Alain ISRAEL - Cell signalling and Activation

1. Boisson B, Laplantine E, Prando C, Giliani S, Israelsson E, Xu Z, Abhyankar A, Israël L, Trevejo-Nunez G, Bogunovic D, Cepika AM, MacDuff D, Chrabieh M, Hubeau M, Bajolle F, Debré M, Mazzolari E, Vairo D, Agou F, Virgin HW, Bossuyt X, Rambaud C, Facchetti F, Bonnet D, Quartier P, Fournet JC, Pascual V, Chaussabel D, Notarangelo LD, Puel A, Israël A, Casanova JL, Picard C. (2012) Immunodeficiency, autoinflammation and amylopectinosis in humans with inherited HOIL-1 and LUBAC deficiency. Nat Immunol, 12,1178-86

 

2. Kachaner D, Filipe J, Laplantine E, Bauch A, Bennett KL, Superti-Furga G, Israël A, Weil R. (2012). Plk1-dependent phosphorylation of Optineurin provides a negative feedback mechanism for mitotic progression. Mol Cell, 45, 553-66

 

3. Moretti J, Chastagner P, Gastaldello S, Heuss SF, Dirac AM, Bernards R, Masucci MG, Israël A, Brou C. (2010) The translation initiation factor 3f (eIF3f) exhibits a deubiquitinase activity regulating Notch activation. PLoS Biol 8(11):e1000545

 

4. Laplantine E, Fontan E, Chiaravalli J, Lopez T, Lakisic G, Véron M, Agou F, Israël A.  (2009). NEMO specifically recognizes K63-linked poly-ubiquitin chains through a new bipartite ubiquitin-binding domain. EMBO J 28, 2885-95

 

5. Heuss, SF, Ndiaye-Lobry, D., Six, E., Israël, A. & Logeat, F (2008). The intracellular region of Notch ligands Dll1 and Dll3 regulates their trafficking and signaling activity. Proc Natl Acad Sci USA 105, 11212-11217

 

Christophe ZIMMER - Imaging and Modeling

Effect of nuclear architecture on the efficiency of double-strand break repair.

Agmon N, Liefshitz B, Zimmer C*, Fabre E*, Kupiec M*.

Nature Cell Biology. 2013 Jun; 15(6):694-9.

 

A Predictive Computational Model of the Dynamic 3D Interphase Yeast Nucleus.

Wong, H., Marie-Nelly, H., Herbert, S., Carrivain, P., Koszul, R., Fabre, E., Zimmer, C*.

Current Biology, 22, 20, 1881-1890 (2012).

 

Superresolution imaging of HIV in infected cells with FlAsH-PALM.

Lelek M, Di Nunzio F, Henriques R, Charneau P, Arhel N*, and Zimmer C*.

Proc Nat Acad Sci USA, 109 (22): 8564-9 (2012).

 

Chromosome arm length and nuclear constraints determine the dynamic relationship of yeast subtelomeres.

Therizols,P., Duong T., Dujon, B., Zimmer, C*. and Fabre, E*.

Proc Nat Acad Sci USA, 107, 5, 2025-30 (2010).

 

High-resolution statistical mapping reveals gene territories in live yeast.

Berger, A.B., Cabal, G.G., Fabre, E., Duong, T., Buc, H., Nehrbass, U., Olivo-Marin, J.C., Gadal, O*., and Zimmer, C*.

Nature Methods 5, 1031 - 1037 (2008).

 

Alice DAUTRY/Agathe SUBTIL - Biology of Cell Interactions

1. Basquin, C, Malardé, V, Mellor, P,  Anderson, DA, Meas-Yedid, V, Olivo-Marin, JC, Dautry-Varsat, A , Sauvonnet N. (2013). The signalling factor PI 3-kinase is a specific regulator of the clathrin-independent dynamin-dependent endocytosis of IL-2 receptors. J Cell Science. Jan 23.

 

2. Muschiol, S., G. Boncompain, F. Vromman, P. Dehoux, S. Normark, B. Henriques-Normark, and A. Subtil. (2011). Identification of a family of type III secreted effectors conserved in pathogenic Chlamydiae. Infect. Immun. 79 571-580.

 

3. Grassart A, Meas-Yedid V, Dufour A, Olivo-Marin JC, Dautry-Varsat A, Sauvonnet N. (2010). Pak1 phosphorylation enhances cortactin-N-WASP interaction in clathrin-caveolin-independent endocytosis. Traffic. 11(8):1079-91.

 

4. Boncompain, G., B. Schneider, C. Delevoye, O. Kellermann, A. Dautry-Varsat, and A. Subtil. (2010). Production of reactive oxygen species is turned on and rapidly shut down in epithelial cells infected with Chlamydia trachomatis. Infect Immun. 78: 80-7.

 

5. Pennini, M.E., Perrinet S., Dautry-Varsat A., and Subtil A. (2010). Histone methylation by NUE, a novel nuclear effector of the intracellular pathogen Chlamydia trachomatis. PLoS Pathog. . 6, e1000995.

 

Chiara ZURZOLO – Membrane Traffic and Pathogenesis

1. Costanzo M & Zurzolo C (2013)

“The cell biology of prion-like spread of protein aggregates : mechanisms implication in neurodegeneration”

Biochemical Journal, Invited Review, 452(1):1-17          

 

2. Abounit S & Zurzolo C (2012)

“Wiring through tunneling nanotubes: from electrical signals to organelle transfer ”

Journal of Cell Science, Invited Review, 125(Pt 5):1089-98

 

3. Imjeti NS, Lebreton S, Paladino S, de la Fuente E, Gonzales A & Zurzolo C (2011)

“N-Glycosylation instead of cholesterol mediates oligomerization and apical sorting of GPI-APs in FRT cells ”

Molecular Biology of the Cell, 22(23):4621-34

 

4. Marijanovic Z, Caputo A, Campana V & Zurzolo C (2009)

"Identification of the intracellular site of prion conversion"

PLoS Pathogens, 5(5):e1000426

 

5. Gousset K, Schiff E, Langevin C, Marijanovic Z, Caputo A, Browman D, Chenouard N, de Chaumont F, Martino A, Enninga J, Olivo-Marin JC, Männel D & Zurzolo C (2009)

“Prions hijack tunnelling nanotubes for intercellular spread”

Nature Cell Biology, 11(3):328-36

 

Arnaud ECHARD – Membrane Traffic and Cell Division

 

1. A simple model for the fate of the cytokinesis midbody remnant: Implications for remnant degradation by autophagy.

Crowell EF, Tinevez JY, Echard A.

Bioessays: 35,472-81 (2013)

 

2. The NF-kB signaling protein Bcl10 regulates actin dynamics by controlling AP1 and OCRL-bearing vesicles.

Marion S, Mazzolini J, Herit F, Bourdoncle P, Kambou-Pene N, Hailfinger S, Sachse M, Ruland J, Benmerah A, Echard A, Thome M, Niedergang F.

Developmental Cell: 23, 954-967 (2012)

 

3. An ARF6/Rab35 GTPase Cascade for Endocytic Recycling and Successful Cytokinesis. Chesneau L, Dambournet D, Machicoane M, Kouranti I, Fukuda M, Goud B, Echard A. Current Biology: 22, 147-53 (2012)

 

 

4. Rab35 GTPase and OCRL phosphatase remodel lipids and F-actin for successful cytokinesis. Dambournet D, Machicoane M, Chesneau L, Sachse M, Rocancourt M, El Marjou A, Formstecher E, Salomon R, Goud B, Echard A. Nature Cell Biology: 13, 981-88 (2011)

 

5. Rab and actomyosin-dependent fission of transport vesicles at the Golgi complex. Miserey-Lenkei S, Chalancon G, Bardin S, Formstecher E, Goud B, Echard A. Nature Cell Biology: 12, 645-54 (2010)

 

Philippe Sansonetti – Molecular Microbial Pathogenesis

 

1. MARTEYN B, WEST NP, BROWNING DF, COLE JA, SHAW JG, PALM F, MOUNIER J, PREVOST MC, SANSONETTI P, TANG CM.

Modulation of Shigella virulence in response to available oxygen in vivo.

Nature. 2010 May 20;465(7296):355-8.

 

2. KONRADT C, FRIGIMELICA E, NOTHELFER K, PUHAR A, SALGADO-PABON W, DI BARTOLO V, SCOTT-ALGARA D, RODRIGUES CD, SANSONETTI PJ, PHALIPON A.

The Shigella flexneri type three secretion system effector IpgD inhibits T cell migration by manipulating host phosphoinositide metabolism.

Cell Host Microbe. 2011 Apr 21;9(4):263-72.

 

3. PEDRON T, MULET C, DAUGA C, FRANGEUL L, CHERVAUX C, GROMPONE G, SANSONETTI PJ.

A crypt-specific core microbiota resides in the mouse colon.

MBio. 2012 May 22;3(3). pii: e00116-12.

 

4. BERGOUNIOUX J, ELISEE R, PRUNIER AL, DONNADIEU F, SPERANDIO B, SANSONETTI P, ARBIBE L.

Calpain activation by the Shigella flexneri effector VirA regulates key steps in the formation and life of the bacterium's epithelial niche.

Cell Host Microbe. 2012 Mar 15;11(3):240-52.

 

5. SALGADO-PABON W, CELLI S, ARENA ET, NOTHELFER K, ROUX P, SELLGE G, FRIGIMELICA E, BOUSSO P, SANSONETTI PJ, PHALIPON A.

Shigella impairs T lymphocyte dynamics in vivo.

Proc Natl Acad Sci U S A. 2013 Mar 19;110(12):4458-63.

 

 

Nancy Guillén – Cell Biology of Parasitism

 

1. FAUST DM, MARKIEWICZ JM, DANCKAERT A, SOUBIGOU G, GUILLEN N. (2011). Human liver sinusoidal endothelial cells respond to interaction withEntamoeba histolytica by changes in morphology, integrin signalling and cell death. Cell Microbiol. 13(7):1091-106

 

2. MAUGIS B, BRUGUES J, NASSOY P, GUILLEN N, SENS P,  AMBLARD F. (2010). A dynamic instability of the intracellular pressure drives bleb-based motility. J Cell Sci.123 :3884-92.

 

3. THIBEAUX R, DUFOUR A, ROUX P, BERNIER M, BAGLIN AC, FRILEUX P, OLIVO-MARIN JC, GUILLÉN N AND LABRUYÈRE E. (2012) Newly visualized fibrillar collagen scaffolds dictate Entamoeba histolytica invasion route in the human colon. Cell Microbiol.  14(5):609-21

 

4. HON CC, WEBER C, SISMEIRO O, PROUX C, KOUTERO M, DELOGER M, DAS S, AGRAHARI M, DILLIES MA, JAGLA B, COPPEE JY, BHATTACHARYA A, GUILLEN N. 2013. Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytica. Nucleic Acids Res.41(3):1936-52.

 

5. PERDOMO D, BARON B, ROJO-DOMINGUEZ A, RAYNAL B, ENGLAND P, GUILLEN N. (2013). The α-helical regions of KERP1 are important in Entamoebahistolytica adherence to human cells. Sci Rep. 3:1171-1180

 

Pascale Cossart - Bacteria-Cell Interactions

 

Toledo-Arana, A., O. Dussurget, G. Nikitas, N. Sesto, H. Guet-Revillet, E. Loh, J. Gripenland, M. Barthelemy, M. Vergassola, M.-A. Nahori, G. Soubigou, B. Régnault, J.-Y. Coppée, M. Lecuit, J. Johansson, and P. Cossart (2009).

The Listeria transcriptional landscape from saprophytism to virulence.

Nature, 459:950-956

 

Ribet, D., M. Hamon, E. Gouin, M.-A. Nahori, F. Impens, H. Neyret-Kahn, K. Gevaert, J. Vandekerckhove, A. Dejean and P. Cossart (2010).

Listeria monocytogenes impairs SUMOylation for efficient infection.

Nature, 464:1192-1195

 

Stavru, F., F. Bouillaud, A. Sartori, D. Ricquier, and P. Cossart (2011).

Listeria monocytogenes transiently alters mitochondrial dynamics during infection.

Proc Natl Acad Sci USA, 108:3612-7.

 

Lebreton, A., G.Lakisic, V. Job, L. Fritsch, T.-N.Tham, A. Camejo, P.-J. Matteï, B. Regnault, M.-A. Nahori, D. Cabanes, A. Gautreau, S. Ait-Si-Al, A. Dessen, P. Cossart* and H. Bierne* (2011).

A Bacterial Protein Targets the BAHD1 Chromatin Complex to Stimulate Type III Interferon Response.

Science, 331:1319-21.

 

Eskandarian, H.A., M.-A. Nahori, G. Soubigou, P.Y. Coppée, P. Cossart* and M. Hamon* (2013).

A role for SIRT2-dependent histone H3K18 deacetylation in bacterial infection.

Science, In Press

 

UNITS ASSOCIATED WITH THE DEPARTMENT

 

Marc LECUIT - Biology of Infection

 

1. Archambaud C Nahori MA, Soubigou G Bécavin C, Laval L, Lechat P, T Smokvina, Langella P, Lecuit M*, Cossart P*. Impact of Orally Acquired lactobacilli on listeriosis.

Proc Natl Acad Sci U S A. 2012 Oct 9;109 (41) :16684-9

 

2. Nikitas G, Deschamps C, Disson O, Niault T, Cossart P, Lecuit M. Transcytosis of Listeria monocytogenes across the intestinal barrier upon specific targeting of goblet cell accessible E-cadherin

J Exp Med 2011;208(11):2263-77.

 

3. Tazi A, Disson O, Bellais S, Bouaboud A, Dmytruk N, Dramsi S, Mistou M-Y, Khun H, Mechler C, Tardieux I, Trieu-Cuot P, Lecuit M*, Poyart C*.

The surface protein HvgA mediates Group B streptococcus hypervirulence and     meningeal tropism in neonates

J Exp Med. 2010 Oct 25;207(11):2313-22.

 

4. Schilte C, Couderc T, Chrétien F, Sourisseau M, Gangneux N, Guivel-Benhassine F, Gruber A, Tschopp J, Higgs S, Michault A, Arenzana-Seisdedos F, Colonna M, Schwartz O, Lecuit M*, Albert M*.

Type I IFN controls chikungunya virus via its action on non-hematopoetic cells.

 J Exp Med. 2010 Feb 15;207(2):429-42.

 

5. Toledo-Arana A, Dussurget O, Nikitas G, Sesto N, Guet-Revillet H, Balestrino D, Loh E, Gripenland J, Tiensuu T, Vaitkevicius K, Barthelemy M, Vergassola M, Nahori M-A, Soubigou G, Régnault B, Coppée J-Y, Lecuit M, Johansson J, Cossart P

The Listeria transcriptional landscape from saprophytism to virulence

Nature. 2009 Jun 18;459(7249):950-6

 

Carla SALEH - Viruses and RNA Interference

 

1. Goic B, Vodovar N, Mondotte JA, Monot C, Frangeul L, Blanc H, Gausson V, Vera-Otarola J, Cristofari G, Saleh MC. (2013) RNA-mediated interference and reverse transcription control the persistence of RNA viruses in the insect model Drosophila. Nat Immunoldoi:10.1038/ni.2542 ( http://www.ncbi.nlm.nih.gov/pubmed/23435119)

 

2. Goic B, & Saleh MC. (2012) Living with the enemy: viral persistent infections from a friendly viewpoint. Curr Opin Microbiol 15(4):531-7 (http://www.ncbi.nlm.nih.gov/pubmed/22770658)

 

3. Vodovar N, Bronkhorst AW, van Cleef KWR, Miesen P, Blanc H, van Rij RP, & Saleh MC. (2012) Arbovirus-Derived piRNAs Exhibit a Ping-Pong Signature in Mosquito Cells. PLoS ONE 7(1): e30861 (http://www.ncbi.nlm.nih.gov/pubmed/22292064)

 

4. Vodovar N, Goic B, Blanc H, & Saleh MC. (2011) In silico reconstruction of viral genomes from small RNAs improves viral-derived siRNA profiling. J Virol. 85(21):11016-21. Epub 2011 Aug 31 (http://www.ncbi.nlm.nih.gov/pubmed/21880776)

 

5. Bronkhorst AW, van Cleef KW, Vodovar N, Ince IA, Blanc H, Vlak JM, Saleh MC, & van Rij RP. (2012) The DNA virus Invertebrate Iridescent Virus 6 is a target of the Drosophila RNAi machinery. Proc Natl Acad Sci USA 109(51):E3604-13 (http://www.ncbi.nlm.nih.gov/pubmed/23151511)

 

Updated on 12/02/2014

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